CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 44 10 81.48 54 2 44 15 74.58 59 3 37 10 78.72 47 4 46 14 76.67 60 5 39 8 82.98 47 6 49 8 85.96 57 7 40 15 72.73 55 8 36 20 64.29 56 9 45 9 83.33 54 10 55 16 77.46 71 11 39 6 86.67 45 12 49 18 73.13 67 13 41 10 80.39 51 14 45 14 76.27 59 15 50 10 83.33 60 16 45 13 77.59 58 17 36 15 70.59 51 18 48 7 87.27 55 19 51 13 79.69 64 20 48 6 88.89 54 21 52 9 85.25 61 22 43 9 82.69 52 23 45 18 71.43 63 24 44 8 84.62 52 25 41 15 73.21 56 26 54 13 80.60 67 27 32 12 72.73 44 28 36 13 73.47 49 29 46 12 79.31 58 30 46 12 79.31 58 31 41 15 73.21 56 32 46 13 77.97 59 33 42 12 77.78 54 34 44 12 78.57 56 35 46 14 76.67 60 36 38 16 70.37 54 37 38 8 82.61 46 38 35 16 68.63 51 39 38 10 79.17 48 40 35 9 79.55 44 41 33 6 84.62 39 42 39 8 82.98 47 43 39 13 75.00 52 44 35 9 79.55 44 45 43 13 76.79 56 46 32 14 69.57 46 47 31 9 77.50 40 48 33 7 82.50 40 49 30 11 73.17 41 50 37 11 77.08 48 51 29 6 82.86 35 52 26 8 76.47 34 53 29 10 74.36 39 54 30 8 78.95 38 55 35 6 85.37 41 56 32 12 72.73 44 57 28 9 75.68 37 58 27 5 84.38 32 59 32 9 78.05 41 60 29 5 85.29 34 61 35 12 74.47 47 62 25 7 78.12 32 63 21 4 84.00 25 64 28 6 82.35 34 65 19 5 79.17 24 66 30 5 85.71 35 67 20 6 76.92 26 68 18 7 72.00 25 69 14 5 73.68 19 70 22 3 88.00 25 71 20 6 76.92 26 72 20 2 90.91 22 73 18 9 66.67 27 74 20 4 83.33 24 75 24 5 82.76 29 76 17 7 70.83 24 77 13 4 76.47 17 78 18 4 81.82 22 79 13 7 65.00 20 80 5 2 71.43 7 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 3 86 3.37 89 2 6 97 5.83 103 3 2 101 1.94 103 4 2 86 2.27 88 5 1 86 1.15 87 6 1 88 1.12 89 7 3 88 3.30 91 8 1 112 0.88 113 9 2 91 2.15 93 10 2 79 2.47 81 11 2 114 1.72 116 12 0 80 0.00 80 13 0 102 0.00 102 14 0 99 0.00 99 15 1 100 0.99 101 16 1 95 1.04 96 17 2 96 2.04 98 18 0 86 0.00 86 19 0 106 0.00 106 20 0 95 0.00 95 21 0 90 0.00 90 22 0 80 0.00 80 23 1 88 1.12 89 24 0 105 0.00 105 25 0 97 0.00 97 26 4 80 4.76 84 27 2 107 1.83 109 28 1 86 1.15 87 29 5 82 5.75 87 30 2 96 2.04 98 31 1 73 1.35 74 32 1 94 1.05 95 33 0 92 0.00 92 34 3 76 3.80 79 35 2 83 2.35 85 36 1 91 1.09 92 37 0 57 0.00 57 38 2 76 2.56 78 39 2 87 2.25 89 40 0 80 0.00 80 41 2 83 2.35 85 42 0 75 0.00 75 43 2 69 2.82 71 44 0 67 0.00 67 45 2 72 2.70 74 46 2 87 2.25 89 47 0 72 0.00 72 48 0 82 0.00 82 49 1 62 1.59 63 50 0 62 0.00 62 51 1 58 1.69 59 52 3 67 4.29 70 53 1 56 1.75 57 54 2 69 2.82 71 55 3 66 4.35 69 56 2 58 3.33 60 57 0 65 0.00 65 58 1 58 1.69 59 59 0 55 0.00 55 60 2 55 3.51 57 61 2 58 3.33 60 62 1 48 2.04 49 63 0 46 0.00 46 64 1 37 2.63 38 65 0 50 0.00 50 66 1 46 2.13 47 67 0 38 0.00 38 68 1 40 2.44 41 69 0 50 0.00 50 70 0 50 0.00 50 71 3 40 6.98 43 72 0 44 0.00 44 73 1 42 2.33 43 74 1 46 2.13 47 75 0 38 0.00 38 76 1 44 2.22 45 77 0 46 0.00 46 78 1 31 3.12 32 79 1 22 4.35 23 80 1 15 6.25 16 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 4 253 1.56 257 2 8 251 3.09 259 3 6 234 2.50 240 4 7 240 2.83 247 5 2 253 0.78 255 6 3 206 1.44 209 7 7 239 2.85 246 8 2 200 0.99 202 9 5 244 2.01 249 10 3 259 1.15 262 11 4 237 1.66 241 12 5 226 2.16 231 13 6 212 2.75 218 14 6 215 2.71 221 15 9 231 3.75 240 16 2 241 0.82 243 17 6 221 2.64 227 18 5 223 2.19 228 19 3 220 1.35 223 20 5 228 2.15 233 21 5 249 1.97 254 22 3 223 1.33 226 23 5 245 2.00 250 24 7 237 2.87 244 25 7 229 2.97 236 26 4 219 1.79 223 27 7 244 2.79 251 28 5 245 2.00 250 29 3 227 1.30 230 30 9 226 3.83 235 31 7 217 3.12 224 32 3 217 1.36 220 33 6 193 3.02 199 34 5 218 2.24 223 35 2 190 1.04 192 36 7 221 3.07 228 37 6 201 2.90 207 38 5 202 2.42 207 39 3 251 1.18 254 40 2 208 0.95 210 41 4 201 1.95 205 42 5 181 2.69 186 43 5 200 2.44 205 44 3 219 1.35 222 45 2 188 1.05 190 46 3 190 1.55 193 47 3 209 1.42 212 48 4 186 2.11 190 49 3 187 1.58 190 50 2 183 1.08 185 51 3 172 1.71 175 52 1 171 0.58 172 53 2 168 1.18 170 54 5 157 3.09 162 55 2 152 1.30 154 56 3 160 1.84 163 57 5 141 3.42 146 58 4 142 2.74 146 59 2 155 1.27 157 60 0 142 0.00 142 61 2 159 1.24 161 62 2 154 1.28 156 63 1 146 0.68 147 64 3 133 2.21 136 65 2 122 1.61 124 66 3 126 2.33 129 67 0 119 0.00 119 68 1 135 0.74 136 69 2 128 1.54 130 70 0 122 0.00 122 71 4 111 3.48 115 72 3 111 2.63 114 73 0 121 0.00 121 74 2 111 1.77 113 75 1 118 0.84 119 76 0 88 0.00 88 77 2 106 1.85 108 78 0 82 0.00 82 79 1 76 1.30 77 80 0 38 0.00 38 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 22 9 70.97 31 2 8 13 38.10 21 3 14 5 73.68 19 4 11 4 73.33 15 5 20 4 83.33 24 6 14 9 60.87 23 7 5 5 50.00 10 8 15 6 71.43 21 9 8 3 72.73 11 10 11 3 78.57 14 11 18 3 85.71 21 12 15 1 93.75 16 13 10 2 83.33 12 14 11 2 84.62 13 15 14 4 77.78 18 16 8 4 66.67 12 17 9 5 64.29 14 18 10 4 71.43 14 19 13 1 92.86 14 20 11 3 78.57 14 21 11 3 78.57 14 22 10 1 90.91 11 23 4 3 57.14 7 24 7 1 87.50 8 25 5 1 83.33 6 26 6 1 85.71 7 27 10 3 76.92 13 28 8 3 72.73 11 29 6 2 75.00 8 30 6 1 85.71 7 31 4 2 66.67 6 32 5 4 55.56 9 33 7 1 87.50 8 34 6 1 85.71 7 35 4 3 57.14 7 36 6 0 100.00 6 37 3 2 60.00 5 38 1 1 50.00 2 39 7 2 77.78 9 40 2 1 66.67 3 41 1 5 16.67 6 42 8 0 100.00 8 43 4 1 80.00 5 44 4 0 100.00 4 45 2 2 50.00 4 46 2 0 100.00 2 47 4 1 80.00 5 48 0 2 0.00 2 49 4 2 66.67 6 50 3 0 100.00 3 51 4 1 80.00 5 52 3 0 100.00 3 53 1 1 50.00 2 54 1 0 100.00 1 55 3 0 100.00 3 56 2 1 66.67 3 57 8 0 100.00 8 58 1 0 100.00 1 59 0 1 0.00 1 60 0 0 0 61 2 0 100.00 2 62 2 0 100.00 2 63 1 0 100.00 1 64 1 0 100.00 1 65 2 0 100.00 2 66 1 0 100.00 1 67 1 0 100.00 1 68 0 0 0 69 2 1 66.67 3 70 1 0 100.00 1 71 2 1 66.67 3 72 1 0 100.00 1 73 0 0 0 74 0 0 0 75 1 0 100.00 1 76 1 0 100.00 1 77 0 1 0.00 1 78 2 1 66.67 3 79 1 0 100.00 1 80 0 0 0 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 0 45 0.00 45 2 0 41 0.00 41 3 2 33 5.71 35 4 0 23 0.00 23 5 2 26 7.14 28 6 1 27 3.57 28 7 0 30 0.00 30 8 0 29 0.00 29 9 0 24 0.00 24 10 0 27 0.00 27 11 0 25 0.00 25 12 0 23 0.00 23 13 0 26 0.00 26 14 0 15 0.00 15 15 2 19 9.52 21 16 0 27 0.00 27 17 0 20 0.00 20 18 1 27 3.57 28 19 0 14 0.00 14 20 0 26 0.00 26 21 0 12 0.00 12 22 0 17 0.00 17 23 0 13 0.00 13 24 0 16 0.00 16 25 1 20 4.76 21 26 1 18 5.26 19 27 0 8 0.00 8 28 0 16 0.00 16 29 0 13 0.00 13 30 0 9 0.00 9 31 0 13 0.00 13 32 0 7 0.00 7 33 1 14 6.67 15 34 0 19 0.00 19 35 0 9 0.00 9 36 0 15 0.00 15 37 0 7 0.00 7 38 0 6 0.00 6 39 0 5 0.00 5 40 0 10 0.00 10 41 0 11 0.00 11 42 0 3 0.00 3 43 0 10 0.00 10 44 0 12 0.00 12 45 0 6 0.00 6 46 1 4 20.00 5 47 0 7 0.00 7 48 0 8 0.00 8 49 0 4 0.00 4 50 0 6 0.00 6 51 0 6 0.00 6 52 0 8 0.00 8 53 0 5 0.00 5 54 0 12 0.00 12 55 0 6 0.00 6 56 0 7 0.00 7 57 0 1 0.00 1 58 0 8 0.00 8 59 0 2 0.00 2 60 0 3 0.00 3 61 0 1 0.00 1 62 0 4 0.00 4 63 0 5 0.00 5 64 0 4 0.00 4 65 0 6 0.00 6 66 0 2 0.00 2 67 0 4 0.00 4 68 0 2 0.00 2 69 0 3 0.00 3 70 0 0 0 71 0 2 0.00 2 72 0 4 0.00 4 73 1 2 33.33 3 74 0 5 0.00 5 75 0 3 0.00 3 76 0 1 0.00 1 77 0 5 0.00 5 78 0 2 0.00 2 79 0 3 0.00 3 80 0 3 0.00 3 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 9 152 5.59 161 2 3 101 2.88 104 3 3 100 2.91 103 4 1 93 1.06 94 5 1 75 1.32 76 6 2 58 3.33 60 7 2 76 2.56 78 8 1 63 1.56 64 9 0 61 0.00 61 10 2 68 2.86 70 11 1 52 1.89 53 12 2 50 3.85 52 13 0 53 0.00 53 14 0 47 0.00 47 15 1 59 1.67 60 16 1 51 1.92 52 17 1 60 1.64 61 18 2 60 3.23 62 19 3 44 6.38 47 20 1 49 2.00 50 21 2 50 3.85 52 22 0 47 0.00 47 23 0 46 0.00 46 24 1 34 2.86 35 25 0 47 0.00 47 26 2 44 4.35 46 27 0 33 0.00 33 28 2 34 5.56 36 29 1 44 2.22 45 30 0 35 0.00 35 31 0 31 0.00 31 32 0 36 0.00 36 33 0 33 0.00 33 34 2 29 6.45 31 35 0 28 0.00 28 36 0 26 0.00 26 37 0 26 0.00 26 38 2 27 6.90 29 39 0 29 0.00 29 40 0 28 0.00 28 41 0 32 0.00 32 42 0 24 0.00 24 43 0 24 0.00 24 44 0 28 0.00 28 45 0 25 0.00 25 46 0 23 0.00 23 47 0 16 0.00 16 48 0 23 0.00 23 49 0 18 0.00 18 50 1 11 8.33 12 51 1 16 5.88 17 52 0 16 0.00 16 53 0 12 0.00 12 54 1 18 5.26 19 55 0 21 0.00 21 56 0 14 0.00 14 57 0 18 0.00 18 58 0 12 0.00 12 59 0 10 0.00 10 60 0 14 0.00 14 61 0 11 0.00 11 62 1 14 6.67 15 63 1 13 7.14 14 64 0 10 0.00 10 65 1 11 8.33 12 66 0 5 0.00 5 67 0 9 0.00 9 68 0 9 0.00 9 69 0 13 0.00 13 70 0 11 0.00 11 71 0 13 0.00 13 72 0 12 0.00 12 73 0 14 0.00 14 74 0 6 0.00 6 75 0 8 0.00 8 76 0 5 0.00 5 77 0 7 0.00 7 78 0 9 0.00 9 79 0 8 0.00 8 80 0 4 0.00 4