Bismark Processing Report

/Volumes/web/Athaliana/20180411_trimgalore_10bp_Cvirginica_MBD/zr2096_2_s1_R1_val_1.fq.gz and /Volumes/web/Athaliana/20180411_trimgalore_10bp_Cvirginica_MBD/zr2096_2_s1_R2_val_2.fq.gz

Data processed at 09:31 on 2018-05-24


Sequence pairs analysed in total 10000
Paired-end alignments with a unique best hit 1915
Pairs without alignments under any condition 6886
Pairs that did not map uniquely 1199
Genomic sequence context not extractable (edges of chromosomes) 0

Cytosine Methylation

Total C's analysed 49228
Methylated C's in CpG context 5554
Methylated C's in CHG context 186
Methylated C's in CHH context 584
Methylated C's in Unknown context 6
Unmethylated C's in CpG context 1564
Unmethylated C's in CHG context 11561
Unmethylated C's in CHH context 29779
Unmethylated C's in Unknown context 34
Percentage methylation (CpG context) 78.0%
Percentage methylation (CHG context) 1.6%
Percentage methylation (CHH context) 1.9%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 508 original top strand
CTOT 456 complementary to original top strand
CTOB 491 complementary to original bottom strand
OB 460 original bottom strand