CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 19 2 90.48 21 2 16 6 72.73 22 3 18 4 81.82 22 4 20 5 80.00 25 5 10 7 58.82 17 6 15 4 78.95 19 7 12 4 75.00 16 8 19 5 79.17 24 9 17 3 85.00 20 10 19 7 73.08 26 11 29 5 85.29 34 12 12 3 80.00 15 13 21 7 75.00 28 14 14 5 73.68 19 15 26 5 83.87 31 16 19 4 82.61 23 17 16 4 80.00 20 18 29 9 76.32 38 19 15 8 65.22 23 20 15 6 71.43 21 21 17 4 80.95 21 22 14 5 73.68 19 23 19 4 82.61 23 24 15 1 93.75 16 25 15 6 71.43 21 26 23 7 76.67 30 27 27 4 87.10 31 28 19 6 76.00 25 29 12 8 60.00 20 30 13 2 86.67 15 31 21 2 91.30 23 32 15 4 78.95 19 33 13 6 68.42 19 34 23 4 85.19 27 35 15 3 83.33 18 36 21 7 75.00 28 37 13 10 56.52 23 38 16 8 66.67 24 39 11 6 64.71 17 40 21 3 87.50 24 41 18 0 100.00 18 42 12 6 66.67 18 43 23 6 79.31 29 44 12 2 85.71 14 45 17 1 94.44 18 46 21 3 87.50 24 47 20 3 86.96 23 48 19 4 82.61 23 49 20 2 90.91 22 50 10 5 66.67 15 51 16 1 94.12 17 52 10 3 76.92 13 53 18 1 94.74 19 54 14 4 77.78 18 55 15 3 83.33 18 56 14 4 77.78 18 57 12 2 85.71 14 58 14 3 82.35 17 59 16 3 84.21 19 60 17 5 77.27 22 61 18 1 94.74 19 62 15 2 88.24 17 63 8 4 66.67 12 64 13 4 76.47 17 65 14 0 100.00 14 66 8 5 61.54 13 67 10 3 76.92 13 68 8 7 53.33 15 69 11 1 91.67 12 70 8 2 80.00 10 71 11 4 73.33 15 72 13 5 72.22 18 73 11 3 78.57 14 74 10 6 62.50 16 75 9 0 100.00 9 76 8 2 80.00 10 77 9 3 75.00 12 78 9 4 69.23 13 79 8 2 80.00 10 80 5 2 71.43 7 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 2 32 5.88 34 2 0 35 0.00 35 3 1 36 2.70 37 4 0 36 0.00 36 5 1 39 2.50 40 6 2 37 5.13 39 7 0 39 0.00 39 8 0 37 0.00 37 9 0 33 0.00 33 10 1 36 2.70 37 11 0 41 0.00 41 12 1 36 2.70 37 13 0 30 0.00 30 14 1 43 2.27 44 15 0 27 0.00 27 16 0 31 0.00 31 17 0 37 0.00 37 18 0 38 0.00 38 19 0 29 0.00 29 20 0 41 0.00 41 21 0 40 0.00 40 22 0 26 0.00 26 23 0 35 0.00 35 24 0 38 0.00 38 25 1 47 2.08 48 26 0 37 0.00 37 27 1 36 2.70 37 28 0 31 0.00 31 29 0 49 0.00 49 30 0 34 0.00 34 31 0 26 0.00 26 32 0 37 0.00 37 33 1 44 2.22 45 34 0 37 0.00 37 35 1 33 2.94 34 36 0 45 0.00 45 37 1 40 2.44 41 38 0 25 0.00 25 39 0 36 0.00 36 40 0 29 0.00 29 41 0 36 0.00 36 42 1 40 2.44 41 43 0 39 0.00 39 44 1 25 3.85 26 45 0 30 0.00 30 46 2 43 4.44 45 47 0 35 0.00 35 48 0 32 0.00 32 49 0 31 0.00 31 50 2 41 4.65 43 51 0 38 0.00 38 52 0 33 0.00 33 53 1 27 3.57 28 54 0 22 0.00 22 55 0 29 0.00 29 56 0 34 0.00 34 57 1 20 4.76 21 58 0 31 0.00 31 59 0 27 0.00 27 60 0 32 0.00 32 61 0 29 0.00 29 62 1 31 3.12 32 63 0 23 0.00 23 64 2 16 11.11 18 65 0 27 0.00 27 66 0 32 0.00 32 67 0 34 0.00 34 68 0 28 0.00 28 69 0 21 0.00 21 70 0 20 0.00 20 71 0 25 0.00 25 72 0 24 0.00 24 73 0 15 0.00 15 74 0 21 0.00 21 75 0 25 0.00 25 76 0 19 0.00 19 77 0 20 0.00 20 78 0 18 0.00 18 79 1 16 5.88 17 80 0 6 0.00 6 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 3 124 2.36 127 2 2 118 1.67 120 3 1 113 0.88 114 4 3 94 3.09 97 5 1 87 1.14 88 6 0 103 0.00 103 7 1 97 1.02 98 8 3 100 2.91 103 9 1 105 0.94 106 10 1 91 1.09 92 11 2 105 1.87 107 12 4 96 4.00 100 13 2 84 2.33 86 14 4 96 4.00 100 15 2 92 2.13 94 16 2 97 2.02 99 17 1 86 1.15 87 18 0 92 0.00 92 19 1 97 1.02 98 20 1 96 1.03 97 21 0 94 0.00 94 22 3 94 3.09 97 23 2 103 1.90 105 24 2 105 1.87 107 25 2 103 1.90 105 26 1 98 1.01 99 27 0 92 0.00 92 28 0 114 0.00 114 29 0 106 0.00 106 30 2 101 1.94 103 31 3 122 2.40 125 32 0 105 0.00 105 33 3 109 2.68 112 34 2 85 2.30 87 35 3 105 2.78 108 36 2 97 2.02 99 37 1 100 0.99 101 38 1 109 0.91 110 39 0 98 0.00 98 40 0 96 0.00 96 41 1 96 1.03 97 42 1 95 1.04 96 43 2 78 2.50 80 44 0 91 0.00 91 45 2 98 2.00 100 46 0 82 0.00 82 47 1 94 1.05 95 48 2 102 1.92 104 49 1 102 0.97 103 50 2 86 2.27 88 51 0 81 0.00 81 52 1 90 1.10 91 53 2 81 2.41 83 54 1 84 1.18 85 55 1 78 1.27 79 56 1 81 1.22 82 57 1 83 1.19 84 58 3 79 3.66 82 59 0 73 0.00 73 60 1 81 1.22 82 61 0 73 0.00 73 62 0 72 0.00 72 63 0 67 0.00 67 64 2 75 2.60 77 65 1 49 2.00 50 66 1 67 1.47 68 67 0 57 0.00 57 68 0 62 0.00 62 69 0 59 0.00 59 70 0 73 0.00 73 71 2 72 2.70 74 72 0 56 0.00 56 73 0 54 0.00 54 74 1 46 2.13 47 75 0 61 0.00 61 76 0 67 0.00 67 77 0 57 0.00 57 78 0 54 0.00 54 79 0 48 0.00 48 80 0 25 0.00 25 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 14 2 87.50 16 2 9 2 81.82 11 3 10 7 58.82 17 4 10 4 71.43 14 5 3 2 60.00 5 6 9 2 81.82 11 7 11 1 91.67 12 8 6 1 85.71 7 9 6 2 75.00 8 10 7 4 63.64 11 11 1 3 25.00 4 12 9 2 81.82 11 13 6 1 85.71 7 14 5 2 71.43 7 15 5 0 100.00 5 16 4 3 57.14 7 17 3 4 42.86 7 18 9 1 90.00 10 19 4 0 100.00 4 20 10 5 66.67 15 21 4 3 57.14 7 22 3 0 100.00 3 23 5 1 83.33 6 24 10 3 76.92 13 25 4 0 100.00 4 26 3 1 75.00 4 27 8 1 88.89 9 28 9 1 90.00 10 29 3 0 100.00 3 30 0 2 0.00 2 31 7 2 77.78 9 32 4 0 100.00 4 33 4 2 66.67 6 34 6 1 85.71 7 35 6 1 85.71 7 36 7 0 100.00 7 37 6 0 100.00 6 38 6 1 85.71 7 39 4 1 80.00 5 40 4 1 80.00 5 41 0 0 0 42 4 1 80.00 5 43 3 0 100.00 3 44 3 1 75.00 4 45 1 2 33.33 3 46 1 0 100.00 1 47 4 4 50.00 8 48 1 0 100.00 1 49 3 0 100.00 3 50 1 0 100.00 1 51 4 0 100.00 4 52 2 2 50.00 4 53 5 0 100.00 5 54 2 2 50.00 4 55 3 0 100.00 3 56 2 1 66.67 3 57 4 0 100.00 4 58 0 2 0.00 2 59 3 0 100.00 3 60 2 0 100.00 2 61 2 0 100.00 2 62 0 0 0 63 1 0 100.00 1 64 2 0 100.00 2 65 2 0 100.00 2 66 2 0 100.00 2 67 1 0 100.00 1 68 2 0 100.00 2 69 1 0 100.00 1 70 2 0 100.00 2 71 1 1 50.00 2 72 1 0 100.00 1 73 1 0 100.00 1 74 2 0 100.00 2 75 1 0 100.00 1 76 0 0 0 77 3 1 75.00 4 78 0 0 0 79 0 1 0.00 1 80 2 0 100.00 2 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 2 36 5.26 38 2 1 17 5.56 18 3 0 15 0.00 15 4 0 26 0.00 26 5 0 12 0.00 12 6 1 14 6.67 15 7 0 30 0.00 30 8 0 25 0.00 25 9 0 16 0.00 16 10 2 14 12.50 16 11 0 18 0.00 18 12 0 17 0.00 17 13 0 18 0.00 18 14 0 18 0.00 18 15 0 13 0.00 13 16 0 16 0.00 16 17 0 17 0.00 17 18 1 8 11.11 9 19 1 16 5.88 17 20 0 10 0.00 10 21 0 11 0.00 11 22 0 13 0.00 13 23 0 12 0.00 12 24 0 13 0.00 13 25 0 8 0.00 8 26 0 9 0.00 9 27 0 10 0.00 10 28 0 8 0.00 8 29 0 8 0.00 8 30 0 15 0.00 15 31 0 15 0.00 15 32 1 9 10.00 10 33 0 9 0.00 9 34 0 11 0.00 11 35 0 11 0.00 11 36 0 11 0.00 11 37 0 8 0.00 8 38 1 4 20.00 5 39 0 12 0.00 12 40 0 6 0.00 6 41 0 10 0.00 10 42 0 5 0.00 5 43 0 9 0.00 9 44 0 12 0.00 12 45 0 7 0.00 7 46 0 10 0.00 10 47 1 6 14.29 7 48 0 5 0.00 5 49 0 1 0.00 1 50 0 7 0.00 7 51 0 7 0.00 7 52 0 6 0.00 6 53 0 3 0.00 3 54 0 5 0.00 5 55 0 7 0.00 7 56 0 2 0.00 2 57 0 4 0.00 4 58 0 3 0.00 3 59 0 7 0.00 7 60 0 2 0.00 2 61 0 7 0.00 7 62 0 1 0.00 1 63 0 10 0.00 10 64 0 5 0.00 5 65 0 0 0 66 0 2 0.00 2 67 0 5 0.00 5 68 0 2 0.00 2 69 0 3 0.00 3 70 0 4 0.00 4 71 0 4 0.00 4 72 0 0 0 73 0 6 0.00 6 74 0 4 0.00 4 75 0 0 0 76 0 0 0 77 1 1 50.00 2 78 0 3 0.00 3 79 0 3 0.00 3 80 0 0 0 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 2 68 2.86 70 2 2 60 3.23 62 3 1 75 1.32 76 4 1 47 2.08 48 5 2 51 3.77 53 6 2 57 3.39 59 7 0 57 0.00 57 8 0 57 0.00 57 9 1 49 2.00 50 10 1 44 2.22 45 11 1 50 1.96 51 12 1 27 3.57 28 13 0 47 0.00 47 14 1 36 2.70 37 15 1 36 2.70 37 16 0 47 0.00 47 17 1 41 2.38 42 18 1 47 2.08 48 19 0 34 0.00 34 20 2 40 4.76 42 21 2 33 5.71 35 22 0 28 0.00 28 23 0 30 0.00 30 24 1 28 3.45 29 25 1 34 2.86 35 26 0 37 0.00 37 27 0 30 0.00 30 28 1 26 3.70 27 29 1 38 2.56 39 30 0 28 0.00 28 31 2 27 6.90 29 32 0 21 0.00 21 33 0 18 0.00 18 34 0 14 0.00 14 35 0 22 0.00 22 36 1 26 3.70 27 37 0 22 0.00 22 38 0 25 0.00 25 39 0 21 0.00 21 40 1 24 4.00 25 41 0 14 0.00 14 42 0 20 0.00 20 43 0 16 0.00 16 44 0 26 0.00 26 45 0 24 0.00 24 46 1 29 3.33 30 47 0 19 0.00 19 48 0 19 0.00 19 49 0 20 0.00 20 50 0 20 0.00 20 51 0 14 0.00 14 52 0 20 0.00 20 53 0 10 0.00 10 54 0 14 0.00 14 55 0 10 0.00 10 56 0 16 0.00 16 57 0 16 0.00 16 58 1 13 7.14 14 59 0 18 0.00 18 60 0 9 0.00 9 61 0 9 0.00 9 62 0 13 0.00 13 63 0 14 0.00 14 64 0 8 0.00 8 65 0 10 0.00 10 66 0 12 0.00 12 67 0 10 0.00 10 68 0 12 0.00 12 69 0 13 0.00 13 70 1 11 8.33 12 71 0 6 0.00 6 72 0 10 0.00 10 73 0 12 0.00 12 74 0 15 0.00 15 75 0 8 0.00 8 76 0 9 0.00 9 77 0 10 0.00 10 78 0 10 0.00 10 79 0 7 0.00 7 80 0 7 0.00 7