Bismark Processing Report

/Volumes/web/Athaliana/20180411_trimgalore_10bp_Cvirginica_MBD/zr2096_1_s1_R1_val_1.fq.gz and /Volumes/web/Athaliana/20180411_trimgalore_10bp_Cvirginica_MBD/zr2096_1_s1_R2_val_2.fq.gz

Data processed at 09:31 on 2018-05-24


Sequence pairs analysed in total 10000
Paired-end alignments with a unique best hit 816
Pairs without alignments under any condition 8704
Pairs that did not map uniquely 480
Genomic sequence context not extractable (edges of chromosomes) 0

Cytosine Methylation

Total C's analysed 22392
Methylated C's in CpG context 2436
Methylated C's in CHG context 58
Methylated C's in CHH context 197
Methylated C's in Unknown context 8
Unmethylated C's in CpG context 638
Unmethylated C's in CHG context 5096
Unmethylated C's in CHH context 13967
Unmethylated C's in Unknown context 31
Percentage methylation (CpG context) 79.2%
Percentage methylation (CHG context) 1.1%
Percentage methylation (CHH context) 1.4%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 213 original top strand
CTOT 229 complementary to original top strand
CTOB 188 complementary to original bottom strand
OB 186 original bottom strand