CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 44 19 69.84 63 2 40 14 74.07 54 3 48 16 75.00 64 4 49 16 75.38 65 5 53 16 76.81 69 6 36 9 80.00 45 7 37 21 63.79 58 8 40 22 64.52 62 9 43 20 68.25 63 10 55 15 78.57 70 11 51 9 85.00 60 12 55 10 84.62 65 13 51 16 76.12 67 14 50 20 71.43 70 15 47 15 75.81 62 16 44 17 72.13 61 17 47 22 68.12 69 18 45 7 86.54 52 19 65 19 77.38 84 20 48 12 80.00 60 21 45 18 71.43 63 22 44 18 70.97 62 23 58 13 81.69 71 24 61 15 80.26 76 25 47 13 78.33 60 26 61 12 83.56 73 27 49 12 80.33 61 28 53 13 80.30 66 29 45 15 75.00 60 30 47 7 87.04 54 31 55 9 85.94 64 32 52 17 75.36 69 33 45 11 80.36 56 34 48 14 77.42 62 35 38 15 71.70 53 36 45 15 75.00 60 37 34 15 69.39 49 38 47 13 78.33 60 39 49 8 85.96 57 40 36 17 67.92 53 41 30 12 71.43 42 42 44 15 74.58 59 43 46 9 83.64 55 44 42 11 79.25 53 45 30 9 76.92 39 46 50 14 78.12 64 47 42 15 73.68 57 48 50 13 79.37 63 49 42 8 84.00 50 50 47 16 74.60 63 51 38 9 80.85 47 52 47 11 81.03 58 53 35 16 68.63 51 54 35 8 81.40 43 55 34 11 75.56 45 56 40 10 80.00 50 57 38 13 74.51 51 58 39 10 79.59 49 59 39 9 81.25 48 60 40 13 75.47 53 61 36 9 80.00 45 62 39 12 76.47 51 63 45 11 80.36 56 64 29 9 76.32 38 65 31 6 83.78 37 66 34 14 70.83 48 67 35 7 83.33 42 68 28 9 75.68 37 69 19 11 63.33 30 70 26 15 63.41 41 71 31 12 72.09 43 72 28 8 77.78 36 73 36 7 83.72 43 74 23 4 85.19 27 75 29 5 85.29 34 76 24 14 63.16 38 77 25 1 96.15 26 78 26 5 83.87 31 79 19 2 90.48 21 80 7 2 77.78 9 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 4 107 3.60 111 2 2 96 2.04 98 3 2 92 2.13 94 4 4 96 4.00 100 5 1 85 1.16 86 6 2 110 1.79 112 7 0 98 0.00 98 8 3 94 3.09 97 9 1 95 1.04 96 10 2 112 1.75 114 11 2 93 2.11 95 12 3 99 2.94 102 13 1 109 0.91 110 14 3 103 2.83 106 15 1 118 0.84 119 16 2 100 1.96 102 17 4 94 4.08 98 18 2 119 1.65 121 19 2 105 1.87 107 20 1 101 0.98 102 21 2 96 2.04 98 22 2 98 2.00 100 23 2 108 1.82 110 24 1 94 1.05 95 25 2 104 1.89 106 26 1 105 0.94 106 27 2 114 1.72 116 28 0 97 0.00 97 29 2 81 2.41 83 30 1 106 0.93 107 31 4 107 3.60 111 32 0 86 0.00 86 33 1 103 0.96 104 34 2 90 2.17 92 35 1 96 1.03 97 36 2 96 2.04 98 37 0 92 0.00 92 38 2 97 2.02 99 39 1 100 0.99 101 40 2 96 2.04 98 41 1 98 1.01 99 42 1 111 0.89 112 43 3 96 3.03 99 44 0 75 0.00 75 45 2 97 2.02 99 46 1 85 1.16 86 47 3 85 3.41 88 48 1 72 1.37 73 49 1 87 1.14 88 50 0 74 0.00 74 51 1 71 1.39 72 52 2 96 2.04 98 53 2 90 2.17 92 54 1 103 0.96 104 55 1 88 1.12 89 56 0 82 0.00 82 57 1 95 1.04 96 58 1 75 1.32 76 59 1 69 1.43 70 60 1 76 1.30 77 61 1 63 1.56 64 62 1 72 1.37 73 63 0 70 0.00 70 64 0 76 0.00 76 65 1 55 1.79 56 66 0 76 0.00 76 67 1 69 1.43 70 68 0 46 0.00 46 69 2 55 3.51 57 70 0 64 0.00 64 71 1 54 1.82 55 72 1 64 1.54 65 73 0 53 0.00 53 74 0 51 0.00 51 75 0 54 0.00 54 76 1 49 2.00 50 77 1 56 1.75 57 78 0 34 0.00 34 79 1 31 3.12 32 80 0 24 0.00 24 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 13 289 4.30 302 2 7 285 2.40 292 3 9 289 3.02 298 4 7 266 2.56 273 5 3 265 1.12 268 6 5 264 1.86 269 7 6 289 2.03 295 8 6 276 2.13 282 9 5 278 1.77 283 10 7 277 2.46 284 11 3 272 1.09 275 12 6 273 2.15 279 13 5 225 2.17 230 14 4 257 1.53 261 15 4 235 1.67 239 16 2 261 0.76 263 17 5 265 1.85 270 18 12 250 4.58 262 19 6 264 2.22 270 20 6 254 2.31 260 21 7 292 2.34 299 22 5 272 1.81 277 23 2 283 0.70 285 24 6 249 2.35 255 25 4 273 1.44 277 26 6 255 2.30 261 27 8 247 3.14 255 28 3 254 1.17 257 29 5 275 1.79 280 30 4 237 1.66 241 31 8 238 3.25 246 32 1 235 0.42 236 33 5 248 1.98 253 34 8 254 3.05 262 35 6 280 2.10 286 36 3 246 1.20 249 37 4 235 1.67 239 38 4 229 1.72 233 39 2 258 0.77 260 40 5 237 2.07 242 41 3 278 1.07 281 42 0 243 0.00 243 43 5 230 2.13 235 44 6 250 2.34 256 45 3 227 1.30 230 46 1 240 0.41 241 47 4 239 1.65 243 48 1 247 0.40 248 49 0 239 0.00 239 50 2 237 0.84 239 51 0 209 0.00 209 52 1 184 0.54 185 53 2 212 0.93 214 54 5 202 2.42 207 55 3 211 1.40 214 56 3 205 1.44 208 57 3 200 1.48 203 58 3 181 1.63 184 59 2 183 1.08 185 60 4 205 1.91 209 61 5 208 2.35 213 62 1 195 0.51 196 63 3 202 1.46 205 64 1 213 0.47 214 65 1 178 0.56 179 66 3 161 1.83 164 67 3 143 2.05 146 68 3 174 1.69 177 69 6 164 3.53 170 70 2 171 1.16 173 71 6 143 4.03 149 72 1 140 0.71 141 73 5 182 2.67 187 74 5 130 3.70 135 75 2 128 1.54 130 76 2 130 1.52 132 77 2 134 1.47 136 78 2 142 1.39 144 79 0 111 0.00 111 80 0 48 0.00 48 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 27 10 72.97 37 2 27 7 79.41 34 3 15 6 71.43 21 4 25 6 80.65 31 5 17 4 80.95 21 6 18 4 81.82 22 7 23 5 82.14 28 8 19 5 79.17 24 9 27 4 87.10 31 10 26 5 83.87 31 11 16 7 69.57 23 12 18 8 69.23 26 13 11 5 68.75 16 14 15 1 93.75 16 15 18 9 66.67 27 16 17 6 73.91 23 17 17 6 73.91 23 18 14 4 77.78 18 19 17 5 77.27 22 20 21 3 87.50 24 21 19 2 90.48 21 22 15 3 83.33 18 23 10 5 66.67 15 24 8 4 66.67 12 25 15 4 78.95 19 26 17 7 70.83 24 27 12 3 80.00 15 28 15 4 78.95 19 29 11 4 73.33 15 30 9 4 69.23 13 31 15 3 83.33 18 32 12 6 66.67 18 33 10 6 62.50 16 34 9 3 75.00 12 35 8 3 72.73 11 36 16 4 80.00 20 37 5 7 41.67 12 38 9 2 81.82 11 39 6 4 60.00 10 40 10 2 83.33 12 41 14 3 82.35 17 42 4 3 57.14 7 43 11 2 84.62 13 44 6 7 46.15 13 45 12 2 85.71 14 46 11 2 84.62 13 47 8 2 80.00 10 48 9 4 69.23 13 49 6 1 85.71 7 50 8 2 80.00 10 51 12 1 92.31 13 52 4 0 100.00 4 53 10 2 83.33 12 54 7 2 77.78 9 55 5 1 83.33 6 56 7 1 87.50 8 57 3 1 75.00 4 58 8 3 72.73 11 59 7 1 87.50 8 60 4 0 100.00 4 61 6 1 85.71 7 62 10 3 76.92 13 63 7 4 63.64 11 64 8 0 100.00 8 65 3 1 75.00 4 66 4 2 66.67 6 67 7 1 87.50 8 68 6 1 85.71 7 69 7 1 87.50 8 70 2 0 100.00 2 71 6 2 75.00 8 72 8 4 66.67 12 73 4 2 66.67 6 74 2 1 66.67 3 75 2 4 33.33 6 76 2 0 100.00 2 77 1 4 20.00 5 78 5 0 100.00 5 79 1 1 50.00 2 80 2 1 66.67 3 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 1 75 1.32 76 2 2 43 4.44 45 3 1 46 2.13 47 4 0 53 0.00 53 5 0 42 0.00 42 6 2 37 5.13 39 7 0 53 0.00 53 8 1 53 1.85 54 9 2 43 4.44 45 10 0 37 0.00 37 11 1 40 2.44 41 12 0 35 0.00 35 13 1 31 3.12 32 14 0 34 0.00 34 15 0 31 0.00 31 16 2 47 4.08 49 17 1 29 3.33 30 18 0 46 0.00 46 19 0 30 0.00 30 20 0 30 0.00 30 21 0 28 0.00 28 22 0 30 0.00 30 23 1 32 3.03 33 24 1 26 3.70 27 25 1 28 3.45 29 26 0 23 0.00 23 27 0 29 0.00 29 28 0 23 0.00 23 29 1 19 5.00 20 30 0 30 0.00 30 31 0 23 0.00 23 32 1 27 3.57 28 33 1 19 5.00 20 34 1 17 5.56 18 35 1 29 3.33 30 36 1 18 5.26 19 37 2 19 9.52 21 38 0 23 0.00 23 39 0 17 0.00 17 40 0 21 0.00 21 41 0 12 0.00 12 42 0 16 0.00 16 43 0 21 0.00 21 44 0 12 0.00 12 45 0 15 0.00 15 46 0 14 0.00 14 47 0 9 0.00 9 48 0 16 0.00 16 49 1 18 5.26 19 50 0 9 0.00 9 51 0 22 0.00 22 52 0 15 0.00 15 53 1 12 7.69 13 54 1 11 8.33 12 55 0 10 0.00 10 56 0 11 0.00 11 57 0 11 0.00 11 58 0 13 0.00 13 59 0 12 0.00 12 60 0 9 0.00 9 61 0 9 0.00 9 62 0 7 0.00 7 63 0 14 0.00 14 64 0 10 0.00 10 65 0 11 0.00 11 66 0 13 0.00 13 67 0 10 0.00 10 68 0 3 0.00 3 69 0 10 0.00 10 70 0 10 0.00 10 71 1 6 14.29 7 72 0 9 0.00 9 73 0 5 0.00 5 74 1 7 12.50 8 75 0 6 0.00 6 76 0 6 0.00 6 77 0 8 0.00 8 78 0 5 0.00 5 79 0 2 0.00 2 80 1 2 33.33 3 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 8 203 3.79 211 2 2 146 1.35 148 3 3 142 2.07 145 4 0 129 0.00 129 5 0 125 0.00 125 6 2 123 1.60 125 7 1 104 0.95 105 8 2 101 1.94 103 9 4 103 3.74 107 10 2 101 1.94 103 11 2 105 1.87 107 12 2 102 1.92 104 13 1 95 1.04 96 14 0 106 0.00 106 15 2 86 2.27 88 16 1 78 1.27 79 17 0 77 0.00 77 18 1 77 1.28 78 19 4 80 4.76 84 20 3 82 3.53 85 21 3 77 3.75 80 22 0 91 0.00 91 23 2 75 2.60 77 24 1 84 1.18 85 25 0 73 0.00 73 26 1 76 1.30 77 27 1 73 1.35 74 28 0 70 0.00 70 29 1 65 1.52 66 30 3 62 4.62 65 31 0 65 0.00 65 32 0 55 0.00 55 33 1 63 1.56 64 34 1 66 1.49 67 35 0 47 0.00 47 36 2 56 3.45 58 37 2 53 3.64 55 38 1 61 1.61 62 39 1 65 1.52 66 40 0 48 0.00 48 41 0 46 0.00 46 42 2 47 4.08 49 43 0 53 0.00 53 44 1 51 1.92 52 45 0 38 0.00 38 46 0 37 0.00 37 47 1 41 2.38 42 48 0 57 0.00 57 49 0 48 0.00 48 50 0 48 0.00 48 51 1 35 2.78 36 52 0 36 0.00 36 53 0 42 0.00 42 54 0 36 0.00 36 55 0 37 0.00 37 56 0 35 0.00 35 57 0 37 0.00 37 58 0 27 0.00 27 59 0 33 0.00 33 60 0 44 0.00 44 61 0 31 0.00 31 62 0 31 0.00 31 63 2 32 5.88 34 64 0 30 0.00 30 65 0 36 0.00 36 66 1 27 3.57 28 67 1 32 3.03 33 68 0 29 0.00 29 69 0 26 0.00 26 70 0 26 0.00 26 71 0 28 0.00 28 72 0 20 0.00 20 73 0 20 0.00 20 74 0 20 0.00 20 75 0 18 0.00 18 76 0 16 0.00 16 77 0 16 0.00 16 78 0 17 0.00 17 79 0 19 0.00 19 80 0 19 0.00 19