Bismark Processing Report

/Volumes/web/Athaliana/20180411_trimgalore_10bp_Cvirginica_MBD/zr2096_10_s1_R1_val_1.fq.gz and /Volumes/web/Athaliana/20180411_trimgalore_10bp_Cvirginica_MBD/zr2096_10_s1_R2_val_2.fq.gz

Data processed at 09:31 on 2018-05-24


Sequence pairs analysed in total 10000
Paired-end alignments with a unique best hit 2085
Pairs without alignments under any condition 6803
Pairs that did not map uniquely 1112
Genomic sequence context not extractable (edges of chromosomes) 0

Cytosine Methylation

Total C's analysed 58898
Methylated C's in CpG context 6616
Methylated C's in CHG context 217
Methylated C's in CHH context 640
Methylated C's in Unknown context 3
Unmethylated C's in CpG context 1946
Unmethylated C's in CHG context 13741
Unmethylated C's in CHH context 35738
Unmethylated C's in Unknown context 16
Percentage methylation (CpG context) 77.3%
Percentage methylation (CHG context) 1.6%
Percentage methylation (CHH context) 1.8%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 560 original top strand
CTOT 523 complementary to original top strand
CTOB 513 complementary to original bottom strand
OB 489 original bottom strand