zr2096_9_s1_R1_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 5207356 lines in total Total number of methylation call strings processed: 10414712 Final Cytosine Methylation Report ================================= Total number of C's analysed: 90111105 Total methylated C's in CpG context: 10936380 Total methylated C's in CHG context: 353176 Total methylated C's in CHH context: 964989 Total C to T conversions in CpG context: 2186658 Total C to T conversions in CHG context: 20344334 Total C to T conversions in CHH context: 55325568 C methylated in CpG context: 83.3% C methylated in CHG context: 1.7% C methylated in CHH context: 1.7%