CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 132866 29742 81.71 162608 2 140035 28003 83.34 168038 3 127484 26961 82.54 154445 4 126023 26681 82.53 152704 5 130160 26538 83.06 156698 6 128737 25881 83.26 154618 7 133265 29040 82.11 162305 8 131180 27077 82.89 158257 9 130877 26503 83.16 157380 10 137293 27444 83.34 164737 11 139815 27451 83.59 167266 12 137330 26213 83.97 163543 13 138813 27069 83.68 165882 14 136780 26271 83.89 163051 15 137239 26457 83.84 163696 16 139613 26643 83.97 166256 17 137545 26727 83.73 164272 18 137204 26696 83.71 163900 19 138343 26935 83.70 165278 20 139144 26877 83.81 166021 21 138756 26246 84.09 165002 22 138996 26421 84.03 165417 23 139899 26618 84.01 166517 24 138704 26058 84.18 164762 25 139378 26435 84.06 165813 26 138871 26418 84.02 165289 27 136023 25794 84.06 161817 28 138000 26556 83.86 164556 29 136307 26168 83.89 162475 30 134295 25524 84.03 159819 31 135813 26195 83.83 162008 32 135134 25472 84.14 160606 33 134019 25099 84.23 159118 34 134390 25806 83.89 160196 35 132375 25094 84.06 157469 36 129773 24477 84.13 154250 37 130171 24963 83.91 155134 38 128753 24748 83.88 153501 39 127207 24143 84.05 151350 40 127172 24318 83.95 151490 41 123634 23963 83.76 147597 42 121122 22937 84.08 144059 43 120987 23082 83.98 144069 44 120136 22991 83.94 143127 45 118086 22270 84.13 140356 46 117101 22824 83.69 139925 47 116112 22492 83.77 138604 48 113592 21757 83.93 135349 49 112352 22102 83.56 134454 50 110162 21506 83.67 131668 51 107253 20319 84.07 127572 52 106204 20676 83.70 126880 53 104757 20440 83.67 125197 54 103339 20212 83.64 123551 55 103077 20303 83.54 123380 56 101056 20032 83.46 121088 57 99170 19416 83.63 118586 58 97892 19310 83.52 117202 59 96687 18762 83.75 115449 60 93683 18554 83.47 112237 61 92935 18596 83.33 111531 62 90432 17690 83.64 108122 63 87283 17211 83.53 104494 64 86576 17245 83.39 103821 65 84516 17021 83.24 101537 66 81438 16177 83.43 97615 67 81073 16002 83.52 97075 68 79562 15982 83.27 95544 69 77044 15262 83.47 92306 70 75753 15529 82.99 91282 71 74326 14939 83.26 89265 72 71485 14810 82.84 86295 73 69552 14250 83.00 83802 74 67947 13730 83.19 81677 75 65272 13301 83.07 78573 76 63135 12785 83.16 75920 77 60114 12356 82.95 72470 78 54242 11262 82.81 65504 79 43318 8962 82.86 52280 80 19143 4087 82.41 23230 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 10049 243376 3.97 253425 2 5602 240450 2.28 246052 3 5009 249801 1.97 254810 4 4191 246168 1.67 250359 5 4870 249289 1.92 254159 6 4766 251281 1.86 256047 7 4182 254192 1.62 258374 8 4408 256257 1.69 260665 9 4159 256848 1.59 261007 10 4377 253626 1.70 258003 11 4193 249758 1.65 253951 12 4245 255631 1.63 259876 13 4204 250553 1.65 254757 14 4197 248871 1.66 253068 15 4193 258054 1.60 262247 16 4214 255758 1.62 259972 17 4270 253626 1.66 257896 18 4352 260828 1.64 265180 19 4240 256775 1.62 261015 20 4362 253013 1.69 257375 21 4340 257908 1.65 262248 22 4204 251656 1.64 255860 23 4380 252742 1.70 257122 24 4242 259134 1.61 263376 25 4155 254363 1.61 258518 26 4349 251331 1.70 255680 27 4306 256471 1.65 260777 28 4265 252476 1.66 256741 29 4241 252088 1.65 256329 30 4118 250993 1.61 255111 31 4103 248823 1.62 252926 32 4178 245315 1.67 249493 33 4097 249360 1.62 253457 34 3978 242027 1.62 246005 35 4045 239527 1.66 243572 36 4061 240293 1.66 244354 37 3957 234254 1.66 238211 38 3918 231393 1.67 235311 39 3758 234422 1.58 238180 40 3730 227900 1.61 231630 41 3769 224132 1.65 227901 42 3681 226051 1.60 229732 43 3626 221611 1.61 225237 44 3645 216309 1.66 219954 45 3529 218533 1.59 222062 46 3543 212202 1.64 215745 47 3508 208682 1.65 212190 48 3443 209206 1.62 212649 49 3346 203215 1.62 206561 50 3816 198004 1.89 201820 51 3349 201076 1.64 204425 52 3348 194652 1.69 198000 53 3204 190617 1.65 193821 54 3098 191393 1.59 194491 55 2998 187081 1.58 190079 56 3019 183299 1.62 186318 57 2981 184803 1.59 187784 58 2828 178414 1.56 181242 59 2960 175089 1.66 178049 60 2789 175348 1.57 178137 61 2778 168588 1.62 171366 62 2836 165196 1.69 168032 63 2687 165357 1.60 168044 64 2663 158571 1.65 161234 65 2669 154908 1.69 157577 66 2487 153088 1.60 155575 67 2405 149053 1.59 151458 68 2369 145344 1.60 147713 69 2344 143754 1.60 146098 70 2199 139305 1.55 141504 71 2285 135475 1.66 137760 72 2167 134044 1.59 136211 73 2136 129307 1.63 131443 74 2073 125901 1.62 127974 75 1982 124608 1.57 126590 76 1965 118875 1.63 120840 77 1863 110591 1.66 112454 78 1678 102150 1.62 103828 79 1270 80106 1.56 81376 80 576 35284 1.61 35860 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 19174 705348 2.65 724522 2 16949 695645 2.38 712594 3 15104 708874 2.09 723978 4 14362 703599 2.00 717961 5 14517 700414 2.03 714931 6 13861 671348 2.02 685209 7 13017 674922 1.89 687939 8 12528 662878 1.85 675406 9 13048 665616 1.92 678664 10 13386 675130 1.94 688516 11 12831 655348 1.92 668179 12 12906 652765 1.94 665671 13 12998 665606 1.92 678604 14 12838 657650 1.91 670488 15 12772 665666 1.88 678438 16 12723 674043 1.85 686766 17 12894 661379 1.91 674273 18 12748 662430 1.89 675178 19 12871 669170 1.89 682041 20 12849 659742 1.91 672591 21 12914 659498 1.92 672412 22 12872 663353 1.90 676225 23 12641 661345 1.88 673986 24 12525 664103 1.85 676628 25 12382 667535 1.82 679917 26 11872 657232 1.77 669104 27 11739 655209 1.76 666948 28 11539 659978 1.72 671517 29 11696 645730 1.78 657426 30 11296 646407 1.72 657703 31 11453 656826 1.71 668279 32 10962 637315 1.69 648277 33 10752 634283 1.67 645035 34 10734 638596 1.65 649330 35 10534 628032 1.65 638566 36 10368 625032 1.63 635400 37 10286 623849 1.62 634135 38 10020 613080 1.61 623100 39 9913 609094 1.60 619007 40 9720 610791 1.57 620511 41 9693 600192 1.59 609885 42 9414 592285 1.56 601699 43 9378 592897 1.56 602275 44 9321 580507 1.58 589828 45 9267 573997 1.59 583264 46 9051 574596 1.55 583647 47 8908 566161 1.55 575069 48 8991 560749 1.58 569740 49 8736 560761 1.53 569497 50 9784 537982 1.79 547766 51 8507 533956 1.57 542463 52 8731 535492 1.60 544223 53 8079 516041 1.54 524120 54 7925 509935 1.53 517860 55 7985 506855 1.55 514840 56 7761 497755 1.54 505516 57 7548 491491 1.51 499039 58 7482 486534 1.51 494016 59 7515 479384 1.54 486899 60 7262 468275 1.53 475537 61 7196 461911 1.53 469107 62 7017 450974 1.53 457991 63 6877 443885 1.53 450762 64 6774 441714 1.51 448488 65 6693 427560 1.54 434253 66 6319 417109 1.49 423428 67 6563 412791 1.57 419354 68 6379 406763 1.54 413142 69 6168 397940 1.53 404108 70 5915 389347 1.50 395262 71 5738 378751 1.49 384489 72 5678 371435 1.51 377113 73 5621 359567 1.54 365188 74 5381 348996 1.52 354377 75 5240 339297 1.52 344537 76 5144 329480 1.54 334624 77 4765 311188 1.51 315953 78 4441 284505 1.54 288946 79 3573 227198 1.55 230771 80 1564 97870 1.57 99434 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 81232 20513 79.84 101745 2 64338 14447 81.66 78785 3 57041 12938 81.51 69979 4 51421 11846 81.28 63267 5 50881 11526 81.53 62407 6 48820 10891 81.76 59711 7 49527 12315 80.09 61842 8 47394 10486 81.88 57880 9 45641 10203 81.73 55844 10 46311 10011 82.23 56322 11 45780 10008 82.06 55788 12 43881 9365 82.41 53246 13 43834 9064 82.87 52898 14 42078 9067 82.27 51145 15 42156 8619 83.03 50775 16 40810 8419 82.90 49229 17 39300 8306 82.55 47606 18 37634 7768 82.89 45402 19 36645 7640 82.75 44285 20 35660 7586 82.46 43246 21 34760 7430 82.39 42190 22 33836 6937 82.99 40773 23 33114 6877 82.80 39991 24 32255 6637 82.93 38892 25 31886 6688 82.66 38574 26 30352 6426 82.53 36778 27 29233 6239 82.41 35472 28 28842 5832 83.18 34674 29 27670 5905 82.41 33575 30 26538 5412 83.06 31950 31 26385 5665 82.32 32050 32 25628 5319 82.81 30947 33 24817 5157 82.80 29974 34 24351 5117 82.64 29468 35 23549 4893 82.80 28442 36 22259 4740 82.44 26999 37 21978 4561 82.81 26539 38 21375 4472 82.70 25847 39 20813 4461 82.35 25274 40 20646 4343 82.62 24989 41 19326 4165 82.27 23491 42 18526 3881 82.68 22407 43 17942 3790 82.56 21732 44 17807 3761 82.56 21568 45 17179 3609 82.64 20788 46 16674 3594 82.27 20268 47 16289 3593 81.93 19882 48 15582 3317 82.45 18899 49 15025 3271 82.12 18296 50 14679 3087 82.62 17766 51 14100 2977 82.57 17077 52 13505 2833 82.66 16338 53 13123 2914 81.83 16037 54 12755 2906 81.44 15661 55 12792 2746 82.33 15538 56 11940 2692 81.60 14632 57 12224 2585 82.54 14809 58 11370 2516 81.88 13886 59 10875 2406 81.88 13281 60 10544 2305 82.06 12849 61 10233 2262 81.90 12495 62 9911 2350 80.83 12261 63 9655 2172 81.64 11827 64 9282 2083 81.67 11365 65 8928 2020 81.55 10948 66 8587 1998 81.12 10585 67 8540 1900 81.80 10440 68 8096 1909 80.92 10005 69 7866 1839 81.05 9705 70 7740 1834 80.84 9574 71 7411 1768 80.74 9179 72 7137 1747 80.34 8884 73 7047 1623 81.28 8670 74 6617 1567 80.85 8184 75 6277 1591 79.78 7868 76 6071 1393 81.34 7464 77 5680 1390 80.34 7070 78 5322 1276 80.66 6598 79 4608 1165 79.82 5773 80 3114 787 79.83 3901 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 5832 162941 3.46 168773 2 2745 122499 2.19 125244 3 2580 116201 2.17 118781 4 1879 105686 1.75 107565 5 2105 100556 2.05 102661 6 2114 98466 2.10 100580 7 1659 96965 1.68 98624 8 1720 97120 1.74 98840 9 1425 92004 1.53 93429 10 1415 89199 1.56 90614 11 1375 85877 1.58 87252 12 1391 85716 1.60 87107 13 1281 81049 1.56 82330 14 1222 79776 1.51 80998 15 1305 79976 1.61 81281 16 1233 76722 1.58 77955 17 1178 73359 1.58 74537 18 1209 73018 1.63 74227 19 1159 69539 1.64 70698 20 1057 67545 1.54 68602 21 1112 66917 1.63 68029 22 1134 63412 1.76 64546 23 1044 62457 1.64 63501 24 1047 61517 1.67 62564 25 940 58684 1.58 59624 26 991 56414 1.73 57405 27 959 56899 1.66 57858 28 857 54043 1.56 54900 29 895 53487 1.65 54382 30 814 50868 1.58 51682 31 728 50278 1.43 51006 32 787 48738 1.59 49525 33 747 47928 1.53 48675 34 774 44837 1.70 45611 35 746 44038 1.67 44784 36 733 43112 1.67 43845 37 687 40628 1.66 41315 38 659 40146 1.61 40805 39 638 39576 1.59 40214 40 575 38046 1.49 38621 41 626 37103 1.66 37729 42 578 35948 1.58 36526 43 559 34417 1.60 34976 44 563 33188 1.67 33751 45 567 32987 1.69 33554 46 517 31690 1.61 32207 47 531 30774 1.70 31305 48 502 29648 1.67 30150 49 502 28696 1.72 29198 50 474 27706 1.68 28180 51 464 27425 1.66 27889 52 393 26248 1.48 26641 53 458 25002 1.80 25460 54 399 25083 1.57 25482 55 406 23962 1.67 24368 56 385 23427 1.62 23812 57 363 23302 1.53 23665 58 364 21636 1.65 22000 59 314 21103 1.47 21417 60 323 20732 1.53 21055 61 316 19764 1.57 20080 62 301 19492 1.52 19793 63 319 18900 1.66 19219 64 267 18049 1.46 18316 65 251 17484 1.42 17735 66 248 17304 1.41 17552 67 265 16203 1.61 16468 68 289 16116 1.76 16405 69 274 15447 1.74 15721 70 232 15126 1.51 15358 71 238 14546 1.61 14784 72 213 14078 1.49 14291 73 208 13653 1.50 13861 74 261 13146 1.95 13407 75 228 13004 1.72 13232 76 190 12356 1.51 12546 77 189 11524 1.61 11713 78 150 10728 1.38 10878 79 179 9118 1.93 9297 80 99 6127 1.59 6226 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 12466 504875 2.41 517341 2 8447 371159 2.23 379606 3 6524 342953 1.87 349477 4 5538 315981 1.72 321519 5 5692 300621 1.86 306313 6 5392 280965 1.88 286357 7 4280 275467 1.53 279747 8 4040 265687 1.50 269727 9 4093 262649 1.53 266742 10 3857 258787 1.47 262644 11 3764 243580 1.52 247344 12 3648 237190 1.51 240838 13 3456 233927 1.46 237383 14 3367 224397 1.48 227764 15 3399 221698 1.51 225097 16 3411 217735 1.54 221146 17 3254 208994 1.53 212248 18 3199 204969 1.54 208168 19 3075 200607 1.51 203682 20 2982 192335 1.53 195317 21 2943 189066 1.53 192009 22 2818 182640 1.52 185458 23 2763 178103 1.53 180866 24 2673 173099 1.52 175772 25 2658 169709 1.54 172367 26 2564 163348 1.55 165912 27 2474 159643 1.53 162117 28 2348 157005 1.47 159353 29 2368 149879 1.56 152247 30 2283 146857 1.53 149140 31 2366 146568 1.59 148934 32 2177 138184 1.55 140361 33 2107 134797 1.54 136904 34 2051 132248 1.53 134299 35 2113 128530 1.62 130643 36 1864 124893 1.47 126757 37 1875 121570 1.52 123445 38 1794 118412 1.49 120206 39 1779 115090 1.52 116869 40 1784 113198 1.55 114982 41 1671 108869 1.51 110540 42 1622 105389 1.52 107011 43 1592 103753 1.51 105345 44 1496 99484 1.48 100980 45 1464 95803 1.51 97267 46 1449 95389 1.50 96838 47 1429 92479 1.52 93908 48 1377 91717 1.48 93094 49 1404 90031 1.54 91435 50 1323 83665 1.56 84988 51 1276 81907 1.53 83183 52 1255 82246 1.50 83501 53 1236 76652 1.59 77888 54 1136 74117 1.51 75253 55 1153 72967 1.56 74120 56 1027 70700 1.43 71727 57 1153 70009 1.62 71162 58 1044 67066 1.53 68110 59 1041 66403 1.54 67444 60 976 63471 1.51 64447 61 936 61149 1.51 62085 62 920 58824 1.54 59744 63 884 57705 1.51 58589 64 859 57831 1.46 58690 65 820 54463 1.48 55283 66 811 52347 1.53 53158 67 760 51437 1.46 52197 68 800 51321 1.53 52121 69 813 49814 1.61 50627 70 684 47382 1.42 48066 71 740 46103 1.58 46843 72 685 45303 1.49 45988 73 662 43086 1.51 43748 74 743 41079 1.78 41822 75 605 39982 1.49 40587 76 669 38410 1.71 39079 77 522 36630 1.41 37152 78 537 34118 1.55 34655 79 441 30090 1.44 30531 80 310 19975 1.53 20285