zr2096_8_s1_R1_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 4908453 lines in total Total number of methylation call strings processed: 9816906 Final Cytosine Methylation Report ================================= Total number of C's analysed: 81716706 Total methylated C's in CpG context: 7694110 Total methylated C's in CHG context: 299912 Total methylated C's in CHH context: 925265 Total C to T conversions in CpG context: 2674951 Total C to T conversions in CHG context: 18378435 Total C to T conversions in CHH context: 51744033 C methylated in CpG context: 74.2% C methylated in CHG context: 1.6% C methylated in CHH context: 1.8%