CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 86644 33133 72.34 119777 2 93742 32142 74.47 125884 3 87792 31773 73.43 119565 4 87237 31483 73.48 118720 5 88603 31371 73.85 119974 6 88244 31473 73.71 119717 7 92013 33731 73.17 125744 8 90218 31998 73.82 122216 9 89227 31320 74.02 120547 10 92441 32150 74.20 124591 11 93807 32196 74.45 126003 12 93023 31906 74.46 124929 13 93309 31785 74.59 125094 14 93333 32426 74.22 125759 15 93552 31772 74.65 125324 16 94298 31898 74.72 126196 17 93341 32039 74.45 125380 18 93219 31363 74.83 124582 19 93679 32134 74.46 125813 20 93173 32251 74.29 125424 21 94080 31964 74.64 126044 22 93496 31748 74.65 125244 23 93864 31648 74.78 125512 24 93199 31531 74.72 124730 25 94764 31919 74.80 126683 26 93995 31736 74.76 125731 27 92839 30966 74.99 123805 28 93205 31102 74.98 124307 29 92233 31269 74.68 123502 30 91306 30983 74.66 122289 31 92529 31385 74.67 123914 32 91860 31118 74.70 122978 33 90639 30217 75.00 120856 34 91891 30712 74.95 122603 35 89958 30323 74.79 120281 36 88715 29054 75.33 117769 37 89185 29732 75.00 118917 38 88509 29478 75.02 117987 39 87501 29014 75.10 116515 40 86916 29335 74.77 116251 41 85466 28529 74.97 113995 42 83656 27720 75.11 111376 43 83186 27669 75.04 110855 44 82178 27741 74.76 109919 45 81066 27073 74.96 108139 46 81416 27250 74.92 108666 47 80316 27201 74.70 107517 48 78434 26195 74.96 104629 49 77766 26314 74.72 104080 50 76571 26148 74.54 102719 51 74452 25309 74.63 99761 52 73877 24820 74.85 98697 53 73017 24753 74.68 97770 54 72272 24665 74.56 96937 55 72271 24082 75.01 96353 56 71293 24048 74.78 95341 57 70210 23832 74.66 94042 58 68624 23361 74.60 91985 59 67069 23352 74.17 90421 60 65887 22720 74.36 88607 61 64850 22371 74.35 87221 62 63528 21847 74.41 85375 63 62419 21051 74.78 83470 64 61253 20894 74.57 82147 65 59997 20480 74.55 80477 66 58537 20011 74.52 78548 67 57747 20032 74.24 77779 68 56790 19466 74.47 76256 69 54740 18838 74.40 73578 70 54383 18903 74.21 73286 71 53158 18870 73.80 72028 72 51682 18150 74.01 69832 73 50555 17919 73.83 68474 74 49212 17609 73.65 66821 75 47467 16301 74.44 63768 76 46292 16007 74.31 62299 77 44190 15139 74.48 59329 78 40559 14232 74.02 54791 79 33187 11645 74.03 44832 80 15838 5716 73.48 21554 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 7620 210489 3.49 218109 2 4475 213740 2.05 218215 3 4169 220619 1.85 224788 4 3437 217042 1.56 220479 5 3981 215543 1.81 219524 6 3884 220907 1.73 224791 7 3487 220552 1.56 224039 8 3536 225882 1.54 229418 9 3291 222317 1.46 225608 10 3292 222049 1.46 225341 11 3435 219892 1.54 223327 12 3454 222362 1.53 225816 13 3727 218531 1.68 222258 14 3378 219516 1.52 222894 15 3505 225271 1.53 228776 16 3457 222527 1.53 225984 17 3432 220422 1.53 223854 18 3508 224831 1.54 228339 19 3552 222323 1.57 225875 20 3435 221408 1.53 224843 21 3492 224623 1.53 228115 22 3418 220743 1.52 224161 23 3460 221435 1.54 224895 24 3748 225120 1.64 228868 25 3483 220297 1.56 223780 26 3570 219837 1.60 223407 27 3563 223337 1.57 226900 28 3390 220443 1.51 223833 29 3486 219715 1.56 223201 30 3295 218005 1.49 221300 31 3453 217655 1.56 221108 32 3369 216089 1.54 219458 33 3544 217339 1.60 220883 34 3444 211177 1.60 214621 35 3366 210421 1.57 213787 36 3250 210236 1.52 213486 37 3185 205738 1.52 208923 38 3220 203702 1.56 206922 39 3221 205478 1.54 208699 40 3176 202135 1.55 205311 41 3229 199319 1.59 202548 42 3188 199814 1.57 203002 43 2919 196209 1.47 199128 44 2973 191250 1.53 194223 45 2933 193887 1.49 196820 46 3005 188402 1.57 191407 47 3134 186171 1.66 189305 48 2992 184816 1.59 187808 49 2785 181727 1.51 184512 50 2885 178760 1.59 181645 51 2959 179919 1.62 182878 52 2772 174310 1.57 177082 53 2688 171624 1.54 174312 54 2587 171732 1.48 174319 55 2506 167544 1.47 170050 56 2695 165841 1.60 168536 57 2558 165900 1.52 168458 58 2478 160851 1.52 163329 59 2618 157823 1.63 160441 60 2402 158322 1.49 160724 61 2317 152811 1.49 155128 62 2366 149698 1.56 152064 63 2337 149510 1.54 151847 64 2219 144477 1.51 146696 65 2205 141944 1.53 144149 66 2200 139266 1.56 141466 67 2113 136273 1.53 138386 68 2036 133620 1.50 135656 69 2080 131791 1.55 133871 70 1940 127440 1.50 129380 71 2032 125556 1.59 127588 72 1830 122825 1.47 124655 73 1861 119659 1.53 121520 74 1788 116435 1.51 118223 75 1853 115513 1.58 117366 76 1784 110165 1.59 111949 77 1663 104991 1.56 106654 78 1536 98226 1.54 99762 79 1235 79114 1.54 80349 80 629 37384 1.65 38013 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 17583 632053 2.71 649636 2 15693 629428 2.43 645121 3 14362 638935 2.20 653297 4 13271 637641 2.04 650912 5 13138 625757 2.06 638895 6 12735 610018 2.04 622753 7 12316 610124 1.98 622440 8 11595 601421 1.89 613016 9 11932 606251 1.93 618183 10 12028 609940 1.93 621968 11 11674 592713 1.93 604387 12 11919 592798 1.97 604717 13 12464 597206 2.04 609670 14 11598 592122 1.92 603720 15 11937 597991 1.96 609928 16 12317 602247 2.00 614564 17 11792 596799 1.94 608591 18 11803 600305 1.93 612108 19 12386 604205 2.01 616591 20 11975 596993 1.97 608968 21 12004 599446 1.96 611450 22 11978 598291 1.96 610269 23 11785 597980 1.93 609765 24 12097 596995 1.99 609092 25 11538 600245 1.89 611783 26 11340 593505 1.87 604845 27 11330 593347 1.87 604677 28 10822 595522 1.78 606344 29 10840 585680 1.82 596520 30 10574 585237 1.77 595811 31 10726 595760 1.77 606486 32 10273 579773 1.74 590046 33 10625 576253 1.81 586878 34 10630 579220 1.80 589850 35 10015 575596 1.71 585611 36 9788 571252 1.68 581040 37 9887 570932 1.70 580819 38 9507 562657 1.66 572164 39 9367 561663 1.64 571030 40 9418 560490 1.65 569908 41 9203 552950 1.64 562153 42 8992 547977 1.61 556969 43 8962 546893 1.61 555855 44 8801 534774 1.62 543575 45 8664 528557 1.61 537221 46 8432 529622 1.57 538054 47 8750 521508 1.65 530258 48 8408 522078 1.58 530486 49 8516 520264 1.61 528780 50 7980 502079 1.56 510059 51 8357 494825 1.66 503182 52 7867 498055 1.55 505922 53 7774 481248 1.59 489022 54 7625 474460 1.58 482085 55 7547 472431 1.57 479978 56 7269 463613 1.54 470882 57 7481 462381 1.59 469862 58 7220 454458 1.56 461678 59 7767 449260 1.70 457027 60 7008 441913 1.56 448921 61 6885 433013 1.57 439898 62 7129 423593 1.66 430722 63 6703 419241 1.57 425944 64 6719 417555 1.58 424274 65 6240 403753 1.52 409993 66 6264 396075 1.56 402339 67 6167 390296 1.56 396463 68 6141 385977 1.57 392118 69 6073 378460 1.58 384533 70 5744 369811 1.53 375555 71 6073 360473 1.66 366546 72 5620 355632 1.56 361252 73 5513 343942 1.58 349455 74 5156 333477 1.52 338633 75 5450 324820 1.65 330270 76 5168 317647 1.60 322815 77 4685 302132 1.53 306817 78 4419 281829 1.54 286248 79 3624 229987 1.55 233611 80 1702 106662 1.57 108364 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 54613 23095 70.28 77708 2 46861 17695 72.59 64556 3 42166 15795 72.75 57961 4 37810 14865 71.78 52675 5 37109 14246 72.26 51355 6 36260 13864 72.34 50124 7 37000 14700 71.57 51700 8 35598 13451 72.58 49049 9 34354 12808 72.84 47162 10 34303 12989 72.53 47292 11 34331 12744 72.93 47075 12 33046 12270 72.92 45316 13 32537 11757 73.46 44294 14 31672 11514 73.34 43186 15 31345 11176 73.72 42521 16 30650 11107 73.40 41757 17 29653 10821 73.26 40474 18 28575 10212 73.67 38787 19 27552 10328 72.73 37880 20 26807 9685 73.46 36492 21 26339 9600 73.29 35939 22 25980 9200 73.85 35180 23 24945 9031 73.42 33976 24 24465 8630 73.92 33095 25 24433 8577 74.02 33010 26 23131 8519 73.08 31650 27 22400 7900 73.93 30300 28 22032 7981 73.41 30013 29 21289 7715 73.40 29004 30 20527 7183 74.08 27710 31 20395 7464 73.21 27859 32 19708 7095 73.53 26803 33 19411 6898 73.78 26309 34 19457 6870 73.91 26327 35 18440 6588 73.68 25028 36 17609 6231 73.86 23840 37 17241 6097 73.88 23338 38 16707 5862 74.03 22569 39 16451 5875 73.69 22326 40 16107 5898 73.20 22005 41 15220 5593 73.13 20813 42 14889 5351 73.56 20240 43 14315 5091 73.77 19406 44 13945 5072 73.33 19017 45 13842 5012 73.42 18854 46 13492 4873 73.47 18365 47 13104 4800 73.19 17904 48 12539 4662 72.90 17201 49 12131 4489 72.99 16620 50 11937 4427 72.95 16364 51 11341 4069 73.60 15410 52 11245 4104 73.26 15349 53 10817 4056 72.73 14873 54 10448 3805 73.30 14253 55 10474 3885 72.94 14359 56 10197 3776 72.98 13973 57 10005 3714 72.93 13719 58 9685 3423 73.89 13108 59 9298 3467 72.84 12765 60 8801 3274 72.89 12075 61 8818 3293 72.81 12111 62 8279 3142 72.49 11421 63 8169 3004 73.11 11173 64 8013 2908 73.37 10921 65 7782 3000 72.18 10782 66 7623 2783 73.26 10406 67 7224 2775 72.25 9999 68 7101 2590 73.27 9691 69 6811 2635 72.10 9446 70 6754 2651 71.81 9405 71 6543 2561 71.87 9104 72 6299 2410 72.33 8709 73 6068 2410 71.57 8478 74 5993 2401 71.40 8394 75 5811 2149 73.00 7960 76 5627 2140 72.45 7767 77 5288 2104 71.54 7392 78 4922 1976 71.35 6898 79 4198 1692 71.27 5890 80 2763 1207 69.60 3970 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 4718 143792 3.18 148510 2 2583 113939 2.22 116522 3 2389 107162 2.18 109551 4 1737 99443 1.72 101180 5 1964 94635 2.03 96599 6 2013 93842 2.10 95855 7 1521 91935 1.63 93456 8 1552 92548 1.65 94100 9 1287 87226 1.45 88513 10 1265 85134 1.46 86399 11 1309 82265 1.57 83574 12 1211 81489 1.46 82700 13 1162 78044 1.47 79206 14 1182 76366 1.52 77548 15 1127 76122 1.46 77249 16 1145 73584 1.53 74729 17 1086 70604 1.51 71690 18 1033 69525 1.46 70558 19 1030 67179 1.51 68209 20 987 64827 1.50 65814 21 986 64067 1.52 65053 22 976 61066 1.57 62042 23 915 60506 1.49 61421 24 907 59614 1.50 60521 25 867 57025 1.50 57892 26 809 55647 1.43 56456 27 862 55630 1.53 56492 28 821 52954 1.53 53775 29 816 51710 1.55 52526 30 818 50376 1.60 51194 31 793 48719 1.60 49512 32 737 47570 1.53 48307 33 750 47052 1.57 47802 34 700 44881 1.54 45581 35 689 43517 1.56 44206 36 640 42240 1.49 42880 37 667 40477 1.62 41144 38 630 39960 1.55 40590 39 595 39603 1.48 40198 40 582 38092 1.50 38674 41 552 37379 1.46 37931 42 566 36250 1.54 36816 43 523 34853 1.48 35376 44 489 33571 1.44 34060 45 463 33422 1.37 33885 46 456 32369 1.39 32825 47 457 31602 1.43 32059 48 444 30341 1.44 30785 49 448 29541 1.49 29989 50 441 28373 1.53 28814 51 434 27976 1.53 28410 52 403 27342 1.45 27745 53 389 26438 1.45 26827 54 407 25948 1.54 26355 55 389 24729 1.55 25118 56 381 24237 1.55 24618 57 391 24416 1.58 24807 58 324 22921 1.39 23245 59 357 22283 1.58 22640 60 330 21976 1.48 22306 61 365 21046 1.70 21411 62 272 20589 1.30 20861 63 293 20106 1.44 20399 64 259 19770 1.29 20029 65 268 19136 1.38 19404 66 331 18528 1.76 18859 67 243 17989 1.33 18232 68 257 17725 1.43 17982 69 261 17132 1.50 17393 70 297 16455 1.77 16752 71 284 16061 1.74 16345 72 217 15488 1.38 15705 73 240 15195 1.55 15435 74 202 14868 1.34 15070 75 245 14513 1.66 14758 76 194 13733 1.39 13927 77 188 13175 1.41 13363 78 174 12340 1.39 12514 79 174 10643 1.61 10817 80 125 6942 1.77 7067 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 12156 449957 2.63 462113 2 8494 345138 2.40 353632 3 6298 321218 1.92 327516 4 5459 299702 1.79 305161 5 5294 285731 1.82 291025 6 5390 269738 1.96 275128 7 4298 263397 1.61 267695 8 3987 256366 1.53 260353 9 3934 253155 1.53 257089 10 3818 247808 1.52 251626 11 3563 234460 1.50 238023 12 3464 228965 1.49 232429 13 3364 225204 1.47 228568 14 3280 218268 1.48 221548 15 3312 215512 1.51 218824 16 3178 210882 1.48 214060 17 3017 204426 1.45 207443 18 3059 200206 1.50 203265 19 3000 195191 1.51 198191 20 2950 188504 1.54 191454 21 2795 185442 1.48 188237 22 2740 178596 1.51 181336 23 2791 175857 1.56 178648 24 2733 170930 1.57 173663 25 2599 168205 1.52 170804 26 2613 162552 1.58 165165 27 2529 158365 1.57 160894 28 2348 155627 1.49 157975 29 2352 151018 1.53 153370 30 2257 146859 1.51 149116 31 2396 147370 1.60 149766 32 2116 139970 1.49 142086 33 2245 135679 1.63 137924 34 2024 134019 1.49 136043 35 2018 130960 1.52 132978 36 1972 126753 1.53 128725 37 2037 125281 1.60 127318 38 1884 121738 1.52 123622 39 1829 118501 1.52 120330 40 1820 116831 1.53 118651 41 1739 113359 1.51 115098 42 1642 110911 1.46 112553 43 1659 108179 1.51 109838 44 1689 103860 1.60 105549 45 1593 101074 1.55 102667 46 1541 100881 1.50 102422 47 1481 97911 1.49 99392 48 1522 96742 1.55 98264 49 1524 95346 1.57 96870 50 1401 90079 1.53 91480 51 1374 87859 1.54 89233 52 1332 87495 1.50 88827 53 1299 82473 1.55 83772 54 1250 80343 1.53 81593 55 1244 79347 1.54 80591 56 1228 76936 1.57 78164 57 1320 75936 1.71 77256 58 1116 73065 1.50 74181 59 1137 72893 1.54 74030 60 1090 69882 1.54 70972 61 1093 67344 1.60 68437 62 1048 66263 1.56 67311 63 1016 64450 1.55 65466 64 1001 64411 1.53 65412 65 928 60871 1.50 61799 66 927 58755 1.55 59682 67 909 58089 1.54 58998 68 897 57992 1.52 58889 69 920 56198 1.61 57118 70 854 54083 1.55 54937 71 892 52758 1.66 53650 72 788 51957 1.49 52745 73 802 49714 1.59 50516 74 695 47936 1.43 48631 75 748 46375 1.59 47123 76 707 45252 1.54 45959 77 672 43299 1.53 43971 78 636 40299 1.55 40935 79 596 36070 1.63 36666 80 382 24453 1.54 24835