CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 106340 31475 77.16 137815 2 116147 30207 79.36 146354 3 108213 29568 78.54 137781 4 107155 29115 78.63 136270 5 108269 28955 78.90 137224 6 108818 29241 78.82 138059 7 112547 31140 78.33 143687 8 110939 29584 78.95 140523 9 109360 28433 79.37 137793 10 113319 29469 79.36 142788 11 115260 30046 79.32 145306 12 114020 29245 79.59 143265 13 115383 29076 79.87 144459 14 114896 29561 79.54 144457 15 114963 29170 79.76 144133 16 115712 29311 79.79 145023 17 115782 29548 79.67 145330 18 114031 28986 79.73 143017 19 115477 29099 79.87 144576 20 114654 29031 79.80 143685 21 115074 29065 79.84 144139 22 115511 28700 80.10 144211 23 116571 28751 80.22 145322 24 114423 28374 80.13 142797 25 116268 28979 80.05 145247 26 115086 28711 80.03 143797 27 113868 28503 79.98 142371 28 114405 28585 80.01 142990 29 113444 28525 79.91 141969 30 112453 27993 80.07 140446 31 114644 28836 79.90 143480 32 112453 28278 79.91 140731 33 111585 27803 80.05 139388 34 112727 27838 80.20 140565 35 111389 27663 80.11 139052 36 109041 26725 80.32 135766 37 109565 27566 79.90 137131 38 109299 27580 79.85 136879 39 108572 26976 80.10 135548 40 108312 27050 80.02 135362 41 106187 26327 80.13 132514 42 103662 25618 80.18 129280 43 104595 25432 80.44 130027 44 102953 25565 80.11 128518 45 101082 24851 80.27 125933 46 101028 25252 80.00 126280 47 100155 25258 79.86 125413 48 97740 24409 80.02 122149 49 97497 24534 79.90 122031 50 96479 24379 79.83 120858 51 93452 23613 79.83 117065 52 93618 23070 80.23 116688 53 91997 23152 79.89 115149 54 91858 22777 80.13 114635 55 91236 22729 80.06 113965 56 90234 22970 79.71 113204 57 89186 22385 79.94 111571 58 86515 21692 79.95 108207 59 84892 21804 79.56 106696 60 83622 21017 79.91 104639 61 82822 21179 79.64 104001 62 81131 20496 79.83 101627 63 78918 19915 79.85 98833 64 78457 19758 79.88 98215 65 77004 19412 79.87 96416 66 74438 19163 79.53 93601 67 74124 18653 79.89 92777 68 72620 18585 79.62 91205 69 70929 18113 79.66 89042 70 70090 18150 79.43 88240 71 68865 17813 79.45 86678 72 66944 17263 79.50 84207 73 65460 16967 79.42 82427 74 62998 16398 79.35 79396 75 61263 15768 79.53 77031 76 59975 15187 79.79 75162 77 57192 14734 79.52 71926 78 52303 13755 79.18 66058 79 42654 11098 79.35 53752 80 19664 5281 78.83 24945 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 8750 231912 3.64 240662 2 5067 235882 2.10 240949 3 4708 243465 1.90 248173 4 3993 240173 1.64 244166 5 4458 238512 1.83 242970 6 4380 243378 1.77 247758 7 4064 244676 1.63 248740 8 4147 246733 1.65 250880 9 3787 244135 1.53 247922 10 3922 242982 1.59 246904 11 3843 241519 1.57 245362 12 3899 244835 1.57 248734 13 4010 239474 1.65 243484 14 3918 240902 1.60 244820 15 3914 247638 1.56 251552 16 3901 244727 1.57 248628 17 3902 241461 1.59 245363 18 3855 248617 1.53 252472 19 3885 243914 1.57 247799 20 3874 242385 1.57 246259 21 3954 245684 1.58 249638 22 3688 243229 1.49 246917 23 4041 243376 1.63 247417 24 4084 246075 1.63 250159 25 3857 242979 1.56 246836 26 3938 240549 1.61 244487 27 3868 245214 1.55 249082 28 3961 241581 1.61 245542 29 3865 241766 1.57 245631 30 3735 239929 1.53 243664 31 3807 239936 1.56 243743 32 3829 237945 1.58 241774 33 3933 239525 1.62 243458 34 3893 233566 1.64 237459 35 3706 231195 1.58 234901 36 3672 232005 1.56 235677 37 3710 227063 1.61 230773 38 3635 225508 1.59 229143 39 3485 228217 1.50 231702 40 3568 223516 1.57 227084 41 3465 221033 1.54 224498 42 3430 221168 1.53 224598 43 3395 217492 1.54 220887 44 3380 213986 1.55 217366 45 3276 214920 1.50 218196 46 3267 210731 1.53 213998 47 3422 208205 1.62 211627 48 3363 206263 1.60 209626 49 3207 202553 1.56 205760 50 3135 199737 1.55 202872 51 3291 200976 1.61 204267 52 3130 195883 1.57 199013 53 3025 192467 1.55 195492 54 3029 192518 1.55 195547 55 2990 190107 1.55 193097 56 2982 186063 1.58 189045 57 2826 186998 1.49 189824 58 2967 182282 1.60 185249 59 2885 178577 1.59 181462 60 2908 179286 1.60 182194 61 2720 172963 1.55 175683 62 2879 169372 1.67 172251 63 2678 169804 1.55 172482 64 2598 164274 1.56 166872 65 2560 161165 1.56 163725 66 2541 159379 1.57 161920 67 2446 154788 1.56 157234 68 2400 151988 1.55 154388 69 2351 149808 1.55 152159 70 2301 146265 1.55 148566 71 2479 142560 1.71 145039 72 2141 141369 1.49 143510 73 2049 136847 1.48 138896 74 2121 134312 1.55 136433 75 2181 132342 1.62 134523 76 2003 126710 1.56 128713 77 1967 120794 1.60 122761 78 1777 112715 1.55 114492 79 1440 90071 1.57 91511 80 666 41370 1.58 42036 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 18632 694136 2.61 712768 2 16528 687763 2.35 704291 3 14991 698471 2.10 713462 4 13946 697847 1.96 711793 5 13590 684443 1.95 698033 6 13258 662946 1.96 676204 7 12449 665309 1.84 677758 8 12104 657632 1.81 669736 9 12264 661755 1.82 674019 10 12350 668704 1.81 681054 11 12339 649586 1.86 661925 12 12158 647931 1.84 660089 13 12848 655124 1.92 667972 14 12121 646413 1.84 658534 15 12239 654906 1.83 667145 16 12551 660352 1.87 672903 17 12165 654046 1.83 666211 18 12203 655801 1.83 668004 19 12420 663524 1.84 675944 20 12253 655384 1.84 667637 21 12460 657358 1.86 669818 22 12198 655407 1.83 667605 23 12067 655566 1.81 667633 24 12596 654545 1.89 667141 25 12094 660300 1.80 672394 26 12046 651978 1.81 664024 27 11631 652617 1.75 664248 28 11485 655529 1.72 667014 29 11478 645435 1.75 656913 30 11126 643228 1.70 654354 31 11292 657429 1.69 668721 32 10956 639454 1.68 650410 33 11354 635036 1.76 646390 34 11527 640053 1.77 651580 35 10615 636098 1.64 646713 36 10398 631933 1.62 642331 37 10259 632529 1.60 642788 38 10128 624370 1.60 634498 39 9847 621237 1.56 631084 40 9902 623521 1.56 633423 41 9731 616182 1.55 625913 42 9765 607571 1.58 617336 43 9498 607931 1.54 617429 44 9351 594718 1.55 604069 45 9293 590612 1.55 599905 46 9491 592377 1.58 601868 47 9376 583631 1.58 593007 48 9153 582304 1.55 591457 49 8863 580979 1.50 589842 50 8652 562310 1.52 570962 51 9035 553858 1.61 562893 52 8717 558165 1.54 566882 53 8444 539262 1.54 547706 54 8231 533714 1.52 541945 55 8231 531575 1.52 539806 56 8207 521561 1.55 529768 57 8075 518935 1.53 527010 58 7941 511045 1.53 518986 59 8336 505061 1.62 513397 60 7691 498210 1.52 505901 61 7665 489150 1.54 496815 62 7684 478191 1.58 485875 63 7315 474373 1.52 481688 64 7265 473692 1.51 480957 65 7266 457781 1.56 465047 66 6761 449014 1.48 455775 67 6976 444935 1.54 451911 68 6774 440249 1.52 447023 69 6501 430478 1.49 436979 70 6294 421269 1.47 427563 71 6625 412347 1.58 418972 72 6261 404240 1.53 410501 73 5960 393281 1.49 399241 74 5647 382217 1.46 387864 75 6086 371199 1.61 377285 76 5828 362393 1.58 368221 77 5367 346035 1.53 351402 78 4913 320420 1.51 325333 79 4073 261596 1.53 265669 80 1842 116916 1.55 118758 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 69686 22279 75.77 91965 2 60656 16975 78.13 77631 3 54658 15500 77.91 70158 4 50303 14337 77.82 64640 5 48857 13828 77.94 62685 6 47961 13570 77.95 61531 7 48514 14500 76.99 63014 8 46644 12934 78.29 59578 9 45153 12587 78.20 57740 10 45328 12612 78.23 57940 11 45518 12299 78.73 57817 12 43421 12109 78.19 55530 13 42969 11505 78.88 54474 14 42163 11473 78.61 53636 15 41674 10869 79.31 52543 16 40675 10777 79.05 51452 17 39013 10633 78.58 49646 18 37592 10073 78.87 47665 19 36503 9856 78.74 46359 20 35864 9530 79.01 45394 21 34847 9331 78.88 44178 22 34008 9089 78.91 43097 23 33593 8896 79.06 42489 24 32826 8638 79.17 41464 25 32446 8565 79.12 41011 26 31030 8208 79.08 39238 27 29823 8025 78.80 37848 28 29314 7850 78.88 37164 29 28539 7514 79.16 36053 30 27440 7112 79.42 34552 31 27388 7158 79.28 34546 32 26693 6923 79.41 33616 33 26085 6904 79.07 32989 34 25636 6770 79.11 32406 35 24708 6537 79.08 31245 36 23511 6321 78.81 29832 37 22983 6073 79.10 29056 38 22702 6055 78.94 28757 39 21993 5847 79.00 27840 40 21546 5946 78.37 27492 41 20392 5439 78.94 25831 42 19809 5395 78.59 25204 43 19047 5209 78.52 24256 44 19224 5060 79.16 24284 45 18375 4992 78.64 23367 46 18158 4809 79.06 22967 47 17824 4787 78.83 22611 48 16971 4602 78.67 21573 49 16372 4523 78.35 20895 50 15901 4306 78.69 20207 51 15401 4029 79.26 19430 52 15252 4099 78.82 19351 53 14990 4040 78.77 19030 54 14330 3975 78.28 18305 55 14088 3754 78.96 17842 56 13589 3807 78.12 17396 57 13361 3614 78.71 16975 58 12872 3509 78.58 16381 59 12440 3420 78.44 15860 60 11993 3274 78.56 15267 61 11780 3214 78.56 14994 62 11532 3138 78.61 14670 63 11095 2951 78.99 14046 64 10855 2987 78.42 13842 65 10769 2896 78.81 13665 66 9945 2792 78.08 12737 67 9861 2737 78.27 12598 68 9563 2623 78.48 12186 69 9440 2724 77.61 12164 70 9141 2512 78.44 11653 71 9005 2607 77.55 11612 72 8481 2553 76.86 11034 73 8442 2418 77.73 10860 74 8184 2286 78.17 10470 75 7702 2180 77.94 9882 76 7509 2169 77.59 9678 77 7074 2029 77.71 9103 78 6657 2021 76.71 8678 79 5593 1712 76.56 7305 80 3668 1213 75.15 4881 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 5867 161378 3.51 167245 2 3029 129789 2.28 132818 3 2937 123679 2.32 126616 4 2007 116424 1.69 118431 5 2330 110432 2.07 112762 6 2388 108301 2.16 110689 7 1819 107333 1.67 109152 8 1931 107738 1.76 109669 9 1517 101437 1.47 102954 10 1510 99457 1.50 100967 11 1515 96221 1.55 97736 12 1459 95611 1.50 97070 13 1420 91545 1.53 92965 14 1380 89901 1.51 91281 15 1329 89574 1.46 90903 16 1301 86690 1.48 87991 17 1253 82941 1.49 84194 18 1295 82254 1.55 83549 19 1267 79109 1.58 80376 20 1216 76422 1.57 77638 21 1202 75795 1.56 76997 22 1108 72324 1.51 73432 23 1142 71656 1.57 72798 24 1087 70709 1.51 71796 25 1074 67187 1.57 68261 26 1022 65847 1.53 66869 27 1068 65432 1.61 66500 28 989 62492 1.56 63481 29 930 62108 1.48 63038 30 864 59215 1.44 60079 31 935 58291 1.58 59226 32 924 55872 1.63 56796 33 897 55414 1.59 56311 34 830 53252 1.53 54082 35 820 51918 1.55 52738 36 768 50385 1.50 51153 37 749 48657 1.52 49406 38 740 47234 1.54 47974 39 691 46675 1.46 47366 40 666 45136 1.45 45802 41 674 44092 1.51 44766 42 676 43084 1.54 43760 43 656 41873 1.54 42529 44 613 40230 1.50 40843 45 572 39592 1.42 40164 46 561 38275 1.44 38836 47 633 37564 1.66 38197 48 560 36467 1.51 37027 49 553 34875 1.56 35428 50 562 33640 1.64 34202 51 528 33809 1.54 34337 52 518 32271 1.58 32789 53 465 31377 1.46 31842 54 482 30826 1.54 31308 55 464 30028 1.52 30492 56 465 29367 1.56 29832 57 497 29185 1.67 29682 58 423 27440 1.52 27863 59 431 26771 1.58 27202 60 395 26631 1.46 27026 61 475 24940 1.87 25415 62 403 24344 1.63 24747 63 395 24362 1.60 24757 64 329 23138 1.40 23467 65 356 22660 1.55 23016 66 327 22190 1.45 22517 67 323 21252 1.50 21575 68 306 21090 1.43 21396 69 305 20379 1.47 20684 70 326 19758 1.62 20084 71 313 19271 1.60 19584 72 268 18770 1.41 19038 73 299 17986 1.64 18285 74 275 17910 1.51 18185 75 266 17403 1.51 17669 76 255 16620 1.51 16875 77 228 15615 1.44 15843 78 237 14767 1.58 15004 79 183 12541 1.44 12724 80 132 8645 1.50 8777 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 13153 503392 2.55 516545 2 9666 391733 2.41 401399 3 7330 367585 1.96 374915 4 6253 343526 1.79 349779 5 6329 329375 1.89 335704 6 6225 310257 1.97 316482 7 4659 304194 1.51 308853 8 4660 295169 1.55 299829 9 4375 291987 1.48 296362 10 4419 288378 1.51 292797 11 4228 272888 1.53 277116 12 3954 267078 1.46 271032 13 3922 263646 1.47 267568 14 3797 254844 1.47 258641 15 3748 250863 1.47 254611 16 3593 246950 1.43 250543 17 3629 238479 1.50 242108 18 3460 234505 1.45 237965 19 3406 229772 1.46 233178 20 3377 222265 1.50 225642 21 3195 218065 1.44 221260 22 3167 210309 1.48 213476 23 3170 206120 1.51 209290 24 2933 201117 1.44 204050 25 3022 197277 1.51 200299 26 2878 191892 1.48 194770 27 3177 186477 1.68 189654 28 2856 184092 1.53 186948 29 2579 177586 1.43 180165 30 2595 173227 1.48 175822 31 2867 173064 1.63 175931 32 2436 164256 1.46 166692 33 2507 160644 1.54 163151 34 2325 158420 1.45 160745 35 2342 155015 1.49 157357 36 2325 150458 1.52 152783 37 2290 148294 1.52 150584 38 2228 143704 1.53 145932 39 2125 139685 1.50 141810 40 2011 138538 1.43 140549 41 1989 134847 1.45 136836 42 2003 130497 1.51 132500 43 1919 128475 1.47 130394 44 1848 123558 1.47 125406 45 1872 119824 1.54 121696 46 1811 119852 1.49 121663 47 1797 115358 1.53 117155 48 1719 114909 1.47 116628 49 1735 112738 1.52 114473 50 1581 106880 1.46 108461 51 1527 104012 1.45 105539 52 1607 103472 1.53 105079 53 1461 97559 1.48 99020 54 1463 95244 1.51 96707 55 1409 94099 1.48 95508 56 1369 91409 1.48 92778 57 1492 90091 1.63 91583 58 1328 86797 1.51 88125 59 1329 86736 1.51 88065 60 1229 83379 1.45 84608 61 1358 80243 1.66 81601 62 1187 78405 1.49 79592 63 1209 76875 1.55 78084 64 1177 76838 1.51 78015 65 1081 73071 1.46 74152 66 1025 70364 1.44 71389 67 1030 69708 1.46 70738 68 1068 69312 1.52 70380 69 1055 67225 1.55 68280 70 956 64419 1.46 65375 71 1028 62772 1.61 63800 72 885 62275 1.40 63160 73 897 58985 1.50 59882 74 852 57123 1.47 57975 75 793 55365 1.41 56158 76 827 53654 1.52 54481 77 738 51424 1.41 52162 78 743 48241 1.52 48984 79 654 42922 1.50 43576 80 451 28484 1.56 28935