Bismark

Bismark Processing Report

/Volumes/web/Athaliana/20180411_trimgalore_10bp_Cvirginica_MBD/zr2096_7_s1_R1_val_1.fq.gz and /Volumes/web/Athaliana/20180411_trimgalore_10bp_Cvirginica_MBD/zr2096_7_s1_R2_val_2.fq.gz

Data processed at 12:50 on 2018-05-29


Alignment

Sequence pairs analysed in total 29273635
Paired-end alignments with a unique best hit 5560803
Pairs without alignments under any condition 20689615
Pairs that did not map uniquely 3023217
Genomic sequence context not extractable (edges of chromosomes) 0

Cytosine Methylation

Total C's analysed 151315957
Methylated C's in CpG context 16241701
Methylated C's in CHG context 564553
Methylated C's in CHH context 1639184
Methylated C's in Unknown context 10115
Unmethylated C's in CpG context 4088959
Unmethylated C's in CHG context 34291041
Unmethylated C's in CHH context 94490519
Unmethylated C's in Unknown context 92705
Percentage methylation (CpG context) 79.9%
Percentage methylation (CHG context) 1.6%
Percentage methylation (CHH context) 1.7%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 1412253 original top strand
CTOT 1368227 complementary to original top strand
CTOB 1366318 complementary to original bottom strand
OB 1414005 original bottom strand