CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 105174 26898 79.63 132072 2 113495 26109 81.30 139604 3 106703 25188 80.90 131891 4 105743 25038 80.86 130781 5 106966 24899 81.12 131865 6 106805 24642 81.25 131447 7 111318 25917 81.11 137235 8 108585 25324 81.09 133909 9 108277 24976 81.26 133253 10 112005 25073 81.71 137078 11 114254 25832 81.56 140086 12 113782 25347 81.78 139129 13 114822 24972 82.14 139794 14 113389 25298 81.76 138687 15 112634 25090 81.78 137724 16 114277 25242 81.91 139519 17 112584 25219 81.70 137803 18 112625 24713 82.01 137338 19 113080 24839 81.99 137919 20 113964 25417 81.76 139381 21 113715 24893 82.04 138608 22 113388 24890 82.00 138278 23 113894 25260 81.85 139154 24 112434 24709 81.98 137143 25 113902 24842 82.10 138744 26 113291 25372 81.70 138663 27 111266 24584 81.90 135850 28 111709 24763 81.85 136472 29 110537 24594 81.80 135131 30 109360 24187 81.89 133547 31 110959 24623 81.84 135582 32 109623 23972 82.06 133595 33 108333 23813 81.98 132146 34 108451 24003 81.88 132454 35 106834 23352 82.06 130186 36 104994 22948 82.06 127942 37 105260 23080 82.02 128340 38 103964 22691 82.08 126655 39 103070 22054 82.37 125124 40 102693 22505 82.02 125198 41 100002 21903 82.03 121905 42 98024 21468 82.03 119492 43 97601 21137 82.20 118738 44 96379 21131 82.02 117510 45 94427 20453 82.20 114880 46 94666 20682 82.07 115348 47 92539 19945 82.27 112484 48 90993 19349 82.46 110342 49 90009 19500 82.19 109509 50 87832 19781 81.62 107613 51 85209 18487 82.17 103696 52 84505 18465 82.07 102970 53 83229 18136 82.11 101365 54 82739 18044 82.10 100783 55 81400 17760 82.09 99160 56 80446 17465 82.16 97911 57 79082 16994 82.31 96076 58 77618 16899 82.12 94517 59 75240 16783 81.76 92023 60 73879 16079 82.13 89958 61 72603 16052 81.89 88655 62 70410 15494 81.96 85904 63 68870 14829 82.28 83699 64 67784 14750 82.13 82534 65 66203 14447 82.09 80650 66 64488 14039 82.12 78527 67 63685 13682 82.32 77367 68 61829 13493 82.09 75322 69 60361 13215 82.04 73576 70 59207 12942 82.06 72149 71 58243 12837 81.94 71080 72 55391 12208 81.94 67599 73 54748 12281 81.68 67029 74 52800 12022 81.45 64822 75 50949 11033 82.20 61982 76 49421 10856 81.99 60277 77 47024 10400 81.89 57424 78 43555 9366 82.30 52921 79 35291 7852 81.80 43143 80 16588 3776 81.46 20364 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 7201 214992 3.24 222193 2 4273 218985 1.91 223258 3 3794 226304 1.65 230098 4 2989 225378 1.31 228367 5 3351 221716 1.49 225067 6 3331 225770 1.45 229101 7 2980 228194 1.29 231174 8 3086 231455 1.32 234541 9 2781 228506 1.20 231287 10 2797 228999 1.21 231796 11 2899 226809 1.26 229708 12 2915 230667 1.25 233582 13 3023 225690 1.32 228713 14 2826 225531 1.24 228357 15 2839 230074 1.22 232913 16 2906 227443 1.26 230349 17 2953 226414 1.29 229367 18 2925 231688 1.25 234613 19 2912 229565 1.25 232477 20 2851 227781 1.24 230632 21 2930 230677 1.25 233607 22 2822 227575 1.22 230397 23 2926 227979 1.27 230905 24 2998 229876 1.29 232874 25 2799 227354 1.22 230153 26 2948 224257 1.30 227205 27 2896 228217 1.25 231113 28 2775 225205 1.22 227980 29 2904 224057 1.28 226961 30 2856 223016 1.26 225872 31 2815 221540 1.25 224355 32 2785 218920 1.26 221705 33 2893 220738 1.29 223631 34 2945 214352 1.36 217297 35 2670 212080 1.24 214750 36 2740 212467 1.27 215207 37 2696 207064 1.29 209760 38 2638 204806 1.27 207444 39 2437 207276 1.16 209713 40 2586 202507 1.26 205093 41 2526 199010 1.25 201536 42 2428 198487 1.21 200915 43 2397 193842 1.22 196239 44 2360 189554 1.23 191914 45 2324 191272 1.20 193596 46 2241 185110 1.20 187351 47 2436 182542 1.32 184978 48 2192 180306 1.20 182498 49 2258 176455 1.26 178713 50 2165 173434 1.23 175599 51 2364 173318 1.35 175682 52 2092 168897 1.22 170989 53 2107 165199 1.26 167306 54 1970 163920 1.19 165890 55 2014 161219 1.23 163233 56 2001 157984 1.25 159985 57 2052 158185 1.28 160237 58 1805 152005 1.17 153810 59 2070 149634 1.36 151704 60 1829 149704 1.21 151533 61 1756 143177 1.21 144933 62 1892 140286 1.33 142178 63 1780 140322 1.25 142102 64 1687 134603 1.24 136290 65 1618 131486 1.22 133104 66 1541 130535 1.17 132076 67 1525 125649 1.20 127174 68 1558 122277 1.26 123835 69 1415 120350 1.16 121765 70 1453 116881 1.23 118334 71 1484 114383 1.28 115867 72 1336 112173 1.18 113509 73 1347 108250 1.23 109597 74 1275 105025 1.20 106300 75 1374 103578 1.31 104952 76 1251 98493 1.25 99744 77 1217 94152 1.28 95369 78 1083 87088 1.23 88171 79 881 70344 1.24 71225 80 429 33069 1.28 33498 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 16598 632597 2.56 649195 2 14445 631083 2.24 645528 3 12964 640703 1.98 653667 4 11967 640370 1.83 652337 5 11998 625175 1.88 637173 6 11253 611089 1.81 622342 7 10603 608842 1.71 619445 8 10276 600739 1.68 611015 9 10474 605111 1.70 615585 10 10430 609943 1.68 620373 11 10527 594845 1.74 605372 12 10263 594403 1.70 604666 13 11287 600440 1.85 611727 14 10094 595142 1.67 605236 15 10494 600916 1.72 611410 16 10594 607396 1.71 617990 17 10593 600137 1.73 610730 18 10399 605135 1.69 615534 19 10628 608907 1.72 619535 20 10448 601901 1.71 612349 21 10640 603100 1.73 613740 22 10358 602819 1.69 613177 23 10105 602446 1.65 612551 24 10449 601551 1.71 612000 25 9866 604690 1.61 614556 26 9791 595569 1.62 605360 27 9374 595630 1.55 605004 28 9234 597587 1.52 606821 29 9022 588854 1.51 597876 30 8789 585679 1.48 594468 31 8774 595338 1.45 604112 32 8487 579063 1.44 587550 33 8612 574233 1.48 582845 34 8703 575850 1.49 584553 35 7754 568662 1.35 576416 36 7600 564556 1.33 572156 37 7571 563471 1.33 571042 38 7254 552863 1.30 560117 39 7072 550623 1.27 557695 40 7168 548882 1.29 556050 41 7117 539463 1.30 546580 42 6959 532896 1.29 539855 43 6763 530419 1.26 537182 44 6576 518405 1.25 524981 45 6375 511930 1.23 518305 46 6386 510596 1.24 516982 47 6499 500039 1.28 506538 48 6101 498596 1.21 504697 49 6209 497170 1.23 503379 50 5925 477822 1.22 483747 51 6118 469066 1.29 475184 52 5670 472855 1.18 478525 53 5751 453211 1.25 458962 54 5516 447521 1.22 453037 55 5366 444246 1.19 449612 56 5222 433866 1.19 439088 57 5258 429388 1.21 434646 58 5113 422036 1.20 427149 59 5709 416021 1.35 421730 60 4979 406724 1.21 411703 61 4935 399295 1.22 404230 62 4993 388201 1.27 393194 63 4625 383271 1.19 387896 64 4569 380077 1.19 384646 65 4447 367002 1.20 371449 66 4356 357225 1.20 361581 67 4293 353061 1.20 357354 68 4188 347057 1.19 351245 69 4009 338658 1.17 342667 70 3928 328974 1.18 332902 71 4097 320090 1.26 324187 72 3676 314094 1.16 317770 73 3505 303775 1.14 307280 74 3426 293559 1.15 296985 75 3751 285191 1.30 288942 76 3462 278928 1.23 282390 77 3004 263006 1.13 266010 78 2937 244372 1.19 247309 79 2378 199856 1.18 202234 80 1070 92046 1.15 93116 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 63430 17813 78.07 81243 2 51644 12613 80.37 64257 3 45733 10895 80.76 56628 4 40434 9895 80.34 50329 5 39243 9445 80.60 48688 6 38264 9198 80.62 47462 7 39150 9299 80.81 48449 8 36897 8789 80.76 45686 9 35743 8427 80.92 44170 10 35595 8141 81.39 43736 11 35722 8138 81.45 43860 12 34263 7745 81.56 42008 13 33367 7535 81.58 40902 14 32664 7329 81.67 39993 15 31816 7035 81.89 38851 16 31149 6802 82.08 37951 17 30134 6591 82.05 36725 18 28418 6378 81.67 34796 19 27890 6197 81.82 34087 20 26974 6066 81.64 33040 21 26203 5954 81.48 32157 22 25355 5513 82.14 30868 23 24962 5422 82.16 30384 24 23983 5255 82.03 29238 25 23752 5221 81.98 28973 26 22579 5164 81.39 27743 27 21614 4838 81.71 26452 28 21400 4557 82.44 25957 29 20445 4593 81.66 25038 30 19639 4181 82.45 23820 31 19537 4248 82.14 23785 32 18883 4171 81.91 23054 33 18281 4057 81.84 22338 34 18209 3966 82.11 22175 35 17364 3712 82.39 21076 36 16389 3588 82.04 19977 37 16154 3342 82.86 19496 38 16062 3445 82.34 19507 39 15247 3271 82.34 18518 40 15019 3059 83.08 18078 41 14327 3149 81.98 17476 42 13510 2950 82.08 16460 43 13247 2991 81.58 16238 44 12923 2864 81.86 15787 45 12640 2579 83.05 15219 46 12379 2513 83.13 14892 47 12094 2626 82.16 14720 48 11370 2487 82.05 13857 49 10931 2387 82.08 13318 50 10598 2262 82.41 12860 51 10236 2210 82.24 12446 52 9891 2082 82.61 11973 53 9817 2161 81.96 11978 54 9525 1997 82.67 11522 55 9155 2015 81.96 11170 56 8732 1943 81.80 10675 57 8857 1935 82.07 10792 58 8413 1835 82.09 10248 59 7809 1741 81.77 9550 60 7756 1648 82.48 9404 61 7533 1746 81.18 9279 62 7431 1681 81.55 9112 63 7153 1488 82.78 8641 64 6983 1476 82.55 8459 65 6824 1437 82.61 8261 66 6489 1404 82.21 7893 67 6394 1299 83.11 7693 68 6144 1322 82.29 7466 69 5999 1298 82.21 7297 70 5738 1229 82.36 6967 71 5676 1251 81.94 6927 72 5378 1234 81.34 6612 73 5019 1224 80.39 6243 74 5073 1121 81.90 6194 75 4823 1100 81.43 5923 76 4628 1044 81.59 5672 77 4342 917 82.56 5259 78 4034 941 81.09 4975 79 3446 816 80.85 4262 80 2312 591 79.64 2903 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 4333 137544 3.05 141877 2 2088 103572 1.98 105660 3 2038 95356 2.09 97394 4 1278 88528 1.42 89806 5 1445 82333 1.72 83778 6 1509 80813 1.83 82322 7 1157 79971 1.43 81128 8 1128 80361 1.38 81489 9 904 74477 1.20 75381 10 893 72812 1.21 73705 11 907 70362 1.27 71269 12 853 70160 1.20 71013 13 784 66708 1.16 67492 14 844 64753 1.29 65597 15 745 64645 1.14 65390 16 797 61702 1.28 62499 17 739 59085 1.24 59824 18 733 58495 1.24 59228 19 698 56041 1.23 56739 20 661 53785 1.21 54446 21 623 53240 1.16 53863 22 618 50509 1.21 51127 23 607 49731 1.21 50338 24 554 48732 1.12 49286 25 618 46579 1.31 47197 26 582 44767 1.28 45349 27 583 44332 1.30 44915 28 511 42892 1.18 43403 29 473 41686 1.12 42159 30 566 40066 1.39 40632 31 485 39354 1.22 39839 32 465 37659 1.22 38124 33 498 37356 1.32 37854 34 472 35248 1.32 35720 35 428 34150 1.24 34578 36 437 33231 1.30 33668 37 369 31711 1.15 32080 38 385 30826 1.23 31211 39 338 31031 1.08 31369 40 321 29368 1.08 29689 41 342 28283 1.19 28625 42 335 27876 1.19 28211 43 316 26479 1.18 26795 44 325 25538 1.26 25863 45 276 25354 1.08 25630 46 271 24178 1.11 24449 47 266 23569 1.12 23835 48 255 22514 1.12 22769 49 291 21810 1.32 22101 50 252 21112 1.18 21364 51 244 20610 1.17 20854 52 224 20003 1.11 20227 53 229 19294 1.17 19523 54 197 18833 1.04 19030 55 215 18284 1.16 18499 56 212 17664 1.19 17876 57 223 17811 1.24 18034 58 196 16851 1.15 17047 59 210 15972 1.30 16182 60 173 16265 1.05 16438 61 170 15062 1.12 15232 62 158 14667 1.07 14825 63 149 14462 1.02 14611 64 163 14094 1.14 14257 65 185 13435 1.36 13620 66 166 13215 1.24 13381 67 149 12788 1.15 12937 68 149 12159 1.21 12308 69 139 11853 1.16 11992 70 129 11552 1.10 11681 71 142 11141 1.26 11283 72 142 10749 1.30 10891 73 145 10551 1.36 10696 74 114 10036 1.12 10150 75 123 9868 1.23 9991 76 95 9373 1.00 9468 77 113 8892 1.25 9005 78 105 8400 1.23 8505 79 96 7217 1.31 7313 80 63 4727 1.32 4790 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 9799 422499 2.27 432298 2 6488 302896 2.10 309384 3 4730 277139 1.68 281869 4 3841 254370 1.49 258211 5 3794 242338 1.54 246132 6 3794 227420 1.64 231214 7 2868 221216 1.28 224084 8 2692 214310 1.24 217002 9 2508 212070 1.17 214578 10 2472 207849 1.18 210321 11 2391 195478 1.21 197869 12 2261 190140 1.18 192401 13 2172 186603 1.15 188775 14 2087 180309 1.14 182396 15 2037 177422 1.14 179459 16 1980 173277 1.13 175257 17 1915 166535 1.14 168450 18 1842 164415 1.11 166257 19 1855 159210 1.15 161065 20 1793 153336 1.16 155129 21 1708 149530 1.13 151238 22 1738 143832 1.19 145570 23 1705 140821 1.20 142526 24 1549 136737 1.12 138286 25 1600 133404 1.19 135004 26 1499 128175 1.16 129674 27 1583 124940 1.25 126523 28 1435 121849 1.16 123284 29 1366 117993 1.14 119359 30 1367 114195 1.18 115562 31 1473 114175 1.27 115648 32 1267 107844 1.16 109111 33 1282 104484 1.21 105766 34 1257 101808 1.22 103065 35 1132 99587 1.12 100719 36 1086 97699 1.10 98785 37 1124 94353 1.18 95477 38 1092 91210 1.18 92302 39 1003 88992 1.11 89995 40 1003 87298 1.14 88301 41 990 84794 1.15 85784 42 916 81240 1.11 82156 43 913 79955 1.13 80868 44 916 76769 1.18 77685 45 909 74984 1.20 75893 46 815 73616 1.09 74431 47 868 71079 1.21 71947 48 780 70814 1.09 71594 49 777 69326 1.11 70103 50 779 64786 1.19 65565 51 725 62754 1.14 63479 52 721 62795 1.14 63516 53 686 59038 1.15 59724 54 672 57320 1.16 57992 55 653 56110 1.15 56763 56 644 54201 1.17 54845 57 632 53548 1.17 54180 58 581 50844 1.13 51425 59 575 51174 1.11 51749 60 588 48797 1.19 49385 61 660 46791 1.39 47451 62 528 45337 1.15 45865 63 535 44576 1.19 45111 64 459 44192 1.03 44651 65 482 41665 1.14 42147 66 444 40051 1.10 40495 67 450 39695 1.12 40145 68 433 40069 1.07 40502 69 433 38494 1.11 38927 70 463 36667 1.25 37130 71 423 35536 1.18 35959 72 378 35118 1.06 35496 73 367 33114 1.10 33481 74 359 31881 1.11 32240 75 327 31065 1.04 31392 76 344 29806 1.14 30150 77 336 28538 1.16 28874 78 292 26841 1.08 27133 79 286 23856 1.18 24142 80 190 15639 1.20 15829