CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 106523 40122 72.64 146645 2 114173 39060 74.51 153233 3 111218 37975 74.55 149193 4 111717 37362 74.94 149079 5 112491 37648 74.92 150139 6 112447 37618 74.93 150065 7 116411 40852 74.02 157263 8 114238 38628 74.73 152866 9 113172 37533 75.10 150705 10 117882 38549 75.36 156431 11 119711 39107 75.38 158818 12 118437 38086 75.67 156523 13 119931 38434 75.73 158365 14 119523 38587 75.59 158110 15 119542 38180 75.79 157722 16 120476 38250 75.90 158726 17 120494 38554 75.76 159048 18 118942 37768 75.90 156710 19 119788 38198 75.82 157986 20 120059 38028 75.94 158087 21 119676 38063 75.87 157739 22 120731 37864 76.13 158595 23 121491 38252 76.05 159743 24 119361 37410 76.14 156771 25 121137 38383 75.94 159520 26 119696 38189 75.81 157885 27 118792 37356 76.08 156148 28 119035 37544 76.02 156579 29 118184 37360 75.98 155544 30 116483 36673 76.06 153156 31 118405 37446 75.97 155851 32 117293 37097 75.97 154390 33 116004 36613 76.01 152617 34 117051 36313 76.32 153364 35 115823 36264 76.16 152087 36 113416 35298 76.26 148714 37 113908 35437 76.27 149345 38 113211 35596 76.08 148807 39 111549 34867 76.19 146416 40 111562 35137 76.05 146699 41 108517 33977 76.16 142494 42 106467 33523 76.05 139990 43 107084 33404 76.22 140488 44 105207 33043 76.10 138250 45 103753 32231 76.30 135984 46 103526 32412 76.16 135938 47 101741 32612 75.73 134353 48 99049 31457 75.90 130506 49 99416 31131 76.15 130547 50 96707 30922 75.77 127629 51 94140 29825 75.94 123965 52 93934 29417 76.15 123351 53 92988 29510 75.91 122498 54 91673 29099 75.91 120772 55 90767 28696 75.98 119463 56 89294 28702 75.68 117996 57 88864 28043 76.01 116907 58 85699 27553 75.67 113252 59 84101 27388 75.43 111489 60 82458 26342 75.79 108800 61 81600 26331 75.60 107931 62 79742 25669 75.65 105411 63 77122 25121 75.43 102243 64 76268 24511 75.68 100779 65 74795 23742 75.91 98537 66 73140 23490 75.69 96630 67 71861 23105 75.67 94966 68 70540 22489 75.83 93029 69 67874 21925 75.58 89799 70 67481 22205 75.24 89686 71 65742 21196 75.62 86938 72 63449 20908 75.21 84357 73 62006 20400 75.24 82406 74 60709 19765 75.44 80474 75 57830 18884 75.38 76714 76 56590 18486 75.38 75076 77 53709 17606 75.31 71315 78 49438 16521 74.95 65959 79 40324 13431 75.01 53755 80 19088 6546 74.46 25634 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 7161 252574 2.76 259735 2 5123 257489 1.95 262612 3 4646 265421 1.72 270067 4 4084 259983 1.55 264067 5 4579 258769 1.74 263348 6 4424 265109 1.64 269533 7 4094 265534 1.52 269628 8 4180 269867 1.53 274047 9 3982 264193 1.48 268175 10 4158 264939 1.55 269097 11 4148 261785 1.56 265933 12 4220 266935 1.56 271155 13 4228 262306 1.59 266534 14 4242 263188 1.59 267430 15 4177 269552 1.53 273729 16 4209 266122 1.56 270331 17 4082 263042 1.53 267124 18 4280 269026 1.57 273306 19 4110 265608 1.52 269718 20 4094 263352 1.53 267446 21 4084 268894 1.50 272978 22 4057 263282 1.52 267339 23 4128 264454 1.54 268582 24 4230 269212 1.55 273442 25 3980 264011 1.49 267991 26 4192 261948 1.58 266140 27 4049 267219 1.49 271268 28 4070 263089 1.52 267159 29 4166 263485 1.56 267651 30 4053 261354 1.53 265407 31 3973 260408 1.50 264381 32 4096 257608 1.57 261704 33 4332 259746 1.64 264078 34 4167 252398 1.62 256565 35 3832 250244 1.51 254076 36 3755 251940 1.47 255695 37 3782 245140 1.52 248922 38 3873 242564 1.57 246437 39 3847 246696 1.54 250543 40 3712 241276 1.52 244988 41 3736 237322 1.55 241058 42 3694 237306 1.53 241000 43 3600 231854 1.53 235454 44 3716 227063 1.61 230779 45 3611 230358 1.54 233969 46 3509 223752 1.54 227261 47 3622 221098 1.61 224720 48 3477 219296 1.56 222773 49 3445 213967 1.58 217412 50 3340 210381 1.56 213721 51 3433 210133 1.61 213566 52 3158 204992 1.52 208150 53 3158 201983 1.54 205141 54 2989 200960 1.47 203949 55 3155 197539 1.57 200694 56 3134 193196 1.60 196330 57 2989 195078 1.51 198067 58 2852 187783 1.50 190635 59 3163 184234 1.69 187397 60 2769 185205 1.47 187974 61 2712 177646 1.50 180358 62 2890 173273 1.64 176163 63 2694 173444 1.53 176138 64 2581 166996 1.52 169577 65 2594 163746 1.56 166340 66 2462 162664 1.49 165126 67 2485 156187 1.57 158672 68 2351 152859 1.51 155210 69 2337 150863 1.53 153200 70 2190 146712 1.47 148902 71 2328 142410 1.61 144738 72 2118 140337 1.49 142455 73 2113 135720 1.53 137833 74 2060 132135 1.54 134195 75 2128 131557 1.59 133685 76 1945 125223 1.53 127168 77 1902 119129 1.57 121031 78 1770 110555 1.58 112325 79 1383 89035 1.53 90418 80 680 42362 1.58 43042 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 20307 780067 2.54 800374 2 17615 772261 2.23 789876 3 16303 785898 2.03 802201 4 15287 781562 1.92 796849 5 14979 763014 1.93 777993 6 14127 739978 1.87 754105 7 13723 741884 1.82 755607 8 13123 731039 1.76 744162 9 13547 738838 1.80 752385 10 13478 744198 1.78 757676 11 13461 720820 1.83 734281 12 13288 718683 1.82 731971 13 14048 723873 1.90 737921 14 13222 714936 1.82 728158 15 13274 720781 1.81 734055 16 13424 728833 1.81 742257 17 13313 718654 1.82 731967 18 13405 722952 1.82 736357 19 13641 730209 1.83 743850 20 13372 724786 1.81 738158 21 13466 727214 1.82 740680 22 13480 722205 1.83 735685 23 13360 723838 1.81 737198 24 13506 722047 1.84 735553 25 13179 725556 1.78 738735 26 13130 716848 1.80 729978 27 12520 717147 1.72 729667 28 12247 720294 1.67 732541 29 12354 709960 1.71 722314 30 12178 709517 1.69 721695 31 12275 724358 1.67 736633 32 11772 705125 1.64 716897 33 12200 699798 1.71 711998 34 12315 704140 1.72 716455 35 11193 696991 1.58 708184 36 10935 691207 1.56 702142 37 10961 691417 1.56 702378 38 10783 679971 1.56 690754 39 10610 677995 1.54 688605 40 10572 680116 1.53 690688 41 10458 669469 1.54 679927 42 10095 661774 1.50 671869 43 10185 660734 1.52 670919 44 9956 645625 1.52 655581 45 9823 638724 1.51 648547 46 9862 641026 1.52 650888 47 9743 629312 1.52 639055 48 9509 626742 1.49 636251 49 9547 626394 1.50 635941 50 9292 602796 1.52 612088 51 9486 594910 1.57 604396 52 8930 599477 1.47 608407 53 8418 575506 1.44 583924 54 8639 566095 1.50 574734 55 8443 566171 1.47 574614 56 8332 554129 1.48 562461 57 8272 550191 1.48 558463 58 8139 538547 1.49 546686 59 8702 533908 1.60 542610 60 7825 523139 1.47 530964 61 7758 512210 1.49 519968 62 7854 500600 1.54 508454 63 7552 495879 1.50 503431 64 7400 494392 1.47 501792 65 7135 476823 1.47 483958 66 6883 462464 1.47 469347 67 6782 458888 1.46 465670 68 6756 454998 1.46 461754 69 6514 444471 1.44 450985 70 6539 431914 1.49 438453 71 6611 420073 1.55 426684 72 6130 413839 1.46 419969 73 5827 399809 1.44 405636 74 5769 387380 1.47 393149 75 6027 375706 1.58 381733 76 5482 367657 1.47 373139 77 5376 349226 1.52 354602 78 4910 325257 1.49 330167 79 3999 265923 1.48 269922 80 1881 122212 1.52 124093 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 66796 27710 70.68 94506 2 55206 20544 72.88 75750 3 49535 18423 72.89 67958 4 46032 16759 73.31 62791 5 44702 15980 73.67 60682 6 43545 16034 73.09 59579 7 44552 16872 72.53 61424 8 41945 14958 73.71 56903 9 40536 14339 73.87 54875 10 41030 14481 73.91 55511 11 40687 14298 74.00 54985 12 39035 13611 74.15 52646 13 38508 13114 74.60 51622 14 37679 12949 74.42 50628 15 36934 12756 74.33 49690 16 36028 12485 74.26 48513 17 34836 12138 74.16 46974 18 33009 11479 74.20 44488 19 32626 11179 74.48 43805 20 31488 10837 74.40 42325 21 30795 10683 74.24 41478 22 30130 10054 74.98 40184 23 29320 9743 75.06 39063 24 28327 9685 74.52 38012 25 27988 9661 74.34 37649 26 26720 9319 74.14 36039 27 25790 9044 74.04 34834 28 25348 8585 74.70 33933 29 24559 8318 74.70 32877 30 23486 7912 74.80 31398 31 23481 8049 74.47 31530 32 22742 7557 75.06 30299 33 21618 7469 74.32 29087 34 21681 7432 74.47 29113 35 20622 7093 74.41 27715 36 19718 6858 74.19 26576 37 19366 6632 74.49 25998 38 18830 6580 74.10 25410 39 18291 6270 74.47 24561 40 18043 6331 74.03 24374 41 17141 5958 74.21 23099 42 16508 5488 75.05 21996 43 15799 5598 73.84 21397 44 15544 5359 74.36 20903 45 15288 5144 74.82 20432 46 14634 5307 73.39 19941 47 14531 5122 73.94 19653 48 13772 4918 73.69 18690 49 13239 4766 73.53 18005 50 12852 4543 73.88 17395 51 12155 4381 73.51 16536 52 11978 4186 74.10 16164 53 11966 4137 74.31 16103 54 11507 4121 73.63 15628 55 11067 3925 73.82 14992 56 10635 3917 73.08 14552 57 10631 3850 73.41 14481 58 10174 3700 73.33 13874 59 9697 3561 73.14 13258 60 9287 3305 73.75 12592 61 9165 3269 73.71 12434 62 9021 3244 73.55 12265 63 8527 3050 73.65 11577 64 8323 3120 72.73 11443 65 8012 3015 72.66 11027 66 7921 2792 73.94 10713 67 7761 2851 73.13 10612 68 7467 2636 73.91 10103 69 7108 2520 73.83 9628 70 6893 2570 72.84 9463 71 6951 2584 72.90 9535 72 6550 2451 72.77 9001 73 6173 2479 71.35 8652 74 6028 2427 71.30 8455 75 5774 2214 72.28 7988 76 5440 2077 72.37 7517 77 5357 2086 71.97 7443 78 4858 1934 71.53 6792 79 4092 1640 71.39 5732 80 2775 1211 69.62 3986 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 4294 167452 2.50 171746 2 2406 130084 1.82 132490 3 2195 120889 1.78 123084 4 1791 110449 1.60 112240 5 1854 105707 1.72 107561 6 1912 104163 1.80 106075 7 1563 101475 1.52 103038 8 1643 101292 1.60 102935 9 1325 96341 1.36 97666 10 1387 93862 1.46 95249 11 1403 89856 1.54 91259 12 1335 88963 1.48 90298 13 1318 85421 1.52 86739 14 1249 82812 1.49 84061 15 1344 83114 1.59 84458 16 1184 80495 1.45 81679 17 1209 76213 1.56 77422 18 1152 75625 1.50 76777 19 1021 72960 1.38 73981 20 1024 70562 1.43 71586 21 1054 69586 1.49 70640 22 1029 65935 1.54 66964 23 976 64963 1.48 65939 24 987 64228 1.51 65215 25 937 61020 1.51 61957 26 879 58761 1.47 59640 27 991 58287 1.67 59278 28 872 56176 1.53 57048 29 781 55895 1.38 56676 30 774 52962 1.44 53736 31 847 51977 1.60 52824 32 786 50212 1.54 50998 33 765 49738 1.51 50503 34 710 46737 1.50 47447 35 721 45306 1.57 46027 36 706 44177 1.57 44883 37 676 42264 1.57 42940 38 663 41240 1.58 41903 39 638 40555 1.55 41193 40 592 39399 1.48 39991 41 548 38097 1.42 38645 42 616 37370 1.62 37986 43 565 35376 1.57 35941 44 498 34572 1.42 35070 45 565 34090 1.63 34655 46 455 32976 1.36 33431 47 488 31988 1.50 32476 48 451 30376 1.46 30827 49 460 29513 1.53 29973 50 495 28295 1.72 28790 51 465 28393 1.61 28858 52 394 27252 1.43 27646 53 386 26374 1.44 26760 54 373 25775 1.43 26148 55 356 24869 1.41 25225 56 369 24188 1.50 24557 57 392 23860 1.62 24252 58 344 22738 1.49 23082 59 309 21892 1.39 22201 60 325 21777 1.47 22102 61 326 20490 1.57 20816 62 294 19923 1.45 20217 63 311 19918 1.54 20229 64 275 18755 1.45 19030 65 293 18247 1.58 18540 66 260 18079 1.42 18339 67 257 17206 1.47 17463 68 232 16856 1.36 17088 69 226 16325 1.37 16551 70 224 15706 1.41 15930 71 210 15218 1.36 15428 72 255 14818 1.69 15073 73 203 14237 1.41 14440 74 222 13990 1.56 14212 75 210 13688 1.51 13898 76 211 12864 1.61 13075 77 205 12277 1.64 12482 78 171 11264 1.50 11435 79 149 9839 1.49 9988 80 89 6711 1.31 6800 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 12683 536707 2.31 549390 2 8580 400105 2.10 408685 3 6903 371047 1.83 377950 4 5904 342445 1.69 348349 5 5485 325459 1.66 330944 6 5098 306790 1.63 311888 7 4529 299497 1.49 304026 8 4236 290873 1.44 295109 9 4129 286220 1.42 290349 10 4134 280307 1.45 284441 11 3939 263943 1.47 267882 12 3703 256871 1.42 260574 13 3602 251507 1.41 255109 14 3596 242181 1.46 245777 15 3532 238985 1.46 242517 16 3313 234889 1.39 238202 17 3393 226275 1.48 229668 18 3226 223185 1.42 226411 19 3230 218043 1.46 221273 20 3068 210277 1.44 213345 21 3017 204642 1.45 207659 22 2823 198109 1.40 200932 23 2919 192557 1.49 195476 24 2815 187869 1.48 190684 25 2696 183520 1.45 186216 26 2620 177434 1.46 180054 27 2640 172508 1.51 175148 28 2598 169626 1.51 172224 29 2467 163431 1.49 165898 30 2272 158091 1.42 160363 31 2585 158808 1.60 161393 32 2238 150254 1.47 152492 33 2268 145889 1.53 148157 34 2079 143083 1.43 145162 35 2116 139396 1.50 141512 36 2036 136162 1.47 138198 37 2034 132990 1.51 135024 38 1979 128605 1.52 130584 39 1895 125631 1.49 127526 40 1837 123466 1.47 125303 41 1794 119638 1.48 121432 42 1652 115120 1.41 116772 43 1626 113148 1.42 114774 44 1647 108478 1.50 110125 45 1568 105346 1.47 106914 46 1540 104650 1.45 106190 47 1541 101238 1.50 102779 48 1476 100358 1.45 101834 49 1483 98971 1.48 100454 50 1379 92556 1.47 93935 51 1381 90459 1.50 91840 52 1269 90705 1.38 91974 53 1272 84317 1.49 85589 54 1175 81729 1.42 82904 55 1175 79974 1.45 81149 56 1125 78161 1.42 79286 57 1243 77205 1.58 78448 58 1081 73676 1.45 74757 59 1132 73054 1.53 74186 60 1077 69901 1.52 70978 61 1106 67050 1.62 68156 62 971 65028 1.47 65999 63 983 64111 1.51 65094 64 971 64416 1.49 65387 65 897 60007 1.47 60904 66 852 58557 1.43 59409 67 863 57674 1.47 58537 68 812 57404 1.39 58216 69 838 55605 1.48 56443 70 774 52998 1.44 53772 71 773 51634 1.47 52407 72 751 50945 1.45 51696 73 725 48146 1.48 48871 74 668 45706 1.44 46374 75 638 44740 1.41 45378 76 661 43328 1.50 43989 77 601 41127 1.44 41728 78 613 39018 1.55 39631 79 528 34271 1.52 34799 80 359 22981 1.54 23340