CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 95685 36811 72.22 132496 2 104022 35645 74.48 139667 3 96289 35238 73.21 131527 4 95246 34779 73.25 130025 5 96162 34785 73.44 130947 6 96462 34554 73.63 131016 7 98365 36811 72.77 135176 8 97458 35382 73.36 132840 9 96908 34660 73.66 131568 10 100942 35524 73.97 136466 11 102307 35888 74.03 138195 12 102086 34985 74.48 137071 13 102626 35609 74.24 138235 14 101668 35473 74.13 137141 15 101735 34731 74.55 136466 16 103053 35075 74.61 138128 17 101509 35543 74.07 137052 18 101030 34737 74.41 135767 19 101789 34564 74.65 136353 20 100985 34954 74.29 135939 21 101711 34602 74.62 136313 22 101896 35146 74.35 137042 23 102141 34810 74.58 136951 24 101333 34231 74.75 135564 25 101856 34829 74.52 136685 26 101253 35145 74.23 136398 27 100048 34183 74.53 134231 28 100714 34391 74.54 135105 29 99193 33874 74.54 133067 30 98103 33382 74.61 131485 31 99315 33696 74.67 133011 32 98336 33489 74.60 131825 33 96972 32858 74.69 129830 34 97061 33212 74.51 130273 35 96010 32543 74.69 128553 36 94409 31922 74.73 126331 37 93335 31939 74.50 125274 38 92589 31478 74.63 124067 39 91310 30789 74.78 122099 40 91827 31038 74.74 122865 41 88990 30262 74.62 119252 42 87256 29701 74.61 116957 43 86374 29471 74.56 115845 44 85603 29227 74.55 114830 45 83782 28491 74.62 112273 46 83481 28613 74.47 112094 47 82515 28263 74.49 110778 48 80073 27101 74.71 107174 49 79713 27124 74.61 106837 50 77553 26822 74.30 104375 51 75332 25735 74.54 101067 52 74900 25173 74.85 100073 53 73725 25074 74.62 98799 54 72873 24699 74.69 97572 55 72183 24645 74.55 96828 56 70849 24525 74.29 95374 57 69469 23952 74.36 93421 58 67873 23548 74.24 91421 59 66566 23114 74.23 89680 60 65261 22360 74.48 87621 61 64533 22110 74.48 86643 62 62764 21627 74.37 84391 63 60104 20744 74.34 80848 64 59553 20554 74.34 80107 65 58312 20119 74.35 78431 66 56342 19514 74.27 75856 67 55531 19387 74.12 74918 68 54162 18850 74.18 73012 69 52277 18406 73.96 70683 70 51887 17855 74.40 69742 71 50239 17602 74.05 67841 72 48616 17259 73.80 65875 73 47677 16660 74.11 64337 74 45873 16365 73.71 62238 75 43932 15332 74.13 59264 76 43070 14758 74.48 57828 77 41102 14388 74.07 55490 78 37338 13336 73.68 50674 79 30780 10799 74.03 41579 80 14293 5219 73.25 19512 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 7699 220198 3.38 227897 2 4165 223828 1.83 227993 3 3940 231791 1.67 235731 4 3150 229671 1.35 232821 5 3482 227406 1.51 230888 6 3519 230163 1.51 233682 7 2899 231868 1.23 234767 8 3109 234375 1.31 237484 9 2802 231995 1.19 234797 10 2837 230664 1.21 233501 11 2985 228501 1.29 231486 12 2950 233152 1.25 236102 13 3003 229054 1.29 232057 14 2907 230379 1.25 233286 15 2832 234502 1.19 237334 16 2896 232348 1.23 235244 17 2871 229189 1.24 232060 18 2895 234493 1.22 237388 19 2912 230881 1.25 233793 20 3004 231082 1.28 234086 21 2930 234489 1.23 237419 22 3003 230133 1.29 233136 23 3008 231627 1.28 234635 24 3151 234001 1.33 237152 25 2881 229731 1.24 232612 26 2996 227831 1.30 230827 27 2886 232443 1.23 235329 28 2840 228124 1.23 230964 29 2886 226996 1.26 229882 30 2803 225546 1.23 228349 31 2791 224756 1.23 227547 32 2803 222193 1.25 224996 33 3023 221958 1.34 224981 34 2948 216033 1.35 218981 35 2709 214635 1.25 217344 36 2629 214083 1.21 216712 37 2568 208669 1.22 211237 38 2623 205944 1.26 208567 39 2677 208957 1.26 211634 40 2512 202642 1.22 205154 41 2565 200352 1.26 202917 42 2448 199319 1.21 201767 43 2401 194124 1.22 196525 44 2391 191079 1.24 193470 45 2407 191901 1.24 194308 46 2289 186293 1.21 188582 47 2372 183342 1.28 185714 48 2237 182325 1.21 184562 49 2218 177462 1.23 179680 50 2200 173161 1.25 175361 51 2264 174535 1.28 176799 52 2107 169231 1.23 171338 53 2025 165916 1.21 167941 54 1959 165346 1.17 167305 55 1951 161484 1.19 163435 56 2011 157850 1.26 159861 57 1941 158088 1.21 160029 58 1949 151824 1.27 153773 59 2133 148855 1.41 150988 60 1859 148597 1.24 150456 61 1717 144315 1.18 146032 62 1890 139642 1.34 141532 63 1738 139832 1.23 141570 64 1684 133520 1.25 135204 65 1606 130976 1.21 132582 66 1632 129579 1.24 131211 67 1555 124939 1.23 126494 68 1550 122100 1.25 123650 69 1440 119488 1.19 120928 70 1378 115442 1.18 116820 71 1509 114018 1.31 115527 72 1336 111416 1.18 112752 73 1257 107031 1.16 108288 74 1280 104624 1.21 105904 75 1362 102924 1.31 104286 76 1275 98203 1.28 99478 77 1175 92816 1.25 93991 78 1040 86795 1.18 87835 79 841 69018 1.20 69859 80 437 33387 1.29 33824 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 16424 640000 2.50 656424 2 14867 636768 2.28 651635 3 13031 646966 1.97 659997 4 12046 645693 1.83 657739 5 12258 635268 1.89 647526 6 11833 616404 1.88 628237 7 11126 615924 1.77 627050 8 10781 609570 1.74 620351 9 11021 612234 1.77 623255 10 11112 619928 1.76 631040 11 10931 602494 1.78 613425 12 10831 603033 1.76 613864 13 11590 607846 1.87 619436 14 10783 602246 1.76 613029 15 11101 609088 1.79 620189 16 11149 615013 1.78 626162 17 11122 608078 1.80 619200 18 10953 615113 1.75 626066 19 11017 619076 1.75 630093 20 10948 611548 1.76 622496 21 11109 614255 1.78 625364 22 11033 613007 1.77 624040 23 10800 611140 1.74 621940 24 10851 610440 1.75 621291 25 10365 613400 1.66 623765 26 10037 606714 1.63 616751 27 9732 605442 1.58 615174 28 9626 607266 1.56 616892 29 9405 597459 1.55 606864 30 9164 594764 1.52 603928 31 9459 605075 1.54 614534 32 8614 588099 1.44 596713 33 9081 582733 1.53 591814 34 8984 583264 1.52 592248 35 7910 577710 1.35 585620 36 7819 571794 1.35 579613 37 7755 569501 1.34 577256 38 7544 560526 1.33 568070 39 7421 555460 1.32 562881 40 7258 555919 1.29 563177 41 7233 546479 1.31 553712 42 6901 539075 1.26 545976 43 6888 534900 1.27 541788 44 6835 521434 1.29 528269 45 6716 515071 1.29 521787 46 6481 513512 1.25 519993 47 6631 503720 1.30 510351 48 6306 501854 1.24 508160 49 6260 498169 1.24 504429 50 5903 480397 1.21 486300 51 6272 471594 1.31 477866 52 5910 473074 1.23 478984 53 5674 455646 1.23 461320 54 5681 447555 1.25 453236 55 5434 443089 1.21 448523 56 5271 435044 1.20 440315 57 5312 431499 1.22 436811 58 5116 422791 1.20 427907 59 5741 416281 1.36 422022 60 4979 408469 1.20 413448 61 4894 398442 1.21 403336 62 5019 388510 1.28 393529 63 4491 381984 1.16 386475 64 4536 379149 1.18 383685 65 4580 366429 1.23 371009 66 4185 356880 1.16 361065 67 4206 351413 1.18 355619 68 4067 346535 1.16 350602 69 4077 338053 1.19 342130 70 3927 329457 1.18 333384 71 4103 319031 1.27 323134 72 3729 312990 1.18 316719 73 3588 302564 1.17 306152 74 3477 292880 1.17 296357 75 3742 283375 1.30 287117 76 3470 275433 1.24 278903 77 3100 261688 1.17 264788 78 2917 242826 1.19 245743 79 2354 198027 1.17 200381 80 1097 91738 1.18 92835 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 56062 24005 70.02 80067 2 46158 17077 72.99 63235 3 40047 15031 72.71 55078 4 35042 13556 72.11 48598 5 34702 12995 72.76 47697 6 33408 12815 72.28 46223 7 33791 13240 71.85 47031 8 31955 12097 72.54 44052 9 31006 11602 72.77 42608 10 31182 11449 73.14 42631 11 30841 11651 72.58 42492 12 29624 10916 73.07 40540 13 29271 10432 73.72 39703 14 28394 10403 73.19 38797 15 27789 10097 73.35 37886 16 27071 9701 73.62 36772 17 25729 9254 73.55 34983 18 24812 9106 73.15 33918 19 24308 8681 73.69 32989 20 23462 8456 73.51 31918 21 22910 8324 73.35 31234 22 22260 8014 73.53 30274 23 21819 7617 74.12 29436 24 20715 7394 73.70 28109 25 20594 7252 73.96 27846 26 19654 7274 72.99 26928 27 19078 6758 73.84 25836 28 18742 6610 73.93 25352 29 17767 6357 73.65 24124 30 17330 6204 73.64 23534 31 16810 6077 73.45 22887 32 16533 5932 73.59 22465 33 15933 5566 74.11 21499 34 15890 5578 74.02 21468 35 15223 5378 73.89 20601 36 14651 5103 74.17 19754 37 14173 5019 73.85 19192 38 13756 4890 73.77 18646 39 13343 4789 73.59 18132 40 13166 4718 73.62 17884 41 12543 4482 73.67 17025 42 11888 4267 73.59 16155 43 11820 4217 73.70 16037 44 11262 4090 73.36 15352 45 10964 3940 73.56 14904 46 10712 3931 73.15 14643 47 10388 3869 72.86 14257 48 10027 3558 73.81 13585 49 9753 3493 73.63 13246 50 9204 3493 72.49 12697 51 8867 3266 73.08 12133 52 8817 3109 73.93 11926 53 8452 3071 73.35 11523 54 8107 3081 72.46 11188 55 8011 3064 72.33 11075 56 7648 2909 72.44 10557 57 7709 2852 72.99 10561 58 7163 2678 72.79 9841 59 7082 2655 72.73 9737 60 6628 2530 72.37 9158 61 6678 2475 72.96 9153 62 6482 2403 72.95 8885 63 6114 2294 72.72 8408 64 6055 2194 73.40 8249 65 5902 2186 72.97 8088 66 5640 2082 73.04 7722 67 5520 2055 72.87 7575 68 5251 1999 72.43 7250 69 4983 1934 72.04 6917 70 5001 1905 72.42 6906 71 4941 1866 72.59 6807 72 4677 1797 72.24 6474 73 4637 1811 71.91 6448 74 4347 1737 71.45 6084 75 4208 1626 72.13 5834 76 4021 1491 72.95 5512 77 3865 1536 71.56 5401 78 3495 1383 71.65 4878 79 2975 1237 70.63 4212 80 1943 813 70.50 2756 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 4524 139280 3.15 143804 2 2067 103395 1.96 105462 3 2249 96194 2.28 98443 4 1241 88997 1.38 90238 5 1411 82084 1.69 83495 6 1628 80554 1.98 82182 7 1073 79906 1.33 80979 8 1177 79777 1.45 80954 9 893 74313 1.19 75206 10 935 72195 1.28 73130 11 865 70150 1.22 71015 12 839 69694 1.19 70533 13 814 67010 1.20 67824 14 792 64681 1.21 65473 15 780 64125 1.20 64905 16 702 61373 1.13 62075 17 712 59142 1.19 59854 18 709 57550 1.22 58259 19 713 55576 1.27 56289 20 674 53192 1.25 53866 21 620 52457 1.17 53077 22 550 49941 1.09 50491 23 659 49226 1.32 49885 24 551 49008 1.11 49559 25 542 46092 1.16 46634 26 561 44489 1.25 45050 27 555 44154 1.24 44709 28 494 42436 1.15 42930 29 520 41307 1.24 41827 30 456 39572 1.14 40028 31 521 38562 1.33 39083 32 489 37302 1.29 37791 33 442 37263 1.17 37705 34 414 34976 1.17 35390 35 458 33944 1.33 34402 36 397 32910 1.19 33307 37 368 31782 1.14 32150 38 389 30805 1.25 31194 39 328 30518 1.06 30846 40 365 29366 1.23 29731 41 347 28628 1.20 28975 42 308 27419 1.11 27727 43 320 26445 1.20 26765 44 296 25512 1.15 25808 45 272 25368 1.06 25640 46 271 24489 1.09 24760 47 288 23773 1.20 24061 48 273 22668 1.19 22941 49 250 22100 1.12 22350 50 282 21325 1.31 21607 51 217 20946 1.03 21163 52 240 19833 1.20 20073 53 218 19323 1.12 19541 54 228 19295 1.17 19523 55 213 18704 1.13 18917 56 215 17905 1.19 18120 57 201 17625 1.13 17826 58 200 17134 1.15 17334 59 196 16205 1.20 16401 60 185 16143 1.13 16328 61 190 15144 1.24 15334 62 178 14672 1.20 14850 63 179 14600 1.21 14779 64 155 13901 1.10 14056 65 155 13529 1.13 13684 66 154 13350 1.14 13504 67 160 12653 1.25 12813 68 150 12369 1.20 12519 69 140 11881 1.16 12021 70 130 11532 1.11 11662 71 146 11202 1.29 11348 72 121 10950 1.09 11071 73 123 10546 1.15 10669 74 121 10198 1.17 10319 75 110 9960 1.09 10070 76 96 9560 0.99 9656 77 119 8953 1.31 9072 78 91 8483 1.06 8574 79 106 7207 1.45 7313 80 66 4889 1.33 4955 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 9946 421670 2.30 431616 2 6397 302098 2.07 308495 3 4642 273320 1.67 277962 4 3652 251675 1.43 255327 5 3694 240160 1.51 243854 6 3750 225306 1.64 229056 7 2743 219233 1.24 221976 8 2592 212970 1.20 215562 9 2509 210532 1.18 213041 10 2499 205609 1.20 208108 11 2296 195252 1.16 197548 12 2349 189237 1.23 191586 13 2087 186821 1.10 188908 14 2208 179717 1.21 181925 15 2087 177259 1.16 179346 16 2092 174107 1.19 176199 17 2065 166999 1.22 169064 18 1945 163470 1.18 165415 19 1746 158114 1.09 159860 20 1739 153058 1.12 154797 21 1772 149283 1.17 151055 22 1726 144161 1.18 145887 23 1621 140079 1.14 141700 24 1607 136720 1.16 138327 25 1606 133518 1.19 135124 26 1482 128828 1.14 130310 27 1607 125115 1.27 126722 28 1370 122329 1.11 123699 29 1450 118197 1.21 119647 30 1369 115005 1.18 116374 31 1470 114401 1.27 115871 32 1291 108150 1.18 109441 33 1349 105092 1.27 106441 34 1235 103099 1.18 104334 35 1164 100576 1.14 101740 36 1202 98079 1.21 99281 37 1091 95444 1.13 96535 38 1105 91916 1.19 93021 39 1055 89670 1.16 90725 40 1007 88151 1.13 89158 41 1002 85535 1.16 86537 42 942 82247 1.13 83189 43 921 80321 1.13 81242 44 982 77241 1.26 78223 45 840 74976 1.11 75816 46 906 74069 1.21 74975 47 847 71625 1.17 72472 48 847 71226 1.18 72073 49 832 69629 1.18 70461 50 786 65493 1.19 66279 51 772 63509 1.20 64281 52 752 63533 1.17 64285 53 748 59089 1.25 59837 54 666 57754 1.14 58420 55 674 57343 1.16 58017 56 630 55208 1.13 55838 57 698 54749 1.26 55447 58 615 51680 1.18 52295 59 611 51487 1.17 52098 60 603 49531 1.20 50134 61 595 47133 1.25 47728 62 543 46038 1.17 46581 63 535 45380 1.17 45915 64 532 44893 1.17 45425 65 511 42392 1.19 42903 66 467 41032 1.13 41499 67 505 40294 1.24 40799 68 486 40264 1.19 40750 69 478 39105 1.21 39583 70 434 37537 1.14 37971 71 472 36134 1.29 36606 72 425 35855 1.17 36280 73 391 34094 1.13 34485 74 383 32409 1.17 32792 75 377 31689 1.18 32066 76 335 30284 1.09 30619 77 344 28933 1.17 29277 78 302 27062 1.10 27364 79 249 24016 1.03 24265 80 187 16181 1.14 16368