CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 142764 32689 81.37 175453 2 155062 31465 83.13 186527 3 144918 30797 82.47 175715 4 144510 30428 82.61 174938 5 145827 29609 83.12 175436 6 145014 29725 82.99 174739 7 149456 32231 82.26 181687 8 148096 30037 83.14 178133 9 146604 29357 83.32 175961 10 152601 30449 83.37 183050 11 154606 30450 83.55 185056 12 152563 29735 83.69 182298 13 155731 30247 83.74 185978 14 154117 30232 83.60 184349 15 153859 29867 83.74 183726 16 155556 30286 83.70 185842 17 154603 29599 83.93 184202 18 152690 29804 83.67 182494 19 153473 29751 83.76 183224 20 153721 29640 83.84 183361 21 154019 29669 83.85 183688 22 154777 30055 83.74 184832 23 154981 29420 84.05 184401 24 153465 29298 83.97 182763 25 156241 29556 84.09 185797 26 154306 29645 83.88 183951 27 152448 28662 84.17 181110 28 153458 29544 83.86 183002 29 151629 28950 83.97 180579 30 149823 28692 83.93 178515 31 151341 29581 83.65 180922 32 151268 28626 84.09 179894 33 148893 28090 84.13 176983 34 150637 28846 83.93 179483 35 148296 28160 84.04 176456 36 145731 27326 84.21 173057 37 145874 27704 84.04 173578 38 144872 27707 83.95 172579 39 143500 27262 84.04 170762 40 143034 27492 83.88 170526 41 139721 26595 84.01 166316 42 137616 25825 84.20 163441 43 136908 26040 84.02 162948 44 136431 25893 84.05 162324 45 133115 25263 84.05 158378 46 134021 25280 84.13 159301 47 132349 25635 83.77 157984 48 129356 24167 84.26 153523 49 128828 24831 83.84 153659 50 127233 24739 83.72 151972 51 122037 23214 84.02 145251 52 122582 23224 84.07 145806 53 120882 22987 84.02 143869 54 119361 22734 84.00 142095 55 119694 23003 83.88 142697 56 117847 22524 83.95 140371 57 116248 21940 84.12 138188 58 114269 21934 83.90 136203 59 111837 21419 83.93 133256 60 108556 20757 83.95 129313 61 108209 20833 83.86 129042 62 105329 20182 83.92 125511 63 102404 19592 83.94 121996 64 102080 19321 84.08 121401 65 99809 18985 84.02 118794 66 97406 18530 84.02 115936 67 95678 18214 84.01 113892 68 94321 18269 83.77 112590 69 91962 17617 83.92 109579 70 90699 17600 83.75 108299 71 88344 17245 83.67 105589 72 85894 16808 83.63 102702 73 84117 16550 83.56 100667 74 82277 15948 83.76 98225 75 79123 15085 83.99 94208 76 77790 14942 83.89 92732 77 74046 14479 83.64 88525 78 67700 13616 83.26 81316 79 54987 10852 83.52 65839 80 26538 5321 83.30 31859 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 10191 265573 3.70 275764 2 5232 269714 1.90 274946 3 4979 280958 1.74 285937 4 3876 279102 1.37 282978 5 4479 275198 1.60 279677 6 4444 280712 1.56 285156 7 3806 281868 1.33 285674 8 3785 285159 1.31 288944 9 3544 281967 1.24 285511 10 3627 280158 1.28 283785 11 3637 278688 1.29 282325 12 3577 283592 1.25 287169 13 3838 278103 1.36 281941 14 3589 279086 1.27 282675 15 3707 286225 1.28 289932 16 3641 282613 1.27 286254 17 3759 278197 1.33 281956 18 3782 286280 1.30 290062 19 3767 280676 1.32 284443 20 3704 279959 1.31 283663 21 3657 285734 1.26 289391 22 3615 279398 1.28 283013 23 3804 280217 1.34 284021 24 4002 284488 1.39 288490 25 3682 279677 1.30 283359 26 3864 276403 1.38 280267 27 3547 282710 1.24 286257 28 3619 277948 1.29 281567 29 3768 276831 1.34 280599 30 3687 276967 1.31 280654 31 3548 276410 1.27 279958 32 3580 272061 1.30 275641 33 3856 274960 1.38 278816 34 3775 267191 1.39 270966 35 3526 265665 1.31 269191 36 3446 266574 1.28 270020 37 3351 259299 1.28 262650 38 3436 257204 1.32 260640 39 3406 261827 1.28 265233 40 3253 254443 1.26 257696 41 3424 251213 1.34 254637 42 3317 253306 1.29 256623 43 3100 246907 1.24 250007 44 3225 241447 1.32 244672 45 3071 245000 1.24 248071 46 3017 238436 1.25 241453 47 3264 233863 1.38 237127 48 3011 234381 1.27 237392 49 2976 229450 1.28 232426 50 3064 224052 1.35 227116 51 3084 226583 1.34 229667 52 2948 219578 1.32 222526 53 2875 216064 1.31 218939 54 2828 215591 1.29 218419 55 2730 212115 1.27 214845 56 2725 208561 1.29 211286 57 2700 210531 1.27 213231 58 2639 203218 1.28 205857 59 2928 199947 1.44 202875 60 2553 200086 1.26 202639 61 2560 192342 1.31 194902 62 2749 187944 1.44 190693 63 2541 188109 1.33 190650 64 2276 181590 1.24 183866 65 2361 178549 1.31 180910 66 2160 176227 1.21 178387 67 2112 171665 1.22 173777 68 2169 168273 1.27 170442 69 2054 165811 1.22 167865 70 1969 161161 1.21 163130 71 2153 157964 1.34 160117 72 1953 156361 1.23 158314 73 1919 151961 1.25 153880 74 1895 147487 1.27 149382 75 1964 146450 1.32 148414 76 1806 139500 1.28 141306 77 1683 133290 1.25 134973 78 1595 124503 1.26 126098 79 1240 99989 1.22 101229 80 663 48528 1.35 49191 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 18254 757523 2.35 775777 2 16307 748842 2.13 765149 3 14026 760309 1.81 774335 4 12906 760619 1.67 773525 5 13097 745694 1.73 758791 6 12480 725044 1.69 737524 7 11706 729162 1.58 740868 8 11402 718146 1.56 729548 9 11518 722415 1.57 733933 10 11623 731969 1.56 743592 11 11374 713157 1.57 724531 12 11360 710064 1.57 721424 13 12193 719310 1.67 731503 14 11268 710361 1.56 721629 15 11493 718325 1.57 729818 16 11268 727052 1.53 738320 17 11501 716237 1.58 727738 18 11329 724030 1.54 735359 19 11791 731511 1.59 743302 20 11412 719848 1.56 731260 21 11551 721314 1.58 732865 22 11484 724406 1.56 735890 23 11447 721752 1.56 733199 24 11818 721443 1.61 733261 25 11187 725871 1.52 737058 26 10957 716127 1.51 727084 27 10651 715356 1.47 726007 28 10338 722566 1.41 732904 29 10199 706792 1.42 716991 30 9964 705036 1.39 715000 31 10302 718225 1.41 728527 32 9720 701433 1.37 711153 33 10025 693032 1.43 703057 34 10172 698559 1.44 708731 35 9330 689570 1.33 698900 36 9026 688352 1.29 697378 37 9074 687372 1.30 696446 38 8930 675872 1.30 684802 39 8668 672626 1.27 681294 40 8574 674461 1.26 683035 41 8492 663715 1.26 672207 42 8145 655826 1.23 663971 43 8205 656402 1.23 664607 44 8210 640941 1.26 649151 45 8058 635503 1.25 643561 46 7793 637296 1.21 645089 47 8086 624765 1.28 632851 48 7753 622768 1.23 630521 49 7715 622827 1.22 630542 50 7423 601582 1.22 609005 51 7830 591384 1.31 599214 52 7273 598073 1.20 605346 53 7267 575525 1.25 582792 54 6956 567475 1.21 574431 55 6669 565094 1.17 571763 56 6809 552300 1.22 559109 57 6657 550622 1.19 557279 58 6554 541765 1.20 548319 59 7181 533243 1.33 540424 60 6509 526615 1.22 533124 61 6416 516827 1.23 523243 62 6605 504696 1.29 511301 63 6118 499034 1.21 505152 64 6025 498930 1.19 504955 65 5907 482430 1.21 488337 66 5677 471285 1.19 476962 67 5505 466031 1.17 471536 68 5513 459136 1.19 464649 69 5317 450833 1.17 456150 70 5178 441463 1.16 446641 71 5358 429942 1.23 435300 72 4950 423456 1.16 428406 73 4935 412327 1.18 417262 74 4717 399631 1.17 404348 75 5089 389088 1.29 394177 76 4651 380140 1.21 384791 77 4294 361353 1.17 365647 78 3997 336899 1.17 340896 79 3429 277341 1.22 280770 80 1613 129086 1.23 130699 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 89820 22420 80.02 112240 2 79065 16940 82.36 96005 3 70772 15290 82.23 86062 4 63718 14133 81.85 77851 5 62791 13427 82.38 76218 6 60939 13376 82.00 74315 7 61071 13947 81.41 75018 8 59436 12661 82.44 72097 9 57739 11907 82.90 69646 10 58610 12219 82.75 70829 11 58298 12140 82.76 70438 12 55907 11330 83.15 67237 13 55431 11192 83.20 66623 14 53792 10821 83.25 64613 15 52847 10538 83.37 63385 16 52184 10400 83.38 62584 17 49973 10245 82.99 60218 18 47837 9686 83.16 57523 19 46667 9388 83.25 56055 20 45535 8873 83.69 54408 21 45109 8801 83.67 53910 22 43682 8522 83.68 52204 23 42528 8411 83.49 50939 24 41418 8156 83.55 49574 25 41076 8288 83.21 49364 26 39971 7800 83.67 47771 27 37855 7462 83.53 45317 28 37492 7318 83.67 44810 29 36279 7158 83.52 43437 30 35253 6800 83.83 42053 31 34692 6779 83.65 41471 32 34385 6598 83.90 40983 33 32996 6378 83.80 39374 34 32568 6250 83.90 38818 35 31257 6226 83.39 37483 36 30099 5719 84.03 35818 37 29828 5851 83.60 35679 38 29164 5637 83.80 34801 39 28188 5723 83.12 33911 40 27668 5421 83.62 33089 41 26073 5287 83.14 31360 42 25630 4933 83.86 30563 43 25184 4838 83.89 30022 44 24396 4751 83.70 29147 45 23973 4523 84.13 28496 46 23244 4717 83.13 27961 47 22548 4577 83.13 27125 48 21926 4308 83.58 26234 49 21237 4236 83.37 25473 50 20532 4076 83.44 24608 51 19851 3815 83.88 23666 52 19341 3914 83.17 23255 53 19021 3763 83.48 22784 54 18518 3565 83.86 22083 55 18324 3636 83.44 21960 56 17795 3510 83.52 21305 57 17433 3579 82.97 21012 58 16488 3358 83.08 19846 59 16075 3158 83.58 19233 60 15458 3073 83.42 18531 61 15144 3095 83.03 18239 62 14712 2906 83.51 17618 63 14368 2738 83.99 17106 64 13984 2728 83.68 16712 65 13592 2641 83.73 16233 66 13125 2658 83.16 15783 67 12933 2513 83.73 15446 68 12373 2513 83.12 14886 69 11910 2502 82.64 14412 70 11755 2387 83.12 14142 71 11605 2344 83.20 13949 72 11171 2232 83.35 13403 73 10664 2293 82.30 12957 74 10458 2134 83.05 12592 75 9889 2024 83.01 11913 76 9580 1996 82.76 11576 77 8991 1775 83.51 10766 78 8470 1823 82.29 10293 79 7216 1531 82.50 8747 80 4632 1064 81.32 5696 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 6509 178517 3.52 185026 2 3043 141328 2.11 144371 3 3125 136502 2.24 139627 4 1836 128858 1.40 130694 5 2090 120097 1.71 122187 6 2377 118438 1.97 120815 7 1648 117754 1.38 119402 8 1863 117806 1.56 119669 9 1471 110869 1.31 112340 10 1395 107966 1.28 109361 11 1384 104834 1.30 106218 12 1341 104096 1.27 105437 13 1204 100466 1.18 101670 14 1215 97203 1.23 98418 15 1246 97075 1.27 98321 16 1095 94997 1.14 96092 17 1168 89719 1.29 90887 18 1099 89878 1.21 90977 19 1081 85812 1.24 86893 20 1090 82941 1.30 84031 21 1036 82413 1.24 83449 22 1033 79073 1.29 80106 23 1012 77697 1.29 78709 24 967 76289 1.25 77256 25 898 72546 1.22 73444 26 953 70265 1.34 71218 27 932 71265 1.29 72197 28 856 68106 1.24 68962 29 801 66555 1.19 67356 30 831 63944 1.28 64775 31 863 63336 1.34 64199 32 749 60905 1.21 61654 33 759 59894 1.25 60653 34 716 56880 1.24 57596 35 684 55486 1.22 56170 36 651 54681 1.18 55332 37 647 52341 1.22 52988 38 605 51182 1.17 51787 39 607 50979 1.18 51586 40 616 49210 1.24 49826 41 585 48019 1.20 48604 42 562 46930 1.18 47492 43 545 44454 1.21 44999 44 568 43317 1.29 43885 45 578 43002 1.33 43580 46 512 41551 1.22 42063 47 491 40869 1.19 41360 48 461 39246 1.16 39707 49 464 37873 1.21 38337 50 504 36549 1.36 37053 51 499 36655 1.34 37154 52 451 34839 1.28 35290 53 444 34221 1.28 34665 54 428 33724 1.25 34152 55 384 32197 1.18 32581 56 414 31834 1.28 32248 57 443 31407 1.39 31850 58 339 29652 1.13 29991 59 376 28700 1.29 29076 60 354 28894 1.21 29248 61 363 27270 1.31 27633 62 374 26819 1.38 27193 63 345 26276 1.30 26621 64 328 25087 1.29 25415 65 341 24488 1.37 24829 66 293 24123 1.20 24416 67 311 23293 1.32 23604 68 292 22708 1.27 23000 69 290 21896 1.31 22186 70 258 21452 1.19 21710 71 286 20989 1.34 21275 72 252 20198 1.23 20450 73 243 19841 1.21 20084 74 265 18732 1.39 18997 75 224 18924 1.17 19148 76 214 18001 1.17 18215 77 204 16791 1.20 16995 78 203 15711 1.28 15914 79 172 13657 1.24 13829 80 104 8891 1.16 8995 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 11957 528091 2.21 540048 2 8552 402133 2.08 410685 3 6100 375393 1.60 381493 4 5048 351517 1.42 356565 5 5130 338112 1.49 343242 6 5463 318161 1.69 323624 7 3928 312871 1.24 316799 8 3826 303366 1.25 307192 9 3661 300368 1.20 304029 10 3470 296048 1.16 299518 11 3381 281499 1.19 284880 12 3229 274403 1.16 277632 13 3214 270875 1.17 274089 14 2988 262153 1.13 265141 15 3024 260202 1.15 263226 16 2800 255516 1.08 258316 17 2893 245612 1.16 248505 18 2797 241589 1.14 244386 19 2743 236958 1.14 239701 20 2618 228661 1.13 231279 21 2592 223888 1.14 226480 22 2436 216652 1.11 219088 23 2446 212605 1.14 215051 24 2405 206111 1.15 208516 25 2328 202810 1.13 205138 26 2280 196239 1.15 198519 27 2364 192270 1.21 194634 28 2241 188737 1.17 190978 29 2129 182172 1.16 184301 30 2078 178422 1.15 180500 31 2295 177574 1.28 179869 32 2032 169298 1.19 171330 33 2035 164772 1.22 166807 34 1836 162590 1.12 164426 35 1882 158564 1.17 160446 36 1814 155145 1.16 156959 37 1802 151576 1.17 153378 38 1681 146793 1.13 148474 39 1652 143511 1.14 145163 40 1637 140860 1.15 142497 41 1603 137221 1.15 138824 42 1533 133568 1.13 135101 43 1462 130811 1.11 132273 44 1506 126293 1.18 127799 45 1364 122820 1.10 124184 46 1393 122063 1.13 123456 47 1303 118337 1.09 119640 48 1379 116904 1.17 118283 49 1336 115286 1.15 116622 50 1317 108374 1.20 109691 51 1251 106299 1.16 107550 52 1226 105865 1.14 107091 53 1191 99833 1.18 101024 54 1185 97409 1.20 98594 55 1083 95932 1.12 97015 56 1117 92808 1.19 93925 57 1134 92365 1.21 93499 58 1038 88944 1.15 89982 59 1073 87493 1.21 88566 60 937 84472 1.10 85409 61 1017 81367 1.23 82384 62 900 79440 1.12 80340 63 837 77947 1.06 78784 64 909 77736 1.16 78645 65 898 73867 1.20 74765 66 816 71804 1.12 72620 67 809 70782 1.13 71591 68 853 69950 1.20 70803 69 774 68068 1.12 68842 70 723 65639 1.09 66362 71 784 63448 1.22 64232 72 748 62683 1.18 63431 73 714 59900 1.18 60614 74 646 57732 1.11 58378 75 689 56854 1.20 57543 76 638 54815 1.15 55453 77 618 52479 1.16 53097 78 597 48372 1.22 48969 79 479 42909 1.10 43388 80 355 28158 1.25 28513