CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 118499 36368 76.52 154867 2 128118 34735 78.67 162853 3 119401 34471 77.60 153872 4 119802 34284 77.75 154086 5 121548 33612 78.34 155160 6 120528 33881 78.06 154409 7 123518 35697 77.58 159215 8 121803 34680 77.84 156483 9 122245 33403 78.54 155648 10 126271 34577 78.50 160848 11 128675 35028 78.60 163703 12 127100 33979 78.91 161079 13 128953 34082 79.10 163035 14 127688 34344 78.80 162032 15 127940 33768 79.12 161708 16 128998 34323 78.98 163321 17 127489 34197 78.85 161686 18 126885 33715 79.01 160600 19 127883 33986 79.00 161869 20 127258 33931 78.95 161189 21 127330 33552 79.14 160882 22 127709 33937 79.01 161646 23 128190 34111 78.98 162301 24 127372 33859 79.00 161231 25 129010 34391 78.95 163401 26 127615 34056 78.93 161671 27 125196 32932 79.17 158128 28 125785 33500 78.97 159285 29 124990 33331 78.95 158321 30 123140 32496 79.12 155636 31 124692 33063 79.04 157755 32 122630 32477 79.06 155107 33 121102 31782 79.21 152884 34 122006 32257 79.09 154263 35 120044 31499 79.21 151543 36 117110 30709 79.23 147819 37 117312 30858 79.17 148170 38 116755 30629 79.22 147384 39 114150 29961 79.21 144111 40 113404 30164 78.99 143568 41 110839 29609 78.92 140448 42 108206 28558 79.12 136764 43 107763 28242 79.23 136005 44 107463 28343 79.13 135806 45 104281 27406 79.19 131687 46 104048 27321 79.20 131369 47 101873 27271 78.88 129144 48 99056 26239 79.06 125295 49 97976 26125 78.95 124101 50 96235 25730 78.90 121965 51 93092 24624 79.08 117716 52 91873 24522 78.93 116395 53 90583 24216 78.91 114799 54 89541 23858 78.96 113399 55 88459 23364 79.11 111823 56 86086 23216 78.76 109302 57 84763 22647 78.92 107410 58 83269 22272 78.90 105541 59 80654 21816 78.71 102470 60 79138 21364 78.74 100502 61 77704 20658 79.00 98362 62 75070 20331 78.69 95401 63 73118 19417 79.02 92535 64 71750 19098 78.98 90848 65 69552 18897 78.64 88449 66 67786 17982 79.03 85768 67 66494 17859 78.83 84353 68 64776 17295 78.93 82071 69 62694 17077 78.59 79771 70 61665 16742 78.65 78407 71 59712 16499 78.35 76211 72 57367 15676 78.54 73043 73 55972 15479 78.34 71451 74 54421 15020 78.37 69441 75 51725 14221 78.44 65946 76 50791 13541 78.95 64332 77 47782 13000 78.61 60782 78 43607 12079 78.31 55686 79 35023 9438 78.77 44461 80 16585 4704 77.90 21289 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 8544 252051 3.28 260595 2 4839 256083 1.85 260922 3 4384 266497 1.62 270881 4 3592 262854 1.35 266446 5 4018 259205 1.53 263223 6 3876 264679 1.44 268555 7 3495 266439 1.29 269934 8 3480 268847 1.28 272327 9 3316 267384 1.22 270700 10 3418 265243 1.27 268661 11 3465 263154 1.30 266619 12 3508 268516 1.29 272024 13 3573 262738 1.34 266311 14 3520 264419 1.31 267939 15 3458 270622 1.26 274080 16 3520 266659 1.30 270179 17 3427 263992 1.28 267419 18 3582 271207 1.30 274789 19 3416 266644 1.26 270060 20 3444 265410 1.28 268854 21 3398 269926 1.24 273324 22 3411 265920 1.27 269331 23 3501 266911 1.29 270412 24 3679 269583 1.35 273262 25 3510 265524 1.30 269034 26 3699 261502 1.39 265201 27 3340 268286 1.23 271626 28 3329 261436 1.26 264765 29 3423 261257 1.29 264680 30 3262 260039 1.24 263301 31 3344 258705 1.28 262049 32 3319 254983 1.28 258302 33 3536 255640 1.36 259176 34 3445 247895 1.37 251340 35 3190 245561 1.28 248751 36 3060 246747 1.22 249807 37 3075 240509 1.26 243584 38 3042 236122 1.27 239164 39 2998 238832 1.24 241830 40 2852 233156 1.21 236008 41 2970 228859 1.28 231829 42 2900 228431 1.25 231331 43 2841 222177 1.26 225018 44 2735 217036 1.24 219771 45 2830 218639 1.28 221469 46 2636 212031 1.23 214667 47 2849 208329 1.35 211178 48 2584 207073 1.23 209657 49 2568 202197 1.25 204765 50 2468 196562 1.24 199030 51 2636 197085 1.32 199721 52 2509 190902 1.30 193411 53 2364 187071 1.25 189435 54 2349 185741 1.25 188090 55 2267 181176 1.24 183443 56 2319 177402 1.29 179721 57 2247 176903 1.25 179150 58 2151 170587 1.25 172738 59 2443 166574 1.45 169017 60 2131 166942 1.26 169073 61 2030 159880 1.25 161910 62 2161 155238 1.37 157399 63 1905 154480 1.22 156385 64 1853 148291 1.23 150144 65 1904 144310 1.30 146214 66 1751 142282 1.22 144033 67 1706 136993 1.23 138699 68 1745 133872 1.29 135617 69 1684 131169 1.27 132853 70 1654 125894 1.30 127548 71 1697 123083 1.36 124780 72 1521 120866 1.24 122387 73 1445 116130 1.23 117575 74 1396 112874 1.22 114270 75 1499 111048 1.33 112547 76 1400 104944 1.32 106344 77 1275 99362 1.27 100637 78 1159 92048 1.24 93207 79 961 73111 1.30 74072 80 432 34551 1.23 34983 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 19083 708668 2.62 727751 2 16987 702299 2.36 719286 3 15317 712098 2.11 727415 4 14382 710503 1.98 724885 5 14388 696803 2.02 711191 6 14039 678304 2.03 692343 7 13150 680355 1.90 693505 8 12962 669940 1.90 682902 9 13282 675152 1.93 688434 10 13146 680988 1.89 694134 11 12826 664596 1.89 677422 12 13179 662259 1.95 675438 13 14025 671647 2.05 685672 14 12994 664288 1.92 677282 15 13307 671732 1.94 685039 16 13400 676940 1.94 690340 17 13282 669626 1.94 682908 18 13286 674784 1.93 688070 19 13314 681875 1.92 695189 20 13208 672656 1.93 685864 21 13201 675223 1.92 688424 22 13230 675297 1.92 688527 23 12926 674546 1.88 687472 24 13215 671578 1.93 684793 25 12303 675418 1.79 687721 26 11863 666382 1.75 678245 27 11576 665222 1.71 676798 28 11198 668082 1.65 679280 29 11110 655278 1.67 666388 30 10762 652208 1.62 662970 31 10692 661976 1.59 672668 32 10153 644159 1.55 654312 33 10460 636705 1.62 647165 34 10545 639052 1.62 649597 35 9571 630503 1.50 640074 36 9232 625575 1.45 634807 37 9049 624074 1.43 633123 38 8774 609787 1.42 618561 39 8658 607140 1.41 615798 40 8582 605596 1.40 614178 41 8452 593452 1.40 601904 42 8065 584748 1.36 592813 43 8017 580186 1.36 588203 44 7765 566726 1.35 574491 45 7709 557817 1.36 565526 46 7547 558094 1.33 565641 47 7494 544668 1.36 552162 48 7206 540734 1.32 547940 49 7250 536071 1.33 543321 50 6887 517275 1.31 524162 51 7009 507861 1.36 514870 52 6542 508468 1.27 515010 53 6433 488726 1.30 495159 54 6075 478863 1.25 484938 55 6104 475541 1.27 481645 56 6020 464573 1.28 470593 57 5921 459029 1.27 464950 58 5848 448030 1.29 453878 59 6290 439736 1.41 446026 60 5511 430977 1.26 436488 61 5653 420744 1.33 426397 62 5605 409670 1.35 415275 63 5199 401881 1.28 407080 64 5143 398856 1.27 403999 65 5110 382973 1.32 388083 66 4819 372642 1.28 377461 67 4549 367556 1.22 372105 68 4661 358723 1.28 363384 69 4407 351340 1.24 355747 70 4224 340951 1.22 345175 71 4380 329931 1.31 334311 72 4039 322539 1.24 326578 73 3998 311082 1.27 315080 74 3773 299544 1.24 303317 75 3992 290650 1.35 294642 76 3723 282383 1.30 286106 77 3346 266920 1.24 270266 78 3081 245697 1.24 248778 79 2456 199680 1.22 202136 80 1128 92097 1.21 93225 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 67309 23042 74.50 90351 2 53380 15743 77.22 69123 3 46423 13690 77.23 60113 4 40085 12237 76.61 52322 5 39086 11634 77.06 50720 6 37577 11387 76.74 48964 7 37562 11806 76.09 49368 8 36017 10475 77.47 46492 9 35030 10253 77.36 45283 10 35088 10127 77.60 45215 11 34434 9916 77.64 44350 12 33231 9371 78.00 42602 13 32505 9076 78.17 41581 14 31644 8854 78.14 40498 15 30620 8753 77.77 39373 16 29692 8369 78.01 38061 17 28864 8139 78.00 37003 18 27593 7741 78.09 35334 19 26178 7334 78.12 33512 20 25204 7129 77.95 32333 21 24752 6865 78.29 31617 22 24075 6725 78.17 30800 23 23294 6495 78.20 29789 24 22386 6193 78.33 28579 25 22054 6262 77.89 28316 26 21378 5988 78.12 27366 27 20509 5600 78.55 26109 28 19770 5435 78.44 25205 29 19042 5277 78.30 24319 30 18267 4895 78.87 23162 31 18077 4963 78.46 23040 32 17537 4971 77.91 22508 33 16901 4763 78.01 21664 34 16474 4619 78.10 21093 35 16075 4404 78.50 20479 36 15037 4189 78.21 19226 37 14599 4045 78.30 18644 38 14475 3874 78.89 18349 39 13878 3837 78.34 17715 40 13375 3801 77.87 17176 41 12741 3539 78.26 16280 42 12269 3349 78.56 15618 43 12001 3281 78.53 15282 44 11663 3240 78.26 14903 45 11170 3066 78.46 14236 46 10775 2997 78.24 13772 47 10433 3014 77.59 13447 48 9997 2813 78.04 12810 49 9768 2751 78.03 12519 50 9320 2696 77.56 12016 51 8958 2534 77.95 11492 52 8655 2379 78.44 11034 53 8378 2337 78.19 10715 54 8400 2297 78.53 10697 55 8005 2213 78.34 10218 56 7677 2234 77.46 9911 57 7659 2236 77.40 9895 58 7212 2039 77.96 9251 59 7022 1961 78.17 8983 60 6578 1825 78.28 8403 61 6382 1795 78.05 8177 62 6371 1789 78.08 8160 63 6038 1700 78.03 7738 64 5945 1670 78.07 7615 65 5619 1613 77.70 7232 66 5524 1543 78.17 7067 67 5087 1564 76.48 6651 68 5065 1468 77.53 6533 69 4955 1408 77.87 6363 70 4836 1383 77.76 6219 71 4556 1388 76.65 5944 72 4449 1278 77.68 5727 73 4289 1305 76.67 5594 74 4091 1204 77.26 5295 75 3979 1163 77.38 5142 76 3814 1158 76.71 4972 77 3498 1026 77.32 4524 78 3288 996 76.75 4284 79 2729 872 75.78 3601 80 1849 614 75.07 2463 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 5281 153237 3.33 158518 2 2438 110890 2.15 113328 3 2397 102908 2.28 105305 4 1294 94010 1.36 95304 5 1537 86076 1.75 87613 6 1765 83901 2.06 85666 7 1165 83420 1.38 84585 8 1285 83601 1.51 84886 9 904 77305 1.16 78209 10 920 74881 1.21 75801 11 961 72783 1.30 73744 12 868 71959 1.19 72827 13 835 68444 1.21 69279 14 794 66051 1.19 66845 15 798 65297 1.21 66095 16 761 63060 1.19 63821 17 722 59738 1.19 60460 18 738 58856 1.24 59594 19 657 55624 1.17 56281 20 696 54032 1.27 54728 21 649 52472 1.22 53121 22 657 50213 1.29 50870 23 607 49099 1.22 49706 24 624 48395 1.27 49019 25 565 45148 1.24 45713 26 589 44144 1.32 44733 27 589 43681 1.33 44270 28 562 41775 1.33 42337 29 510 40550 1.24 41060 30 482 38527 1.24 39009 31 508 38078 1.32 38586 32 443 36535 1.20 36978 33 498 35820 1.37 36318 34 377 33674 1.11 34051 35 413 32956 1.24 33369 36 406 31809 1.26 32215 37 351 30201 1.15 30552 38 380 29476 1.27 29856 39 382 29029 1.30 29411 40 328 27841 1.16 28169 41 342 26871 1.26 27213 42 356 26326 1.33 26682 43 335 24716 1.34 25051 44 308 24024 1.27 24332 45 297 23585 1.24 23882 46 302 22588 1.32 22890 47 287 22052 1.28 22339 48 242 21245 1.13 21487 49 255 20367 1.24 20622 50 260 19595 1.31 19855 51 230 19437 1.17 19667 52 227 18290 1.23 18517 53 225 17816 1.25 18041 54 197 17471 1.12 17668 55 198 16756 1.17 16954 56 196 16057 1.21 16253 57 211 15914 1.31 16125 58 198 14924 1.31 15122 59 179 14269 1.24 14448 60 174 14545 1.18 14719 61 183 13647 1.32 13830 62 157 13109 1.18 13266 63 167 12945 1.27 13112 64 164 12312 1.31 12476 65 153 11909 1.27 12062 66 128 11688 1.08 11816 67 152 10909 1.37 11061 68 133 10760 1.22 10893 69 145 10552 1.36 10697 70 115 10231 1.11 10346 71 142 9716 1.44 9858 72 107 9501 1.11 9608 73 121 9040 1.32 9161 74 115 8920 1.27 9035 75 97 8723 1.10 8820 76 98 8092 1.20 8190 77 99 7675 1.27 7774 78 87 7106 1.21 7193 79 81 6116 1.31 6197 80 55 4011 1.35 4066 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 11703 455600 2.50 467303 2 7351 314650 2.28 322001 3 5031 282621 1.75 287652 4 4000 255492 1.54 259492 5 4153 241689 1.69 245842 6 4224 226729 1.83 230953 7 2903 220648 1.30 223551 8 2701 213055 1.25 215756 9 2691 208881 1.27 211572 10 2649 204752 1.28 207401 11 2417 193617 1.23 196034 12 2357 187757 1.24 190114 13 2299 183974 1.23 186273 14 2260 176926 1.26 179186 15 2112 173892 1.20 176004 16 2082 169562 1.21 171644 17 2016 162510 1.23 164526 18 1952 158537 1.22 160489 19 1937 153508 1.25 155445 20 1833 147898 1.22 149731 21 1768 143377 1.22 145145 22 1742 137540 1.25 139282 23 1702 133657 1.26 135359 24 1597 128735 1.23 130332 25 1653 125944 1.30 127597 26 1528 121471 1.24 122999 27 1607 117780 1.35 119387 28 1422 114286 1.23 115708 29 1425 109603 1.28 111028 30 1310 107027 1.21 108337 31 1372 106036 1.28 107408 32 1223 100107 1.21 101330 33 1367 97066 1.39 98433 34 1223 95421 1.27 96644 35 1179 91973 1.27 93152 36 1142 89599 1.26 90741 37 1112 87414 1.26 88526 38 1056 83753 1.25 84809 39 1023 81070 1.25 82093 40 944 79165 1.18 80109 41 961 76878 1.23 77839 42 909 73614 1.22 74523 43 925 72259 1.26 73184 44 885 68925 1.27 69810 45 884 67019 1.30 67903 46 812 65813 1.22 66625 47 847 63476 1.32 64323 48 797 62911 1.25 63708 49 767 61205 1.24 61972 50 692 57791 1.18 58483 51 710 55644 1.26 56354 52 712 55565 1.27 56277 53 704 51856 1.34 52560 54 620 50305 1.22 50925 55 628 49599 1.25 50227 56 584 47651 1.21 48235 57 616 46602 1.30 47218 58 549 44471 1.22 45020 59 551 43666 1.25 44217 60 492 41999 1.16 42491 61 557 40027 1.37 40584 62 486 39049 1.23 39535 63 487 38310 1.26 38797 64 491 37475 1.29 37966 65 441 35360 1.23 35801 66 389 33973 1.13 34362 67 433 33303 1.28 33736 68 365 33042 1.09 33407 69 387 32102 1.19 32489 70 399 30743 1.28 31142 71 390 29761 1.29 30151 72 396 29239 1.34 29635 73 323 27574 1.16 27897 74 346 26418 1.29 26764 75 315 25318 1.23 25633 76 306 24329 1.24 24635 77 284 23386 1.20 23670 78 245 21905 1.11 22150 79 236 18982 1.23 19218 80 164 12635 1.28 12799