Bismark

Bismark Processing Report

/Volumes/web/Athaliana/20180411_trimgalore_10bp_Cvirginica_MBD/zr2096_2_s1_R1_val_1.fq.gz and /Volumes/web/Athaliana/20180411_trimgalore_10bp_Cvirginica_MBD/zr2096_2_s1_R2_val_2.fq.gz

Data processed at 12:50 on 2018-05-29


Alignment

Sequence pairs analysed in total 30325606
Paired-end alignments with a unique best hit 5898474
Pairs without alignments under any condition 20848304
Pairs that did not map uniquely 3578828
Genomic sequence context not extractable (edges of chromosomes) 1

Cytosine Methylation

Total C's analysed 151530094
Methylated C's in CpG context 17256045
Methylated C's in CHG context 486239
Methylated C's in CHH context 1545672
Methylated C's in Unknown context 10005
Unmethylated C's in CpG context 4550890
Unmethylated C's in CHG context 35828631
Unmethylated C's in CHH context 91862617
Unmethylated C's in Unknown context 84144
Percentage methylation (CpG context) 79.1%
Percentage methylation (CHG context) 1.3%
Percentage methylation (CHH context) 1.7%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 1484169 original top strand
CTOT 1462149 complementary to original top strand
CTOB 1465295 complementary to original bottom strand
OB 1486860 original bottom strand