CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 44988 13782 76.55 58770 2 49869 13378 78.85 63247 3 46807 13058 78.19 59865 4 45966 12964 78.00 58930 5 45805 12687 78.31 58492 6 46200 12943 78.12 59143 7 48221 13323 78.35 61544 8 46645 13052 78.14 59697 9 46607 12635 78.67 59242 10 48669 12888 79.06 61557 11 49626 13389 78.75 63015 12 48759 13075 78.85 61834 13 48868 13020 78.96 61888 14 49000 13106 78.90 62106 15 49400 12908 79.28 62308 16 49148 13014 79.06 62162 17 49051 13044 78.99 62095 18 48538 12674 79.29 61212 19 48915 12860 79.18 61775 20 48579 12627 79.37 61206 21 48573 13005 78.88 61578 22 49077 12588 79.59 61665 23 48646 12900 79.04 61546 24 48939 12596 79.53 61535 25 49091 12934 79.15 62025 26 48802 13006 78.96 61808 27 48298 12672 79.22 60970 28 48499 12731 79.21 61230 29 47679 12537 79.18 60216 30 47349 12394 79.25 59743 31 48275 12575 79.33 60850 32 47746 12665 79.04 60411 33 47815 12252 79.60 60067 34 48560 12040 80.13 60600 35 47216 12216 79.45 59432 36 46752 11980 79.60 58732 37 46663 12015 79.52 58678 38 46256 12083 79.29 58339 39 46128 11899 79.49 58027 40 46776 11957 79.64 58733 41 45487 11765 79.45 57252 42 44144 11335 79.57 55479 43 44208 11455 79.42 55663 44 44139 11545 79.27 55684 45 43769 11085 79.79 54854 46 43277 11166 79.49 54443 47 43520 11309 79.37 54829 48 42415 10951 79.48 53366 49 41885 11043 79.14 52928 50 41145 10857 79.12 52002 51 40299 10462 79.39 50761 52 40242 10495 79.31 50737 53 39880 10108 79.78 49988 54 39179 10043 79.60 49222 55 39464 10110 79.61 49574 56 38659 10008 79.44 48667 57 38804 9824 79.80 48628 58 37450 9951 79.01 47401 59 36977 9701 79.22 46678 60 36094 9559 79.06 45653 61 36196 9222 79.70 45418 62 35137 9304 79.06 44441 63 34314 9221 78.82 43535 64 34010 8967 79.14 42977 65 33508 8614 79.55 42122 66 32766 8557 79.29 41323 67 32262 8320 79.50 40582 68 31780 8230 79.43 40010 69 31045 8103 79.30 39148 70 30830 8125 79.14 38955 71 30563 7904 79.45 38467 72 29768 7678 79.50 37446 73 29023 7662 79.11 36685 74 28003 7507 78.86 35510 75 27235 7019 79.51 34254 76 26634 6965 79.27 33599 77 25563 6728 79.16 32291 78 23987 6248 79.34 30235 79 19506 5096 79.29 24602 80 9491 2608 78.44 12099 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 3671 95208 3.71 98879 2 2014 97794 2.02 99808 3 1720 100783 1.68 102503 4 1407 99612 1.39 101019 5 1537 98356 1.54 99893 6 1525 100319 1.50 101844 7 1443 100161 1.42 101604 8 1415 103308 1.35 104723 9 1334 100917 1.30 102251 10 1330 100707 1.30 102037 11 1312 100473 1.29 101785 12 1273 101342 1.24 102615 13 1376 99171 1.37 100547 14 1382 100485 1.36 101867 15 1313 101874 1.27 103187 16 1342 100691 1.32 102033 17 1351 100023 1.33 101374 18 1320 102296 1.27 103616 19 1346 100493 1.32 101839 20 1372 100211 1.35 101583 21 1342 101724 1.30 103066 22 1320 100537 1.30 101857 23 1336 100241 1.32 101577 24 1439 101959 1.39 103398 25 1306 99866 1.29 101172 26 1362 99414 1.35 100776 27 1252 101097 1.22 102349 28 1248 99369 1.24 100617 29 1360 100337 1.34 101697 30 1286 98668 1.29 99954 31 1285 99044 1.28 100329 32 1305 98325 1.31 99630 33 1395 99181 1.39 100576 34 1398 96433 1.43 97831 35 1273 95644 1.31 96917 36 1299 96241 1.33 97540 37 1150 93842 1.21 94992 38 1182 93368 1.25 94550 39 1201 94531 1.25 95732 40 1237 92919 1.31 94156 41 1194 91716 1.29 92910 42 1175 92560 1.25 93735 43 1099 90233 1.20 91332 44 1122 88626 1.25 89748 45 1106 90185 1.21 91291 46 1111 88044 1.25 89155 47 1156 86467 1.32 87623 48 1101 85947 1.26 87048 49 1090 84682 1.27 85772 50 1070 83270 1.27 84340 51 1176 84054 1.38 85230 52 1061 81806 1.28 82867 53 1024 80754 1.25 81778 54 955 80420 1.17 81375 55 1026 79247 1.28 80273 56 1077 78296 1.36 79373 57 1008 78882 1.26 79890 58 949 76562 1.22 77511 59 1028 75190 1.35 76218 60 973 75715 1.27 76688 61 930 72884 1.26 73814 62 1004 71603 1.38 72607 63 912 71205 1.26 72117 64 900 69612 1.28 70512 65 854 68155 1.24 69009 66 861 67731 1.26 68592 67 789 66252 1.18 67041 68 786 64862 1.20 65648 69 787 63569 1.22 64356 70 728 62768 1.15 63496 71 834 60732 1.35 61566 72 730 60363 1.19 61093 73 738 58614 1.24 59352 74 722 57444 1.24 58166 75 756 57538 1.30 58294 76 704 54727 1.27 55431 77 659 52098 1.25 52757 78 614 49222 1.23 49836 79 483 39822 1.20 40305 80 255 19088 1.32 19343 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 7546 285781 2.57 293327 2 6782 284306 2.33 291088 3 6241 290587 2.10 296828 4 5806 290485 1.96 296291 5 5604 283741 1.94 289345 6 5473 277014 1.94 282487 7 5287 279251 1.86 284538 8 5103 275173 1.82 280276 9 5309 276817 1.88 282126 10 5382 279354 1.89 284736 11 5319 271711 1.92 277030 12 5149 272436 1.85 277585 13 5477 273982 1.96 279459 14 5241 272325 1.89 277566 15 5203 274236 1.86 279439 16 5372 277707 1.90 283079 17 5084 275979 1.81 281063 18 5357 277233 1.90 282590 19 5327 278756 1.88 284083 20 5218 275920 1.86 281138 21 5169 277340 1.83 282509 22 5337 276623 1.89 281960 23 5104 276617 1.81 281721 24 5122 274883 1.83 280005 25 4820 276506 1.71 281326 26 4722 273549 1.70 278271 27 4406 273993 1.58 278399 28 4508 275311 1.61 279819 29 4260 271036 1.55 275296 30 4252 270080 1.55 274332 31 4222 276891 1.50 281113 32 3988 268036 1.47 272024 33 4122 265700 1.53 269822 34 4124 267916 1.52 272040 35 3673 266113 1.36 269786 36 3565 264798 1.33 268363 37 3556 264791 1.33 268347 38 3443 260805 1.30 264248 39 3367 260108 1.28 263475 40 3455 260707 1.31 264162 41 3297 257966 1.26 261263 42 3307 254733 1.28 258040 43 3255 255271 1.26 258526 44 3243 249451 1.28 252694 45 3159 246830 1.26 249989 46 3090 248719 1.23 251809 47 3153 245315 1.27 248468 48 2926 244877 1.18 247803 49 2972 245062 1.20 248034 50 2930 237206 1.22 240136 51 2971 233293 1.26 236264 52 2935 236079 1.23 239014 53 2803 227961 1.21 230764 54 2698 225072 1.18 227770 55 2680 224579 1.18 227259 56 2604 220483 1.17 223087 57 2676 220742 1.20 223418 58 2735 215872 1.25 218607 59 2846 215238 1.31 218084 60 2559 210938 1.20 213497 61 2517 207173 1.20 209690 62 2635 203987 1.28 206622 63 2366 201650 1.16 204016 64 2421 202082 1.18 204503 65 2297 195471 1.16 197768 66 2346 191116 1.21 193462 67 2307 190181 1.20 192488 68 2276 188677 1.19 190953 69 2131 185741 1.13 187872 70 2222 181138 1.21 183360 71 2275 177412 1.27 179687 72 2077 175506 1.17 177583 73 1980 169828 1.15 171808 74 1970 164847 1.18 166817 75 2087 161269 1.28 163356 76 1880 157578 1.18 159458 77 1823 151031 1.19 152854 78 1640 141356 1.15 142996 79 1417 116916 1.20 118333 80 647 54682 1.17 55329 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 30176 10010 75.09 40186 2 27781 7667 78.37 35448 3 25337 7022 78.30 32359 4 22405 6590 77.27 28995 5 22057 6203 78.05 28260 6 21660 6233 77.65 27893 7 22341 6482 77.51 28823 8 21109 6018 77.82 27127 9 20844 5736 78.42 26580 10 20854 5783 78.29 26637 11 20660 5826 78.00 26486 12 19891 5547 78.19 25438 13 19581 5246 78.87 24827 14 19526 5345 78.51 24871 15 19345 5140 79.01 24485 16 18635 5002 78.84 23637 17 18253 4864 78.96 23117 18 17357 4626 78.96 21983 19 17105 4430 79.43 21535 20 16689 4394 79.16 21083 21 16180 4330 78.89 20510 22 16113 4165 79.46 20278 23 15501 4133 78.95 19634 24 15207 3920 79.51 19127 25 14802 4022 78.63 18824 26 14503 4091 78.00 18594 27 14148 3820 78.74 17968 28 13751 3707 78.77 17458 29 13462 3602 78.89 17064 30 12998 3508 78.75 16506 31 12933 3345 79.45 16278 32 12734 3398 78.94 16132 33 12340 3259 79.11 15599 34 12092 3078 79.71 15170 35 11559 3147 78.60 14706 36 11211 2967 79.07 14178 37 11226 2866 79.66 14092 38 10868 2863 79.15 13731 39 10741 2765 79.53 13506 40 10449 2701 79.46 13150 41 10082 2615 79.40 12697 42 9676 2609 78.76 12285 43 9424 2468 79.25 11892 44 9228 2396 79.39 11624 45 8987 2363 79.18 11350 46 8669 2309 78.97 10978 47 8706 2348 78.76 11054 48 8461 2173 79.57 10634 49 8067 2202 78.56 10269 50 8015 2066 79.51 10081 51 7647 2120 78.29 9767 52 7506 1971 79.20 9477 53 7177 1933 78.78 9110 54 7004 1923 78.46 8927 55 6943 1852 78.94 8795 56 7073 1817 79.56 8890 57 6757 1839 78.61 8596 58 6329 1797 77.89 8126 59 6194 1660 78.86 7854 60 6017 1672 78.25 7689 61 6027 1634 78.67 7661 62 5786 1673 77.57 7459 63 5644 1520 78.78 7164 64 5522 1492 78.73 7014 65 5212 1421 78.58 6633 66 5252 1362 79.41 6614 67 5112 1382 78.72 6494 68 5115 1394 78.58 6509 69 4708 1332 77.95 6040 70 4747 1293 78.59 6040 71 4610 1230 78.94 5840 72 4448 1238 78.23 5686 73 4338 1151 79.03 5489 74 4252 1145 78.78 5397 75 3996 1111 78.25 5107 76 4026 1056 79.22 5082 77 3705 1050 77.92 4755 78 3475 945 78.62 4420 79 2863 910 75.88 3773 80 1995 593 77.09 2588 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 2723 66611 3.93 69334 2 1264 55723 2.22 56987 3 1361 53103 2.50 54464 4 751 51282 1.44 52033 5 884 47654 1.82 48538 6 964 46987 2.01 47951 7 681 46903 1.43 47584 8 766 47887 1.57 48653 9 582 44539 1.29 45121 10 555 43427 1.26 43982 11 568 42386 1.32 42954 12 522 42176 1.22 42698 13 490 40705 1.19 41195 14 543 39539 1.35 40082 15 493 39527 1.23 40020 16 476 38338 1.23 38814 17 442 36635 1.19 37077 18 474 36494 1.28 36968 19 463 35218 1.30 35681 20 418 34308 1.20 34726 21 414 33464 1.22 33878 22 376 32018 1.16 32394 23 420 32002 1.30 32422 24 375 31448 1.18 31823 25 391 30075 1.28 30466 26 353 29672 1.18 30025 27 374 29453 1.25 29827 28 342 28060 1.20 28402 29 376 28016 1.32 28392 30 355 26946 1.30 27301 31 340 26689 1.26 27029 32 328 25736 1.26 26064 33 332 25667 1.28 25999 34 267 24126 1.09 24393 35 310 23533 1.30 23843 36 282 23189 1.20 23471 37 293 22420 1.29 22713 38 275 21807 1.25 22082 39 264 21667 1.20 21931 40 250 21038 1.17 21288 41 272 20446 1.31 20718 42 219 20018 1.08 20237 43 241 19154 1.24 19395 44 216 18718 1.14 18934 45 218 18571 1.16 18789 46 188 18002 1.03 18190 47 201 17461 1.14 17662 48 189 17110 1.09 17299 49 229 16587 1.36 16816 50 185 16078 1.14 16263 51 175 15808 1.09 15983 52 177 15547 1.13 15724 53 174 15098 1.14 15272 54 183 14657 1.23 14840 55 162 14349 1.12 14511 56 153 13794 1.10 13947 57 191 13911 1.35 14102 58 150 13238 1.12 13388 59 156 13115 1.18 13271 60 166 12981 1.26 13147 61 181 11968 1.49 12149 62 135 12194 1.09 12329 63 135 11738 1.14 11873 64 147 11287 1.29 11434 65 129 11068 1.15 11197 66 150 10819 1.37 10969 67 113 10512 1.06 10625 68 136 10357 1.30 10493 69 127 10045 1.25 10172 70 104 9607 1.07 9711 71 142 9438 1.48 9580 72 125 9361 1.32 9486 73 124 9100 1.34 9224 74 104 8815 1.17 8919 75 102 8607 1.17 8709 76 90 8248 1.08 8338 77 103 7844 1.30 7947 78 87 7355 1.17 7442 79 56 6245 0.89 6301 80 53 4163 1.26 4216 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 5275 207060 2.48 212335 2 3767 165030 2.23 168797 3 2672 157655 1.67 160327 4 2253 147339 1.51 149592 5 2315 142079 1.60 144394 6 2465 134641 1.80 137106 7 1662 131947 1.24 133609 8 1576 129733 1.20 131309 9 1491 128245 1.15 129736 10 1481 125913 1.16 127394 11 1413 120614 1.16 122027 12 1364 117865 1.14 119229 13 1411 116427 1.20 117838 14 1324 113335 1.15 114659 15 1281 112439 1.13 113720 16 1241 110287 1.11 111528 17 1222 107205 1.13 108427 18 1267 105283 1.19 106550 19 1196 102778 1.15 103974 20 1168 99822 1.16 100990 21 1215 97678 1.23 98893 22 1102 94944 1.15 96046 23 1144 93672 1.21 94816 24 1114 91353 1.20 92467 25 1133 89206 1.25 90339 26 1016 87271 1.15 88287 27 1062 84996 1.23 86058 28 912 83813 1.08 84725 29 927 81034 1.13 81961 30 958 78922 1.20 79880 31 985 79151 1.23 80136 32 879 75280 1.15 76159 33 949 73397 1.28 74346 34 829 73078 1.12 73907 35 791 71140 1.10 71931 36 802 69975 1.13 70777 37 758 68396 1.10 69154 38 769 66066 1.15 66835 39 762 65125 1.16 65887 40 712 63798 1.10 64510 41 762 62166 1.21 62928 42 712 60448 1.16 61160 43 765 59670 1.27 60435 44 665 57815 1.14 58480 45 627 55890 1.11 56517 46 674 55681 1.20 56355 47 676 54361 1.23 55037 48 622 53672 1.15 54294 49 570 53677 1.05 54247 50 549 50402 1.08 50951 51 572 49340 1.15 49912 52 546 49335 1.09 49881 53 519 46610 1.10 47129 54 549 45329 1.20 45878 55 517 44757 1.14 45274 56 527 43825 1.19 44352 57 593 43144 1.36 43737 58 487 41544 1.16 42031 59 489 41297 1.17 41786 60 454 39341 1.14 39795 61 464 38319 1.20 38783 62 386 37453 1.02 37839 63 420 37126 1.12 37546 64 411 36672 1.11 37083 65 426 35300 1.19 35726 66 372 34026 1.08 34398 67 377 33601 1.11 33978 68 401 33609 1.18 34010 69 365 32605 1.11 32970 70 334 31546 1.05 31880 71 392 30570 1.27 30962 72 351 30550 1.14 30901 73 340 28803 1.17 29143 74 333 27993 1.18 28326 75 314 27271 1.14 27585 76 304 26674 1.13 26978 77 260 25380 1.01 25640 78 290 23528 1.22 23818 79 230 21122 1.08 21352 80 181 13970 1.28 14151