zr2096_10_s1_R1_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 3434342 lines in total Total number of methylation call strings processed: 6868684 Final Cytosine Methylation Report ================================= Total number of C's analysed: 60855875 Total methylated C's in CpG context: 6802392 Total methylated C's in CHG context: 224742 Total methylated C's in CHH context: 617812 Total C to T conversions in CpG context: 2072612 Total C to T conversions in CHG context: 13857622 Total C to T conversions in CHH context: 37280695 C methylated in CpG context: 76.6% C methylated in CHG context: 1.6% C methylated in CHH context: 1.6%