CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 71735 24946 74.20 96681 2 77285 24391 76.01 101676 3 75506 24189 75.74 99695 4 75972 23879 76.09 99851 5 75569 23792 76.05 99361 6 75789 23855 76.06 99644 7 78071 25257 75.56 103328 8 77576 24435 76.05 102011 9 75856 23399 76.43 99255 10 79403 23891 76.87 103294 11 79626 24356 76.58 103982 12 79783 23567 77.20 103350 13 80473 24172 76.90 104645 14 80453 24190 76.88 104643 15 80656 23626 77.34 104282 16 81987 24317 77.13 106304 17 80854 24184 76.98 105038 18 79675 23750 77.04 103425 19 80618 23434 77.48 104052 20 80153 23821 77.09 103974 21 80268 23452 77.39 103720 22 81160 23693 77.40 104853 23 81197 24103 77.11 105300 24 80409 23831 77.14 104240 25 81477 24009 77.24 105486 26 81023 24122 77.06 105145 27 78991 23590 77.00 102581 28 80213 23863 77.07 104076 29 78906 23536 77.03 102442 30 78808 22961 77.44 101769 31 79841 23716 77.10 103557 32 79327 23161 77.40 102488 33 78370 23083 77.25 101453 34 79283 23430 77.19 102713 35 78075 23008 77.24 101083 36 76623 22206 77.53 98829 37 76558 22495 77.29 99053 38 76595 22767 77.09 99362 39 76535 22368 77.38 98903 40 75833 22545 77.08 98378 41 74684 21879 77.34 96563 42 72904 21476 77.25 94380 43 73122 21247 77.49 94369 44 72448 21529 77.09 93977 45 71244 20849 77.36 92093 46 71635 20989 77.34 92624 47 70690 20931 77.15 91621 48 69198 20157 77.44 89355 49 69172 20060 77.52 89232 50 68205 20123 77.22 88328 51 65819 19510 77.14 85329 52 66043 19600 77.11 85643 53 65398 19085 77.41 84483 54 64327 19066 77.14 83393 55 64359 18792 77.40 83151 56 63568 18738 77.23 82306 57 62645 18490 77.21 81135 58 61452 18368 76.99 79820 59 60250 17924 77.07 78174 60 58808 17758 76.81 76566 61 58564 17715 76.78 76279 62 57042 16974 77.07 74016 63 55857 16700 76.98 72557 64 55273 16471 77.04 71744 65 54000 16159 76.97 70159 66 52484 15741 76.93 68225 67 52252 15709 76.89 67961 68 51195 15294 77.00 66489 69 49607 15152 76.60 64759 70 49364 15113 76.56 64477 71 48196 14781 76.53 62977 72 46300 14191 76.54 60491 73 45769 14068 76.49 59837 74 44933 13609 76.75 58542 75 42754 12885 76.84 55639 76 41859 12969 76.35 54828 77 39984 12205 76.61 52189 78 36588 11264 76.46 47852 79 29343 9075 76.38 38418 80 13273 4261 75.70 17534 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 4802 154338 3.02 159140 2 3170 157614 1.97 160784 3 2955 162610 1.78 165565 4 2677 162240 1.62 164917 5 2897 158794 1.79 161691 6 2761 162506 1.67 165267 7 2673 163917 1.60 166590 8 2713 164575 1.62 167288 9 2567 164436 1.54 167003 10 2627 162115 1.59 164742 11 2677 161452 1.63 164129 12 2606 163404 1.57 166010 13 2558 162130 1.55 164688 14 2680 161406 1.63 164086 15 2680 165843 1.59 168523 16 2593 164040 1.56 166633 17 2661 161161 1.62 163822 18 2597 165724 1.54 168321 19 2594 163333 1.56 165927 20 2543 162026 1.55 164569 21 2621 164385 1.57 167006 22 2523 162459 1.53 164982 23 2633 162749 1.59 165382 24 2561 165650 1.52 168211 25 2539 162723 1.54 165262 26 2610 160305 1.60 162915 27 2538 164230 1.52 166768 28 2544 161590 1.55 164134 29 2591 161915 1.58 164506 30 2584 161259 1.58 163843 31 2505 161111 1.53 163616 32 2509 158758 1.56 161267 33 2545 160758 1.56 163303 34 2473 157616 1.54 160089 35 2453 154603 1.56 157056 36 2439 155998 1.54 158437 37 2395 151803 1.55 154198 38 2424 150299 1.59 152723 39 2335 153535 1.50 155870 40 2317 151147 1.51 153464 41 2352 148708 1.56 151060 42 2295 149685 1.51 151980 43 2200 145649 1.49 147849 44 2270 142876 1.56 145146 45 2218 145299 1.50 147517 46 2129 141731 1.48 143860 47 2193 139899 1.54 142092 48 2103 139392 1.49 141495 49 2133 137249 1.53 139382 50 2448 133791 1.80 136239 51 2143 135421 1.56 137564 52 2202 131741 1.64 133943 53 2066 129882 1.57 131948 54 2023 129713 1.54 131736 55 2016 127794 1.55 129810 56 1989 125781 1.56 127770 57 1910 125958 1.49 127868 58 1880 122169 1.52 124049 59 1880 121024 1.53 122904 60 1815 120779 1.48 122594 61 1826 116355 1.55 118181 62 1859 113671 1.61 115530 63 1747 114192 1.51 115939 64 1741 110834 1.55 112575 65 1606 108381 1.46 109987 66 1669 107261 1.53 108930 67 1616 104501 1.52 106117 68 1609 102467 1.55 104076 69 1499 101303 1.46 102802 70 1458 98199 1.46 99657 71 1460 96407 1.49 97867 72 1490 95672 1.53 97162 73 1371 92305 1.46 93676 74 1404 89507 1.54 90911 75 1326 89474 1.46 90800 76 1238 85086 1.43 86324 77 1239 80223 1.52 81462 78 1123 74332 1.49 75455 79 926 58453 1.56 59379 80 464 26990 1.69 27454 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 11522 451446 2.49 462968 2 10222 446564 2.24 456786 3 9381 451842 2.03 461223 4 8797 449774 1.92 458571 5 8329 437025 1.87 445354 6 8154 429527 1.86 437681 7 7742 429391 1.77 437133 8 7666 424325 1.77 431991 9 7888 426300 1.82 434188 10 8053 431021 1.83 439074 11 7577 419002 1.78 426579 12 7589 416422 1.79 424011 13 7614 422171 1.77 429785 14 7672 415281 1.81 422953 15 7685 419010 1.80 426695 16 7597 423784 1.76 431381 17 7568 418017 1.78 425585 18 7520 421750 1.75 429270 19 7782 425693 1.80 433475 20 7616 420046 1.78 427662 21 7777 422198 1.81 429975 22 7700 422050 1.79 429750 23 7636 420825 1.78 428461 24 7565 421915 1.76 429480 25 7461 421786 1.74 429247 26 7300 417321 1.72 424621 27 7149 418142 1.68 425291 28 7161 420554 1.67 427715 29 7249 413470 1.72 420719 30 6909 413958 1.64 420867 31 6944 422250 1.62 429194 32 6869 412956 1.64 419825 33 6784 409450 1.63 416234 34 6622 412280 1.58 418902 35 6696 408987 1.61 415683 36 6433 406899 1.56 413332 37 6384 408301 1.54 414685 38 6365 400961 1.56 407326 39 6195 399404 1.53 405599 40 6406 401048 1.57 407454 41 6171 394323 1.54 400494 42 5918 391805 1.49 397723 43 6007 391592 1.51 397599 44 6005 383491 1.54 389496 45 5739 379299 1.49 385038 46 5628 381484 1.45 387112 47 5759 375430 1.51 381189 48 5674 374737 1.49 380411 49 5771 374461 1.52 380232 50 6454 359891 1.76 366345 51 5432 359642 1.49 365074 52 5753 359768 1.57 365521 53 5305 347195 1.50 352500 54 5076 342910 1.46 347986 55 5123 342365 1.47 347488 56 5086 335872 1.49 340958 57 5021 334783 1.48 339804 58 4880 330690 1.45 335570 59 4881 325976 1.48 330857 60 4823 320826 1.48 325649 61 4749 315675 1.48 320424 62 4604 308531 1.47 313135 63 4616 305789 1.49 310405 64 4638 305129 1.50 309767 65 4262 295971 1.42 300233 66 4200 288536 1.43 292736 67 4174 286421 1.44 290595 68 4023 282532 1.40 286555 69 4148 276438 1.48 280586 70 3931 270388 1.43 274319 71 3853 263995 1.44 267848 72 3783 259894 1.43 263677 73 3689 252718 1.44 256407 74 3628 244818 1.46 248446 75 3472 238452 1.44 241924 76 3474 232827 1.47 236301 77 3315 219762 1.49 223077 78 2962 202192 1.44 205154 79 2542 162282 1.54 164824 80 1144 71600 1.57 72744 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 47889 18189 72.47 66078 2 41294 14087 74.56 55381 3 37722 12810 74.65 50532 4 35039 11903 74.64 46942 5 34655 11342 75.34 45997 6 33662 11255 74.94 44917 7 33641 11649 74.28 45290 8 32498 10722 75.19 43220 9 31579 10251 75.49 41830 10 31908 10410 75.40 42318 11 31681 10098 75.83 41779 12 30141 9628 75.79 39769 13 30455 9551 76.13 40006 14 29556 9433 75.81 38989 15 29132 8904 76.59 38036 16 28412 8867 76.21 37279 17 27467 8896 75.54 36363 18 26403 8329 76.02 34732 19 26086 7978 76.58 34064 20 25093 7937 75.97 33030 21 24554 7722 76.08 32276 22 24034 7439 76.36 31473 23 23423 7379 76.04 30802 24 23034 7099 76.44 30133 25 22973 7095 76.40 30068 26 21868 6937 75.92 28805 27 21100 6583 76.22 27683 28 20784 6349 76.60 27133 29 19982 6183 76.37 26165 30 19393 6095 76.09 25488 31 19209 6062 76.01 25271 32 18575 5802 76.20 24377 33 18072 5805 75.69 23877 34 18025 5799 75.66 23824 35 17400 5340 76.52 22740 36 16679 4981 77.00 21660 37 16145 5111 75.96 21256 38 15751 5017 75.84 20768 39 15705 4961 75.99 20666 40 15459 4781 76.38 20240 41 14448 4654 75.64 19102 42 13833 4447 75.67 18280 43 13846 4196 76.74 18042 44 13558 4205 76.33 17763 45 13000 4099 76.03 17099 46 12697 4216 75.07 16913 47 12509 4066 75.47 16575 48 11976 3832 75.76 15808 49 11568 3760 75.47 15328 50 11291 3675 75.44 14966 51 10680 3360 76.07 14040 52 10649 3436 75.61 14085 53 10484 3346 75.81 13830 54 10109 3279 75.51 13388 55 9902 3118 76.05 13020 56 9805 3138 75.76 12943 57 9407 3046 75.54 12453 58 9118 3047 74.95 12165 59 8781 2794 75.86 11575 60 8322 2764 75.07 11086 61 8304 2758 75.07 11062 62 7916 2641 74.98 10557 63 7855 2591 75.20 10446 64 7753 2410 76.29 10163 65 7385 2343 75.91 9728 66 6937 2305 75.06 9242 67 6950 2314 75.02 9264 68 6650 2204 75.11 8854 69 6552 2132 75.45 8684 70 6404 2098 75.32 8502 71 6372 2000 76.11 8372 72 5896 2126 73.50 8022 73 5746 2034 73.86 7780 74 5687 1960 74.37 7647 75 5389 1753 75.46 7142 76 5126 1778 74.25 6904 77 4931 1643 75.01 6574 78 4511 1608 73.72 6119 79 3897 1406 73.49 5303 80 2530 954 72.62 3484 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 3201 108523 2.87 111724 2 1835 87464 2.05 89299 3 1651 84276 1.92 85927 4 1282 77990 1.62 79272 5 1453 73930 1.93 75383 6 1409 72900 1.90 74309 7 1110 72269 1.51 73379 8 1156 71784 1.58 72940 9 1030 68034 1.49 69064 10 1109 66203 1.65 67312 11 1047 64521 1.60 65568 12 954 63452 1.48 64406 13 939 61037 1.52 61976 14 938 59663 1.55 60601 15 947 59733 1.56 60680 16 909 58130 1.54 59039 17 872 55542 1.55 56414 18 838 55258 1.49 56096 19 816 53514 1.50 54330 20 804 51165 1.55 51969 21 799 50689 1.55 51488 22 736 48246 1.50 48982 23 800 47999 1.64 48799 24 779 47347 1.62 48126 25 715 45171 1.56 45886 26 711 43623 1.60 44334 27 627 43770 1.41 44397 28 641 42337 1.49 42978 29 663 41856 1.56 42519 30 592 39744 1.47 40336 31 595 39038 1.50 39633 32 578 37855 1.50 38433 33 599 37361 1.58 37960 34 555 35794 1.53 36349 35 521 34470 1.49 34991 36 552 33861 1.60 34413 37 522 32197 1.60 32719 38 488 31463 1.53 31951 39 502 31436 1.57 31938 40 462 30512 1.49 30974 41 486 29757 1.61 30243 42 451 28366 1.57 28817 43 454 27962 1.60 28416 44 392 26589 1.45 26981 45 390 26523 1.45 26913 46 390 25718 1.49 26108 47 394 24637 1.57 25031 48 371 24144 1.51 24515 49 345 23684 1.44 24029 50 355 22831 1.53 23186 51 317 22450 1.39 22767 52 294 21655 1.34 21949 53 334 20647 1.59 20981 54 297 20543 1.43 20840 55 281 20007 1.39 20288 56 286 19324 1.46 19610 57 299 19483 1.51 19782 58 250 18294 1.35 18544 59 267 17801 1.48 18068 60 258 17566 1.45 17824 61 284 17004 1.64 17288 62 244 16266 1.48 16510 63 236 15957 1.46 16193 64 240 15417 1.53 15657 65 240 15124 1.56 15364 66 208 14901 1.38 15109 67 241 14078 1.68 14319 68 224 13487 1.63 13711 69 210 13208 1.57 13418 70 214 13205 1.59 13419 71 200 12749 1.54 12949 72 187 12466 1.48 12653 73 192 11993 1.58 12185 74 195 11509 1.67 11704 75 184 11506 1.57 11690 76 179 10787 1.63 10966 77 167 10165 1.62 10332 78 143 9422 1.50 9565 79 116 8092 1.41 8208 80 84 5437 1.52 5521 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 8283 331548 2.44 339831 2 5917 256999 2.25 262916 3 4695 237504 1.94 242199 4 3947 223013 1.74 226960 5 3989 211567 1.85 215556 6 3558 202225 1.73 205783 7 2993 196644 1.50 199637 8 2798 190646 1.45 193444 9 2702 188354 1.41 191056 10 2669 185449 1.42 188118 11 2551 176368 1.43 178919 12 2440 171392 1.40 173832 13 2377 168833 1.39 171210 14 2389 162699 1.45 165088 15 2335 160433 1.43 162768 16 2231 158341 1.39 160572 17 2164 151342 1.41 153506 18 2141 149892 1.41 152033 19 2143 147108 1.44 149251 20 2100 141919 1.46 144019 21 2081 139328 1.47 141409 22 1972 134724 1.44 136696 23 2044 131071 1.54 133115 24 1898 128049 1.46 129947 25 1853 124974 1.46 126827 26 1837 121031 1.50 122868 27 1827 119838 1.50 121665 28 1718 116607 1.45 118325 29 1661 112889 1.45 114550 30 1740 110551 1.55 112291 31 1573 110341 1.41 111914 32 1599 105220 1.50 106819 33 1526 102001 1.47 103527 34 1487 100579 1.46 102066 35 1437 97962 1.45 99399 36 1421 95665 1.46 97086 37 1456 94472 1.52 95928 38 1375 90883 1.49 92258 39 1341 88946 1.49 90287 40 1273 87624 1.43 88897 41 1243 85035 1.44 86278 42 1214 82415 1.45 83629 43 1172 80794 1.43 81966 44 1155 77942 1.46 79097 45 1114 75504 1.45 76618 46 1105 74894 1.45 75999 47 1034 72992 1.40 74026 48 1072 71844 1.47 72916 49 1026 70693 1.43 71719 50 945 67096 1.39 68041 51 937 65782 1.40 66719 52 911 65124 1.38 66035 53 938 61439 1.50 62377 54 839 59882 1.38 60721 55 853 59090 1.42 59943 56 807 57313 1.39 58120 57 828 56863 1.44 57691 58 807 54433 1.46 55240 59 785 53877 1.44 54662 60 756 51408 1.45 52164 61 744 50190 1.46 50934 62 676 48509 1.37 49185 63 694 47461 1.44 48155 64 733 47190 1.53 47923 65 693 45092 1.51 45785 66 637 43288 1.45 43925 67 599 43297 1.36 43896 68 619 42564 1.43 43183 69 715 41295 1.70 42010 70 598 39836 1.48 40434 71 545 38468 1.40 39013 72 594 37885 1.54 38479 73 543 36673 1.46 37216 74 533 35200 1.49 35733 75 472 34096 1.37 34568 76 540 33218 1.60 33758 77 462 31692 1.44 32154 78 430 29234 1.45 29664 79 340 25453 1.32 25793 80 271 16967 1.57 17238