CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 1 2 33.33 3 2 4 0 100.00 4 3 3 2 60.00 5 4 4 1 80.00 5 5 1 0 100.00 1 6 4 1 80.00 5 7 2 0 100.00 2 8 7 0 100.00 7 9 3 1 75.00 4 10 2 0 100.00 2 11 5 0 100.00 5 12 6 1 85.71 7 13 1 1 50.00 2 14 3 0 100.00 3 15 5 2 71.43 7 16 3 2 60.00 5 17 4 1 80.00 5 18 3 0 100.00 3 19 4 0 100.00 4 20 2 0 100.00 2 21 7 0 100.00 7 22 7 2 77.78 9 23 3 1 75.00 4 24 2 1 66.67 3 25 1 2 33.33 3 26 5 1 83.33 6 27 6 0 100.00 6 28 4 1 80.00 5 29 8 0 100.00 8 30 2 1 66.67 3 31 8 1 88.89 9 32 2 0 100.00 2 33 7 1 87.50 8 34 0 0 0 35 6 1 85.71 7 36 4 0 100.00 4 37 4 1 80.00 5 38 2 0 100.00 2 39 8 0 100.00 8 40 7 1 87.50 8 41 1 0 100.00 1 42 3 0 100.00 3 43 8 0 100.00 8 44 3 2 60.00 5 45 8 0 100.00 8 46 2 0 100.00 2 47 3 1 75.00 4 48 8 0 100.00 8 49 2 1 66.67 3 50 0 0 0 51 8 0 100.00 8 52 3 0 100.00 3 53 2 0 100.00 2 54 4 1 80.00 5 55 5 2 71.43 7 56 4 1 80.00 5 57 3 0 100.00 3 58 5 0 100.00 5 59 1 1 50.00 2 60 1 0 100.00 1 61 2 0 100.00 2 62 1 0 100.00 1 63 3 1 75.00 4 64 7 0 100.00 7 65 2 0 100.00 2 66 4 1 80.00 5 67 1 0 100.00 1 68 1 1 50.00 2 69 1 0 100.00 1 70 6 0 100.00 6 71 4 0 100.00 4 72 3 0 100.00 3 73 0 0 0 74 3 0 100.00 3 75 5 1 83.33 6 76 2 1 66.67 3 77 0 0 0 78 1 0 100.00 1 79 2 0 100.00 2 80 1 0 100.00 1 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 2 7 22.22 9 2 0 7 0.00 7 3 0 8 0.00 8 4 0 2 0.00 2 5 1 10 9.09 11 6 0 7 0.00 7 7 0 13 0.00 13 8 0 8 0.00 8 9 0 7 0.00 7 10 0 6 0.00 6 11 0 6 0.00 6 12 0 9 0.00 9 13 1 9 10.00 10 14 0 6 0.00 6 15 0 10 0.00 10 16 1 8 11.11 9 17 0 8 0.00 8 18 1 9 10.00 10 19 0 7 0.00 7 20 0 9 0.00 9 21 0 12 0.00 12 22 0 8 0.00 8 23 0 9 0.00 9 24 0 12 0.00 12 25 0 9 0.00 9 26 0 4 0.00 4 27 0 4 0.00 4 28 0 9 0.00 9 29 0 8 0.00 8 30 0 12 0.00 12 31 0 7 0.00 7 32 0 17 0.00 17 33 0 4 0.00 4 34 1 5 16.67 6 35 0 8 0.00 8 36 0 10 0.00 10 37 1 5 16.67 6 38 0 6 0.00 6 39 0 8 0.00 8 40 0 11 0.00 11 41 0 7 0.00 7 42 0 10 0.00 10 43 1 9 10.00 10 44 1 7 12.50 8 45 0 7 0.00 7 46 0 5 0.00 5 47 0 9 0.00 9 48 1 4 20.00 5 49 0 5 0.00 5 50 0 10 0.00 10 51 0 7 0.00 7 52 0 4 0.00 4 53 0 6 0.00 6 54 0 5 0.00 5 55 0 5 0.00 5 56 0 6 0.00 6 57 0 4 0.00 4 58 1 3 25.00 4 59 0 7 0.00 7 60 0 6 0.00 6 61 0 9 0.00 9 62 0 4 0.00 4 63 0 6 0.00 6 64 0 6 0.00 6 65 0 7 0.00 7 66 0 3 0.00 3 67 0 5 0.00 5 68 1 8 11.11 9 69 0 6 0.00 6 70 0 7 0.00 7 71 0 4 0.00 4 72 1 8 11.11 9 73 0 5 0.00 5 74 0 7 0.00 7 75 0 4 0.00 4 76 0 7 0.00 7 77 0 4 0.00 4 78 0 4 0.00 4 79 0 3 0.00 3 80 0 2 0.00 2 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 0 29 0.00 29 2 0 20 0.00 20 3 0 28 0.00 28 4 0 28 0.00 28 5 0 30 0.00 30 6 0 18 0.00 18 7 1 21 4.55 22 8 1 15 6.25 16 9 0 22 0.00 22 10 0 29 0.00 29 11 1 21 4.55 22 12 0 18 0.00 18 13 0 29 0.00 29 14 0 24 0.00 24 15 0 23 0.00 23 16 0 20 0.00 20 17 0 22 0.00 22 18 0 20 0.00 20 19 0 30 0.00 30 20 0 20 0.00 20 21 1 19 5.00 20 22 0 22 0.00 22 23 0 21 0.00 21 24 0 27 0.00 27 25 2 24 7.69 26 26 0 13 0.00 13 27 0 16 0.00 16 28 1 17 5.56 18 29 1 20 4.76 21 30 0 17 0.00 17 31 0 23 0.00 23 32 0 18 0.00 18 33 0 25 0.00 25 34 1 13 7.14 14 35 0 18 0.00 18 36 0 18 0.00 18 37 0 10 0.00 10 38 0 28 0.00 28 39 0 18 0.00 18 40 0 15 0.00 15 41 1 14 6.67 15 42 0 19 0.00 19 43 0 16 0.00 16 44 0 12 0.00 12 45 0 18 0.00 18 46 1 21 4.55 22 47 0 18 0.00 18 48 0 14 0.00 14 49 0 19 0.00 19 50 0 21 0.00 21 51 0 19 0.00 19 52 0 20 0.00 20 53 0 18 0.00 18 54 0 24 0.00 24 55 1 16 5.88 17 56 1 17 5.56 18 57 2 15 11.76 17 58 0 17 0.00 17 59 1 9 10.00 10 60 0 19 0.00 19 61 0 15 0.00 15 62 0 17 0.00 17 63 0 13 0.00 13 64 0 14 0.00 14 65 1 16 5.88 17 66 0 16 0.00 16 67 0 12 0.00 12 68 0 14 0.00 14 69 0 17 0.00 17 70 0 12 0.00 12 71 1 11 8.33 12 72 0 11 0.00 11 73 0 16 0.00 16 74 1 7 12.50 8 75 0 12 0.00 12 76 0 14 0.00 14 77 0 15 0.00 15 78 0 10 0.00 10 79 0 6 0.00 6 80 0 3 0.00 3 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 2 1 66.67 3 2 4 0 100.00 4 3 3 1 75.00 4 4 1 1 50.00 2 5 1 1 50.00 2 6 3 0 100.00 3 7 2 0 100.00 2 8 1 0 100.00 1 9 1 0 100.00 1 10 4 0 100.00 4 11 0 0 0 12 1 0 100.00 1 13 4 0 100.00 4 14 0 1 0.00 1 15 5 0 100.00 5 16 3 0 100.00 3 17 0 0 0 18 3 0 100.00 3 19 1 1 50.00 2 20 2 1 66.67 3 21 0 0 0 22 0 0 0 23 0 0 0 24 0 0 0 25 2 0 100.00 2 26 1 1 50.00 2 27 0 0 0 28 2 0 100.00 2 29 1 0 100.00 1 30 2 1 66.67 3 31 2 0 100.00 2 32 1 0 100.00 1 33 1 0 100.00 1 34 1 0 100.00 1 35 1 0 100.00 1 36 1 0 100.00 1 37 0 0 0 38 0 0 0 39 1 0 100.00 1 40 1 0 100.00 1 41 0 0 0 42 0 0 0 43 0 0 0 44 0 1 0.00 1 45 0 0 0 46 0 0 0 47 1 1 50.00 2 48 0 0 0 49 0 0 0 50 0 0 0 51 0 0 0 52 0 0 0 53 0 0 0 54 0 0 0 55 0 0 0 56 0 0 0 57 0 0 0 58 1 0 100.00 1 59 0 0 0 60 1 0 100.00 1 61 0 0 0 62 0 0 0 63 0 0 0 64 0 0 0 65 0 0 0 66 0 0 0 67 0 0 0 68 0 0 0 69 0 0 0 70 0 0 0 71 0 0 0 72 0 0 0 73 0 0 0 74 0 0 0 75 0 0 0 76 0 0 0 77 0 0 0 78 1 0 100.00 1 79 0 0 0 80 1 0 100.00 1 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 1 8 11.11 9 2 0 4 0.00 4 3 0 6 0.00 6 4 0 6 0.00 6 5 0 2 0.00 2 6 0 3 0.00 3 7 0 4 0.00 4 8 0 4 0.00 4 9 0 4 0.00 4 10 0 4 0.00 4 11 0 5 0.00 5 12 0 4 0.00 4 13 0 1 0.00 1 14 0 6 0.00 6 15 0 4 0.00 4 16 0 3 0.00 3 17 0 2 0.00 2 18 0 0 0 19 1 3 25.00 4 20 0 4 0.00 4 21 0 3 0.00 3 22 0 1 0.00 1 23 0 3 0.00 3 24 0 2 0.00 2 25 0 2 0.00 2 26 0 0 0 27 0 3 0.00 3 28 0 1 0.00 1 29 0 2 0.00 2 30 0 0 0 31 0 3 0.00 3 32 0 1 0.00 1 33 0 1 0.00 1 34 0 3 0.00 3 35 0 2 0.00 2 36 0 3 0.00 3 37 0 2 0.00 2 38 0 1 0.00 1 39 0 2 0.00 2 40 0 1 0.00 1 41 0 1 0.00 1 42 0 1 0.00 1 43 0 0 0 44 0 3 0.00 3 45 0 2 0.00 2 46 0 0 0 47 0 0 0 48 0 2 0.00 2 49 0 1 0.00 1 50 0 1 0.00 1 51 0 0 0 52 0 1 0.00 1 53 0 1 0.00 1 54 0 0 0 55 0 0 0 56 0 2 0.00 2 57 0 1 0.00 1 58 0 2 0.00 2 59 0 0 0 60 0 1 0.00 1 61 0 0 0 62 0 0 0 63 0 0 0 64 0 0 0 65 0 0 0 66 0 0 0 67 0 0 0 68 0 1 0.00 1 69 0 1 0.00 1 70 0 1 0.00 1 71 0 0 0 72 0 0 0 73 0 1 0.00 1 74 0 0 0 75 0 1 0.00 1 76 0 0 0 77 0 1 0.00 1 78 0 0 0 79 0 0 0 80 0 0 0 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 0 15 0.00 15 2 1 9 10.00 10 3 0 4 0.00 4 4 0 9 0.00 9 5 0 13 0.00 13 6 0 12 0.00 12 7 0 8 0.00 8 8 0 11 0.00 11 9 1 5 16.67 6 10 0 10 0.00 10 11 0 6 0.00 6 12 0 8 0.00 8 13 0 3 0.00 3 14 0 11 0.00 11 15 0 8 0.00 8 16 1 8 11.11 9 17 1 7 12.50 8 18 0 10 0.00 10 19 0 9 0.00 9 20 0 1 0.00 1 21 0 5 0.00 5 22 0 6 0.00 6 23 0 3 0.00 3 24 0 5 0.00 5 25 0 8 0.00 8 26 0 6 0.00 6 27 0 3 0.00 3 28 0 7 0.00 7 29 0 4 0.00 4 30 0 8 0.00 8 31 0 4 0.00 4 32 0 4 0.00 4 33 0 5 0.00 5 34 0 2 0.00 2 35 0 3 0.00 3 36 0 0 0 37 0 1 0.00 1 38 0 4 0.00 4 39 0 7 0.00 7 40 0 1 0.00 1 41 0 2 0.00 2 42 0 0 0 43 0 4 0.00 4 44 0 2 0.00 2 45 0 1 0.00 1 46 0 3 0.00 3 47 0 2 0.00 2 48 0 3 0.00 3 49 0 7 0.00 7 50 0 5 0.00 5 51 0 2 0.00 2 52 0 2 0.00 2 53 0 4 0.00 4 54 0 4 0.00 4 55 0 4 0.00 4 56 0 2 0.00 2 57 0 0 0 58 0 1 0.00 1 59 0 0 0 60 0 1 0.00 1 61 0 2 0.00 2 62 0 2 0.00 2 63 0 0 0 64 0 0 0 65 0 4 0.00 4 66 0 1 0.00 1 67 0 2 0.00 2 68 0 1 0.00 1 69 0 1 0.00 1 70 0 0 0 71 0 0 0 72 0 2 0.00 2 73 0 2 0.00 2 74 0 2 0.00 2 75 0 2 0.00 2 76 0 2 0.00 2 77 0 0 0 78 0 1 0.00 1 79 0 0 0 80 0 0 0