CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 2 0 100.00 2 2 4 3 57.14 7 3 2 0 100.00 2 4 4 1 80.00 5 5 2 1 66.67 3 6 3 0 100.00 3 7 3 0 100.00 3 8 1 1 50.00 2 9 5 2 71.43 7 10 1 1 50.00 2 11 3 3 50.00 6 12 1 0 100.00 1 13 2 1 66.67 3 14 6 2 75.00 8 15 6 1 85.71 7 16 4 2 66.67 6 17 6 1 85.71 7 18 6 3 66.67 9 19 4 0 100.00 4 20 1 2 33.33 3 21 1 4 20.00 5 22 4 1 80.00 5 23 4 0 100.00 4 24 3 1 75.00 4 25 2 0 100.00 2 26 2 2 50.00 4 27 1 0 100.00 1 28 4 1 80.00 5 29 1 0 100.00 1 30 3 4 42.86 7 31 0 4 0.00 4 32 1 1 50.00 2 33 4 3 57.14 7 34 4 5 44.44 9 35 5 5 50.00 10 36 4 0 100.00 4 37 3 1 75.00 4 38 5 1 83.33 6 39 1 1 50.00 2 40 3 0 100.00 3 41 4 0 100.00 4 42 5 1 83.33 6 43 2 2 50.00 4 44 1 1 50.00 2 45 4 2 66.67 6 46 3 1 75.00 4 47 0 0 0 48 6 0 100.00 6 49 1 2 33.33 3 50 8 2 80.00 10 51 3 1 75.00 4 52 4 2 66.67 6 53 3 1 75.00 4 54 2 1 66.67 3 55 2 2 50.00 4 56 3 0 100.00 3 57 1 1 50.00 2 58 1 0 100.00 1 59 1 2 33.33 3 60 2 1 66.67 3 61 3 1 75.00 4 62 2 2 50.00 4 63 4 0 100.00 4 64 2 0 100.00 2 65 1 1 50.00 2 66 2 2 50.00 4 67 2 0 100.00 2 68 2 2 50.00 4 69 2 3 40.00 5 70 2 0 100.00 2 71 0 2 0.00 2 72 1 1 50.00 2 73 0 0 0 74 0 1 0.00 1 75 2 0 100.00 2 76 3 1 75.00 4 77 1 0 100.00 1 78 0 2 0.00 2 79 1 0 100.00 1 80 1 1 50.00 2 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 0 10 0.00 10 2 0 12 0.00 12 3 0 7 0.00 7 4 0 9 0.00 9 5 0 3 0.00 3 6 0 7 0.00 7 7 0 5 0.00 5 8 0 0 0 9 0 4 0.00 4 10 0 8 0.00 8 11 0 13 0.00 13 12 0 8 0.00 8 13 0 10 0.00 10 14 1 5 16.67 6 15 0 11 0.00 11 16 1 8 11.11 9 17 2 11 15.38 13 18 0 5 0.00 5 19 0 9 0.00 9 20 0 11 0.00 11 21 0 17 0.00 17 22 0 3 0.00 3 23 0 10 0.00 10 24 0 4 0.00 4 25 0 4 0.00 4 26 0 8 0.00 8 27 0 6 0.00 6 28 0 5 0.00 5 29 0 10 0.00 10 30 0 10 0.00 10 31 0 8 0.00 8 32 0 10 0.00 10 33 0 4 0.00 4 34 0 6 0.00 6 35 0 12 0.00 12 36 0 9 0.00 9 37 1 11 8.33 12 38 0 3 0.00 3 39 1 10 9.09 11 40 0 6 0.00 6 41 0 2 0.00 2 42 0 8 0.00 8 43 0 7 0.00 7 44 0 8 0.00 8 45 0 4 0.00 4 46 0 8 0.00 8 47 0 10 0.00 10 48 1 4 20.00 5 49 0 7 0.00 7 50 0 5 0.00 5 51 1 5 16.67 6 52 0 4 0.00 4 53 0 6 0.00 6 54 0 8 0.00 8 55 0 9 0.00 9 56 0 5 0.00 5 57 0 7 0.00 7 58 0 5 0.00 5 59 0 2 0.00 2 60 0 6 0.00 6 61 0 2 0.00 2 62 0 6 0.00 6 63 0 2 0.00 2 64 0 3 0.00 3 65 0 5 0.00 5 66 0 4 0.00 4 67 0 5 0.00 5 68 0 3 0.00 3 69 0 1 0.00 1 70 0 2 0.00 2 71 1 4 20.00 5 72 0 4 0.00 4 73 0 2 0.00 2 74 0 3 0.00 3 75 0 4 0.00 4 76 0 5 0.00 5 77 0 5 0.00 5 78 0 2 0.00 2 79 0 1 0.00 1 80 0 1 0.00 1 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 0 20 0.00 20 2 0 27 0.00 27 3 0 26 0.00 26 4 0 27 0.00 27 5 0 19 0.00 19 6 0 26 0.00 26 7 2 23 8.00 25 8 0 28 0.00 28 9 0 32 0.00 32 10 0 28 0.00 28 11 0 21 0.00 21 12 1 23 4.17 24 13 0 33 0.00 33 14 3 21 12.50 24 15 0 28 0.00 28 16 0 22 0.00 22 17 0 25 0.00 25 18 0 21 0.00 21 19 0 27 0.00 27 20 0 11 0.00 11 21 0 22 0.00 22 22 0 26 0.00 26 23 2 20 9.09 22 24 1 25 3.85 26 25 0 22 0.00 22 26 1 18 5.26 19 27 1 20 4.76 21 28 0 22 0.00 22 29 0 23 0.00 23 30 1 11 8.33 12 31 0 32 0.00 32 32 0 18 0.00 18 33 0 20 0.00 20 34 0 24 0.00 24 35 0 14 0.00 14 36 0 22 0.00 22 37 1 22 4.35 23 38 1 20 4.76 21 39 0 24 0.00 24 40 2 22 8.33 24 41 0 23 0.00 23 42 0 23 0.00 23 43 0 27 0.00 27 44 0 15 0.00 15 45 1 17 5.56 18 46 0 15 0.00 15 47 1 18 5.26 19 48 0 15 0.00 15 49 1 14 6.67 15 50 0 17 0.00 17 51 1 11 8.33 12 52 0 13 0.00 13 53 0 19 0.00 19 54 0 15 0.00 15 55 0 15 0.00 15 56 0 15 0.00 15 57 0 13 0.00 13 58 1 18 5.26 19 59 2 12 14.29 14 60 0 12 0.00 12 61 0 17 0.00 17 62 0 15 0.00 15 63 1 16 5.88 17 64 0 18 0.00 18 65 1 12 7.69 13 66 0 14 0.00 14 67 1 11 8.33 12 68 0 9 0.00 9 69 0 12 0.00 12 70 0 15 0.00 15 71 1 16 5.88 17 72 0 12 0.00 12 73 0 13 0.00 13 74 0 12 0.00 12 75 0 15 0.00 15 76 1 10 9.09 11 77 0 12 0.00 12 78 2 11 15.38 13 79 0 11 0.00 11 80 0 3 0.00 3 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 3 0 100.00 3 2 4 1 80.00 5 3 2 0 100.00 2 4 2 0 100.00 2 5 2 0 100.00 2 6 0 2 0.00 2 7 0 2 0.00 2 8 0 1 0.00 1 9 1 1 50.00 2 10 0 1 0.00 1 11 4 0 100.00 4 12 2 1 66.67 3 13 2 0 100.00 2 14 5 0 100.00 5 15 0 1 0.00 1 16 0 0 0 17 0 0 0 18 0 0 0 19 1 0 100.00 1 20 0 0 0 21 1 1 50.00 2 22 1 2 33.33 3 23 0 0 0 24 2 0 100.00 2 25 2 0 100.00 2 26 0 0 0 27 1 0 100.00 1 28 0 0 0 29 2 0 100.00 2 30 0 0 0 31 1 0 100.00 1 32 0 0 0 33 0 1 0.00 1 34 0 0 0 35 1 0 100.00 1 36 1 0 100.00 1 37 1 1 50.00 2 38 1 0 100.00 1 39 0 0 0 40 2 0 100.00 2 41 0 0 0 42 0 0 0 43 0 0 0 44 1 1 50.00 2 45 0 0 0 46 0 0 0 47 0 0 0 48 0 0 0 49 0 1 0.00 1 50 0 0 0 51 0 0 0 52 0 0 0 53 0 0 0 54 1 0 100.00 1 55 0 0 0 56 0 0 0 57 0 0 0 58 1 0 100.00 1 59 0 0 0 60 0 0 0 61 0 0 0 62 0 0 0 63 0 0 0 64 0 0 0 65 1 0 100.00 1 66 0 1 0.00 1 67 0 0 0 68 1 0 100.00 1 69 0 0 0 70 0 0 0 71 0 0 0 72 0 0 0 73 0 0 0 74 0 0 0 75 0 0 0 76 0 0 0 77 0 0 0 78 0 0 0 79 0 1 0.00 1 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 0 5 0.00 5 2 0 4 0.00 4 3 0 2 0.00 2 4 0 1 0.00 1 5 0 4 0.00 4 6 0 2 0.00 2 7 0 2 0.00 2 8 0 3 0.00 3 9 0 1 0.00 1 10 1 1 50.00 2 11 0 4 0.00 4 12 0 0 0 13 0 4 0.00 4 14 1 0 100.00 1 15 0 4 0.00 4 16 0 1 0.00 1 17 0 1 0.00 1 18 0 4 0.00 4 19 0 3 0.00 3 20 0 4 0.00 4 21 0 3 0.00 3 22 0 5 0.00 5 23 0 0 0 24 0 1 0.00 1 25 0 3 0.00 3 26 0 2 0.00 2 27 0 3 0.00 3 28 0 3 0.00 3 29 0 1 0.00 1 30 0 2 0.00 2 31 0 0 0 32 0 1 0.00 1 33 0 2 0.00 2 34 0 2 0.00 2 35 0 2 0.00 2 36 0 2 0.00 2 37 0 1 0.00 1 38 0 2 0.00 2 39 0 3 0.00 3 40 0 1 0.00 1 41 0 3 0.00 3 42 0 2 0.00 2 43 0 0 0 44 0 0 0 45 0 2 0.00 2 46 0 2 0.00 2 47 0 0 0 48 0 1 0.00 1 49 0 2 0.00 2 50 0 2 0.00 2 51 0 0 0 52 0 0 0 53 0 1 0.00 1 54 0 1 0.00 1 55 0 0 0 56 0 0 0 57 0 3 0.00 3 58 0 1 0.00 1 59 0 0 0 60 0 0 0 61 0 0 0 62 0 1 0.00 1 63 0 0 0 64 0 1 0.00 1 65 0 0 0 66 0 0 0 67 0 0 0 68 0 1 0.00 1 69 0 2 0.00 2 70 0 0 0 71 0 0 0 72 0 0 0 73 0 0 0 74 0 1 0.00 1 75 0 0 0 76 0 0 0 77 0 1 0.00 1 78 0 1 0.00 1 79 0 1 0.00 1 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 0 15 0.00 15 2 0 12 0.00 12 3 2 14 12.50 16 4 0 12 0.00 12 5 0 12 0.00 12 6 0 14 0.00 14 7 0 14 0.00 14 8 0 7 0.00 7 9 0 7 0.00 7 10 0 8 0.00 8 11 0 6 0.00 6 12 1 9 10.00 10 13 0 9 0.00 9 14 0 13 0.00 13 15 0 7 0.00 7 16 1 7 12.50 8 17 0 11 0.00 11 18 0 11 0.00 11 19 0 10 0.00 10 20 0 10 0.00 10 21 0 7 0.00 7 22 0 12 0.00 12 23 0 7 0.00 7 24 0 5 0.00 5 25 0 9 0.00 9 26 0 6 0.00 6 27 0 8 0.00 8 28 0 4 0.00 4 29 0 5 0.00 5 30 0 6 0.00 6 31 0 8 0.00 8 32 0 3 0.00 3 33 0 6 0.00 6 34 0 4 0.00 4 35 0 6 0.00 6 36 0 3 0.00 3 37 0 5 0.00 5 38 0 6 0.00 6 39 0 2 0.00 2 40 0 3 0.00 3 41 0 2 0.00 2 42 0 4 0.00 4 43 0 2 0.00 2 44 0 4 0.00 4 45 0 2 0.00 2 46 0 3 0.00 3 47 0 5 0.00 5 48 0 2 0.00 2 49 0 1 0.00 1 50 0 1 0.00 1 51 0 3 0.00 3 52 0 3 0.00 3 53 0 2 0.00 2 54 0 2 0.00 2 55 0 3 0.00 3 56 0 2 0.00 2 57 0 0 0 58 0 2 0.00 2 59 0 1 0.00 1 60 0 1 0.00 1 61 0 1 0.00 1 62 0 1 0.00 1 63 0 4 0.00 4 64 0 2 0.00 2 65 0 2 0.00 2 66 0 1 0.00 1 67 0 0 0 68 0 2 0.00 2 69 0 1 0.00 1 70 0 1 0.00 1 71 0 1 0.00 1 72 0 0 0 73 0 1 0.00 1 74 0 2 0.00 2 75 0 1 0.00 1 76 0 1 0.00 1 77 0 1 0.00 1 78 0 1 0.00 1 79 0 1 0.00 1