CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 5 1 83.33 6 2 5 2 71.43 7 3 4 0 100.00 4 4 2 1 66.67 3 5 3 0 100.00 3 6 5 1 83.33 6 7 6 2 75.00 8 8 3 2 60.00 5 9 7 0 100.00 7 10 2 1 66.67 3 11 5 0 100.00 5 12 4 3 57.14 7 13 4 1 80.00 5 14 3 0 100.00 3 15 4 0 100.00 4 16 5 1 83.33 6 17 3 0 100.00 3 18 5 2 71.43 7 19 2 2 50.00 4 20 4 2 66.67 6 21 6 0 100.00 6 22 2 0 100.00 2 23 4 2 66.67 6 24 8 1 88.89 9 25 6 1 85.71 7 26 6 1 85.71 7 27 5 2 71.43 7 28 4 0 100.00 4 29 5 1 83.33 6 30 2 2 50.00 4 31 3 2 60.00 5 32 2 0 100.00 2 33 3 1 75.00 4 34 8 1 88.89 9 35 2 1 66.67 3 36 4 2 66.67 6 37 6 1 85.71 7 38 7 0 100.00 7 39 3 3 50.00 6 40 5 0 100.00 5 41 8 2 80.00 10 42 6 0 100.00 6 43 6 1 85.71 7 44 5 1 83.33 6 45 4 0 100.00 4 46 2 0 100.00 2 47 3 1 75.00 4 48 7 0 100.00 7 49 3 1 75.00 4 50 3 1 75.00 4 51 7 1 87.50 8 52 7 0 100.00 7 53 2 2 50.00 4 54 5 1 83.33 6 55 3 2 60.00 5 56 5 1 83.33 6 57 3 0 100.00 3 58 4 0 100.00 4 59 3 2 60.00 5 60 2 0 100.00 2 61 2 1 66.67 3 62 1 0 100.00 1 63 2 1 66.67 3 64 6 0 100.00 6 65 1 0 100.00 1 66 6 3 66.67 9 67 3 0 100.00 3 68 3 1 75.00 4 69 4 2 66.67 6 70 1 0 100.00 1 71 3 1 75.00 4 72 1 0 100.00 1 73 2 0 100.00 2 74 2 0 100.00 2 75 2 1 66.67 3 76 5 0 100.00 5 77 3 2 60.00 5 78 0 2 0.00 2 79 0 0 0 80 1 2 33.33 3 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 0 5 0.00 5 2 0 8 0.00 8 3 0 4 0.00 4 4 1 6 14.29 7 5 0 12 0.00 12 6 0 5 0.00 5 7 0 7 0.00 7 8 0 13 0.00 13 9 0 12 0.00 12 10 0 8 0.00 8 11 0 10 0.00 10 12 0 7 0.00 7 13 0 4 0.00 4 14 1 9 10.00 10 15 0 10 0.00 10 16 1 11 8.33 12 17 1 7 12.50 8 18 0 12 0.00 12 19 0 9 0.00 9 20 0 8 0.00 8 21 0 12 0.00 12 22 1 10 9.09 11 23 0 11 0.00 11 24 0 15 0.00 15 25 0 5 0.00 5 26 0 6 0.00 6 27 0 12 0.00 12 28 0 12 0.00 12 29 0 7 0.00 7 30 0 9 0.00 9 31 0 8 0.00 8 32 0 12 0.00 12 33 0 5 0.00 5 34 0 10 0.00 10 35 1 7 12.50 8 36 0 12 0.00 12 37 0 11 0.00 11 38 0 12 0.00 12 39 0 3 0.00 3 40 0 10 0.00 10 41 0 11 0.00 11 42 0 5 0.00 5 43 0 7 0.00 7 44 0 6 0.00 6 45 0 10 0.00 10 46 0 6 0.00 6 47 0 5 0.00 5 48 1 8 11.11 9 49 0 9 0.00 9 50 0 10 0.00 10 51 0 8 0.00 8 52 0 3 0.00 3 53 1 6 14.29 7 54 0 7 0.00 7 55 0 8 0.00 8 56 0 4 0.00 4 57 0 5 0.00 5 58 0 6 0.00 6 59 0 7 0.00 7 60 0 4 0.00 4 61 1 7 12.50 8 62 0 3 0.00 3 63 0 7 0.00 7 64 0 6 0.00 6 65 0 2 0.00 2 66 0 2 0.00 2 67 0 7 0.00 7 68 0 5 0.00 5 69 0 8 0.00 8 70 0 10 0.00 10 71 0 5 0.00 5 72 0 8 0.00 8 73 0 2 0.00 2 74 0 7 0.00 7 75 0 4 0.00 4 76 0 2 0.00 2 77 0 9 0.00 9 78 0 4 0.00 4 79 0 4 0.00 4 80 0 1 0.00 1 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 4 28 12.50 32 2 1 36 2.70 37 3 1 33 2.94 34 4 1 29 3.33 30 5 0 27 0.00 27 6 0 37 0.00 37 7 1 27 3.57 28 8 1 37 2.63 38 9 1 25 3.85 26 10 0 32 0.00 32 11 3 32 8.57 35 12 1 28 3.45 29 13 1 34 2.86 35 14 0 28 0.00 28 15 0 25 0.00 25 16 1 25 3.85 26 17 0 23 0.00 23 18 0 30 0.00 30 19 0 22 0.00 22 20 0 20 0.00 20 21 0 30 0.00 30 22 0 20 0.00 20 23 0 25 0.00 25 24 0 21 0.00 21 25 0 32 0.00 32 26 0 26 0.00 26 27 0 28 0.00 28 28 1 27 3.57 28 29 1 22 4.35 23 30 0 21 0.00 21 31 0 19 0.00 19 32 0 19 0.00 19 33 0 20 0.00 20 34 1 22 4.35 23 35 0 25 0.00 25 36 0 23 0.00 23 37 2 20 9.09 22 38 1 25 3.85 26 39 0 24 0.00 24 40 1 22 4.35 23 41 1 31 3.12 32 42 0 29 0.00 29 43 0 21 0.00 21 44 1 23 4.17 24 45 1 23 4.17 24 46 0 13 0.00 13 47 0 26 0.00 26 48 0 25 0.00 25 49 0 19 0.00 19 50 0 18 0.00 18 51 0 18 0.00 18 52 0 21 0.00 21 53 0 16 0.00 16 54 0 23 0.00 23 55 0 17 0.00 17 56 0 16 0.00 16 57 1 18 5.26 19 58 0 24 0.00 24 59 2 24 7.69 26 60 0 18 0.00 18 61 0 18 0.00 18 62 0 19 0.00 19 63 1 29 3.33 30 64 1 21 4.55 22 65 0 15 0.00 15 66 0 18 0.00 18 67 0 16 0.00 16 68 0 19 0.00 19 69 0 13 0.00 13 70 1 11 8.33 12 71 0 13 0.00 13 72 0 14 0.00 14 73 0 16 0.00 16 74 1 13 7.14 14 75 0 12 0.00 12 76 0 13 0.00 13 77 0 18 0.00 18 78 0 11 0.00 11 79 0 10 0.00 10 80 0 4 0.00 4 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 2 1 66.67 3 2 0 0 0 3 1 1 50.00 2 4 1 1 50.00 2 5 0 0 0 6 7 0 100.00 7 7 1 2 33.33 3 8 3 1 75.00 4 9 2 0 100.00 2 10 2 0 100.00 2 11 0 1 0.00 1 12 2 0 100.00 2 13 1 1 50.00 2 14 2 0 100.00 2 15 2 1 66.67 3 16 3 0 100.00 3 17 2 1 66.67 3 18 0 0 0 19 0 0 0 20 0 1 0.00 1 21 1 0 100.00 1 22 0 0 0 23 0 0 0 24 0 0 0 25 1 3 25.00 4 26 0 0 0 27 0 0 0 28 1 0 100.00 1 29 1 0 100.00 1 30 3 1 75.00 4 31 0 0 0 32 0 0 0 33 1 0 100.00 1 34 1 1 50.00 2 35 0 0 0 36 0 2 0.00 2 37 2 0 100.00 2 38 0 0 0 39 0 0 0 40 0 0 0 41 0 0 0 42 2 0 100.00 2 43 0 0 0 44 2 0 100.00 2 45 0 0 0 46 0 0 0 47 0 0 0 48 1 1 50.00 2 49 1 0 100.00 1 50 1 1 50.00 2 51 0 0 0 52 1 0 100.00 1 53 1 0 100.00 1 54 0 0 0 55 0 0 0 56 1 0 100.00 1 57 0 0 0 58 1 0 100.00 1 59 1 0 100.00 1 60 0 0 0 61 0 0 0 62 0 0 0 63 0 0 0 64 0 0 0 65 1 0 100.00 1 66 1 0 100.00 1 67 0 0 0 68 1 1 50.00 2 69 0 0 0 70 0 0 0 71 1 0 100.00 1 72 0 0 0 73 0 1 0.00 1 74 1 0 100.00 1 75 1 0 100.00 1 76 0 0 0 77 1 0 100.00 1 78 0 2 0.00 2 79 0 0 0 80 0 0 0 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 0 8 0.00 8 2 0 6 0.00 6 3 0 1 0.00 1 4 0 1 0.00 1 5 0 4 0.00 4 6 0 1 0.00 1 7 0 6 0.00 6 8 0 2 0.00 2 9 0 3 0.00 3 10 0 2 0.00 2 11 0 0 0 12 1 4 20.00 5 13 0 2 0.00 2 14 0 2 0.00 2 15 1 1 50.00 2 16 0 4 0.00 4 17 0 2 0.00 2 18 0 2 0.00 2 19 1 2 33.33 3 20 0 2 0.00 2 21 0 3 0.00 3 22 0 5 0.00 5 23 0 4 0.00 4 24 0 3 0.00 3 25 0 2 0.00 2 26 0 2 0.00 2 27 0 2 0.00 2 28 0 1 0.00 1 29 0 2 0.00 2 30 0 1 0.00 1 31 0 2 0.00 2 32 0 1 0.00 1 33 0 0 0 34 0 2 0.00 2 35 0 3 0.00 3 36 0 3 0.00 3 37 0 1 0.00 1 38 0 2 0.00 2 39 0 1 0.00 1 40 1 1 50.00 2 41 0 1 0.00 1 42 0 0 0 43 0 2 0.00 2 44 0 1 0.00 1 45 0 1 0.00 1 46 0 2 0.00 2 47 1 2 33.33 3 48 0 0 0 49 0 1 0.00 1 50 0 1 0.00 1 51 0 0 0 52 0 2 0.00 2 53 0 0 0 54 0 0 0 55 0 2 0.00 2 56 0 1 0.00 1 57 0 1 0.00 1 58 0 2 0.00 2 59 0 0 0 60 0 1 0.00 1 61 0 0 0 62 0 2 0.00 2 63 0 0 0 64 0 0 0 65 0 1 0.00 1 66 0 1 0.00 1 67 0 0 0 68 0 0 0 69 0 2 0.00 2 70 0 2 0.00 2 71 0 1 0.00 1 72 0 1 0.00 1 73 0 0 0 74 0 0 0 75 0 0 0 76 0 0 0 77 0 1 0.00 1 78 0 1 0.00 1 79 0 1 0.00 1 80 0 0 0 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 0 22 0.00 22 2 0 12 0.00 12 3 0 15 0.00 15 4 0 20 0.00 20 5 0 8 0.00 8 6 2 8 20.00 10 7 0 15 0.00 15 8 1 10 9.09 11 9 0 11 0.00 11 10 0 8 0.00 8 11 1 21 4.55 22 12 0 13 0.00 13 13 0 11 0.00 11 14 0 9 0.00 9 15 0 9 0.00 9 16 0 12 0.00 12 17 0 7 0.00 7 18 0 10 0.00 10 19 0 9 0.00 9 20 0 5 0.00 5 21 0 6 0.00 6 22 0 8 0.00 8 23 0 8 0.00 8 24 0 9 0.00 9 25 1 5 16.67 6 26 0 10 0.00 10 27 1 5 16.67 6 28 0 4 0.00 4 29 0 2 0.00 2 30 0 6 0.00 6 31 0 6 0.00 6 32 0 10 0.00 10 33 0 8 0.00 8 34 0 6 0.00 6 35 0 7 0.00 7 36 0 6 0.00 6 37 0 3 0.00 3 38 0 6 0.00 6 39 0 7 0.00 7 40 0 9 0.00 9 41 0 6 0.00 6 42 0 4 0.00 4 43 0 4 0.00 4 44 0 4 0.00 4 45 0 7 0.00 7 46 0 6 0.00 6 47 0 8 0.00 8 48 0 4 0.00 4 49 0 3 0.00 3 50 0 5 0.00 5 51 0 4 0.00 4 52 0 3 0.00 3 53 0 4 0.00 4 54 0 3 0.00 3 55 0 4 0.00 4 56 0 4 0.00 4 57 0 3 0.00 3 58 0 3 0.00 3 59 0 5 0.00 5 60 0 4 0.00 4 61 0 4 0.00 4 62 0 5 0.00 5 63 0 5 0.00 5 64 0 4 0.00 4 65 1 3 25.00 4 66 0 4 0.00 4 67 0 3 0.00 3 68 0 4 0.00 4 69 0 2 0.00 2 70 0 2 0.00 2 71 0 3 0.00 3 72 0 3 0.00 3 73 0 3 0.00 3 74 0 0 0 75 0 2 0.00 2 76 0 2 0.00 2 77 0 1 0.00 1 78 0 0 0 79 0 2 0.00 2 80 0 3 0.00 3