CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 4 0 100.00 4 2 6 3 66.67 9 3 7 2 77.78 9 4 9 1 90.00 10 5 5 3 62.50 8 6 6 3 66.67 9 7 6 1 85.71 7 8 8 2 80.00 10 9 7 0 100.00 7 10 3 1 75.00 4 11 3 3 50.00 6 12 10 0 100.00 10 13 3 3 50.00 6 14 8 3 72.73 11 15 8 0 100.00 8 16 7 0 100.00 7 17 6 1 85.71 7 18 12 1 92.31 13 19 4 2 66.67 6 20 7 0 100.00 7 21 2 0 100.00 2 22 8 2 80.00 10 23 3 1 75.00 4 24 7 0 100.00 7 25 6 2 75.00 8 26 3 1 75.00 4 27 6 0 100.00 6 28 5 1 83.33 6 29 8 4 66.67 12 30 3 1 75.00 4 31 7 0 100.00 7 32 5 2 71.43 7 33 7 0 100.00 7 34 5 1 83.33 6 35 3 1 75.00 4 36 6 1 85.71 7 37 4 0 100.00 4 38 4 0 100.00 4 39 4 1 80.00 5 40 4 0 100.00 4 41 2 1 66.67 3 42 6 1 85.71 7 43 7 2 77.78 9 44 6 0 100.00 6 45 5 2 71.43 7 46 3 1 75.00 4 47 5 0 100.00 5 48 2 1 66.67 3 49 3 0 100.00 3 50 6 1 85.71 7 51 2 3 40.00 5 52 3 0 100.00 3 53 9 0 100.00 9 54 3 1 75.00 4 55 2 0 100.00 2 56 1 0 100.00 1 57 4 1 80.00 5 58 1 1 50.00 2 59 1 0 100.00 1 60 5 0 100.00 5 61 2 0 100.00 2 62 3 0 100.00 3 63 0 3 0.00 3 64 2 1 66.67 3 65 5 0 100.00 5 66 3 0 100.00 3 67 2 1 66.67 3 68 2 1 66.67 3 69 0 0 0 70 3 0 100.00 3 71 2 0 100.00 2 72 5 1 83.33 6 73 2 0 100.00 2 74 4 0 100.00 4 75 5 0 100.00 5 76 1 0 100.00 1 77 3 0 100.00 3 78 3 0 100.00 3 79 1 0 100.00 1 80 1 0 100.00 1 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 1 14 6.67 15 2 0 4 0.00 4 3 0 13 0.00 13 4 0 10 0.00 10 5 0 6 0.00 6 6 0 9 0.00 9 7 0 15 0.00 15 8 0 12 0.00 12 9 0 11 0.00 11 10 0 10 0.00 10 11 0 4 0.00 4 12 0 7 0.00 7 13 0 15 0.00 15 14 0 10 0.00 10 15 0 13 0.00 13 16 0 7 0.00 7 17 0 10 0.00 10 18 0 10 0.00 10 19 0 14 0.00 14 20 0 5 0.00 5 21 0 10 0.00 10 22 0 8 0.00 8 23 0 9 0.00 9 24 0 10 0.00 10 25 0 9 0.00 9 26 0 11 0.00 11 27 0 12 0.00 12 28 0 12 0.00 12 29 0 9 0.00 9 30 0 11 0.00 11 31 0 13 0.00 13 32 0 10 0.00 10 33 0 6 0.00 6 34 0 10 0.00 10 35 0 12 0.00 12 36 0 12 0.00 12 37 0 6 0.00 6 38 0 7 0.00 7 39 0 6 0.00 6 40 0 6 0.00 6 41 0 10 0.00 10 42 0 8 0.00 8 43 1 9 10.00 10 44 0 7 0.00 7 45 0 6 0.00 6 46 0 12 0.00 12 47 0 10 0.00 10 48 0 7 0.00 7 49 0 11 0.00 11 50 0 5 0.00 5 51 0 9 0.00 9 52 0 8 0.00 8 53 0 4 0.00 4 54 0 7 0.00 7 55 0 4 0.00 4 56 0 10 0.00 10 57 0 8 0.00 8 58 0 4 0.00 4 59 0 2 0.00 2 60 0 9 0.00 9 61 1 5 16.67 6 62 0 6 0.00 6 63 0 8 0.00 8 64 0 3 0.00 3 65 0 7 0.00 7 66 0 5 0.00 5 67 0 6 0.00 6 68 0 8 0.00 8 69 0 5 0.00 5 70 0 4 0.00 4 71 1 2 33.33 3 72 0 11 0.00 11 73 0 2 0.00 2 74 0 6 0.00 6 75 0 3 0.00 3 76 0 3 0.00 3 77 0 2 0.00 2 78 0 7 0.00 7 79 0 5 0.00 5 80 0 3 0.00 3 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 1 26 3.70 27 2 0 27 0.00 27 3 0 27 0.00 27 4 2 28 6.67 30 5 1 23 4.17 24 6 0 27 0.00 27 7 1 27 3.57 28 8 0 19 0.00 19 9 0 24 0.00 24 10 0 24 0.00 24 11 0 31 0.00 31 12 0 38 0.00 38 13 0 21 0.00 21 14 0 27 0.00 27 15 0 22 0.00 22 16 0 21 0.00 21 17 0 24 0.00 24 18 1 25 3.85 26 19 0 28 0.00 28 20 0 28 0.00 28 21 0 35 0.00 35 22 3 20 13.04 23 23 0 31 0.00 31 24 0 28 0.00 28 25 0 27 0.00 27 26 0 29 0.00 29 27 1 31 3.12 32 28 1 28 3.45 29 29 0 24 0.00 24 30 0 28 0.00 28 31 0 30 0.00 30 32 0 18 0.00 18 33 0 31 0.00 31 34 1 19 5.00 20 35 0 20 0.00 20 36 0 27 0.00 27 37 0 23 0.00 23 38 0 24 0.00 24 39 0 31 0.00 31 40 0 32 0.00 32 41 1 34 2.86 35 42 0 24 0.00 24 43 1 19 5.00 20 44 2 10 16.67 12 45 0 26 0.00 26 46 0 20 0.00 20 47 1 20 4.76 21 48 0 22 0.00 22 49 0 18 0.00 18 50 1 21 4.55 22 51 2 20 9.09 22 52 0 16 0.00 16 53 0 20 0.00 20 54 0 13 0.00 13 55 0 15 0.00 15 56 0 18 0.00 18 57 0 18 0.00 18 58 0 24 0.00 24 59 0 16 0.00 16 60 0 22 0.00 22 61 0 16 0.00 16 62 1 9 10.00 10 63 1 21 4.55 22 64 1 10 9.09 11 65 0 11 0.00 11 66 0 13 0.00 13 67 0 15 0.00 15 68 1 16 5.88 17 69 0 19 0.00 19 70 0 10 0.00 10 71 0 11 0.00 11 72 0 16 0.00 16 73 0 15 0.00 15 74 0 11 0.00 11 75 0 16 0.00 16 76 0 17 0.00 17 77 0 9 0.00 9 78 0 14 0.00 14 79 0 8 0.00 8 80 0 4 0.00 4 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 1 2 33.33 3 2 3 1 75.00 4 3 4 0 100.00 4 4 2 1 66.67 3 5 3 0 100.00 3 6 3 0 100.00 3 7 1 0 100.00 1 8 3 0 100.00 3 9 1 0 100.00 1 10 2 0 100.00 2 11 0 2 0.00 2 12 3 0 100.00 3 13 0 0 0 14 2 0 100.00 2 15 0 0 0 16 4 1 80.00 5 17 1 0 100.00 1 18 2 0 100.00 2 19 0 1 0.00 1 20 1 0 100.00 1 21 0 1 0.00 1 22 1 1 50.00 2 23 1 0 100.00 1 24 0 0 0 25 2 1 66.67 3 26 1 0 100.00 1 27 0 0 0 28 1 0 100.00 1 29 0 0 0 30 1 0 100.00 1 31 0 0 0 32 2 0 100.00 2 33 3 0 100.00 3 34 2 0 100.00 2 35 0 0 0 36 1 0 100.00 1 37 1 0 100.00 1 38 3 0 100.00 3 39 1 0 100.00 1 40 0 0 0 41 0 0 0 42 0 0 0 43 0 0 0 44 0 1 0.00 1 45 0 0 0 46 0 0 0 47 1 0 100.00 1 48 0 0 0 49 0 1 0.00 1 50 1 0 100.00 1 51 0 0 0 52 0 0 0 53 0 0 0 54 1 0 100.00 1 55 2 0 100.00 2 56 3 0 100.00 3 57 0 0 0 58 1 0 100.00 1 59 0 0 0 60 0 0 0 61 0 0 0 62 0 0 0 63 0 0 0 64 0 0 0 65 0 0 0 66 0 0 0 67 1 0 100.00 1 68 0 0 0 69 1 0 100.00 1 70 0 0 0 71 0 0 0 72 0 0 0 73 0 0 0 74 1 0 100.00 1 75 0 0 0 76 0 0 0 77 1 0 100.00 1 78 0 0 0 79 0 1 0.00 1 80 0 0 0 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 0 7 0.00 7 2 0 7 0.00 7 3 0 4 0.00 4 4 0 4 0.00 4 5 0 6 0.00 6 6 0 7 0.00 7 7 0 2 0.00 2 8 0 2 0.00 2 9 0 5 0.00 5 10 0 2 0.00 2 11 0 2 0.00 2 12 0 5 0.00 5 13 0 5 0.00 5 14 0 3 0.00 3 15 0 5 0.00 5 16 0 2 0.00 2 17 1 3 25.00 4 18 0 5 0.00 5 19 0 0 0 20 0 2 0.00 2 21 0 3 0.00 3 22 0 0 0 23 0 3 0.00 3 24 0 0 0 25 0 0 0 26 0 6 0.00 6 27 0 2 0.00 2 28 0 0 0 29 0 3 0.00 3 30 0 3 0.00 3 31 0 3 0.00 3 32 0 3 0.00 3 33 0 2 0.00 2 34 0 0 0 35 0 1 0.00 1 36 0 7 0.00 7 37 0 0 0 38 0 0 0 39 0 0 0 40 0 2 0.00 2 41 0 0 0 42 0 1 0.00 1 43 0 0 0 44 0 2 0.00 2 45 0 0 0 46 0 2 0.00 2 47 0 3 0.00 3 48 0 2 0.00 2 49 0 1 0.00 1 50 0 2 0.00 2 51 0 1 0.00 1 52 0 1 0.00 1 53 0 2 0.00 2 54 0 2 0.00 2 55 0 1 0.00 1 56 0 1 0.00 1 57 0 1 0.00 1 58 0 3 0.00 3 59 0 1 0.00 1 60 0 1 0.00 1 61 0 0 0 62 0 2 0.00 2 63 0 1 0.00 1 64 0 1 0.00 1 65 0 0 0 66 0 0 0 67 0 1 0.00 1 68 0 1 0.00 1 69 0 0 0 70 0 0 0 71 0 0 0 72 0 0 0 73 0 1 0.00 1 74 0 0 0 75 0 1 0.00 1 76 0 1 0.00 1 77 0 1 0.00 1 78 0 1 0.00 1 79 0 0 0 80 0 1 0.00 1 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 0 27 0.00 27 2 0 16 0.00 16 3 0 13 0.00 13 4 0 3 0.00 3 5 0 4 0.00 4 6 0 12 0.00 12 7 0 9 0.00 9 8 0 10 0.00 10 9 0 5 0.00 5 10 1 11 8.33 12 11 0 11 0.00 11 12 0 7 0.00 7 13 0 10 0.00 10 14 0 9 0.00 9 15 0 7 0.00 7 16 1 5 16.67 6 17 0 9 0.00 9 18 0 5 0.00 5 19 0 9 0.00 9 20 0 7 0.00 7 21 0 4 0.00 4 22 0 11 0.00 11 23 0 6 0.00 6 24 0 7 0.00 7 25 0 7 0.00 7 26 0 13 0.00 13 27 0 6 0.00 6 28 0 7 0.00 7 29 0 6 0.00 6 30 0 5 0.00 5 31 0 10 0.00 10 32 0 5 0.00 5 33 0 4 0.00 4 34 0 5 0.00 5 35 0 4 0.00 4 36 0 5 0.00 5 37 0 4 0.00 4 38 0 4 0.00 4 39 0 9 0.00 9 40 0 11 0.00 11 41 0 2 0.00 2 42 0 8 0.00 8 43 0 4 0.00 4 44 0 3 0.00 3 45 0 9 0.00 9 46 0 6 0.00 6 47 0 0 0 48 0 5 0.00 5 49 0 3 0.00 3 50 0 8 0.00 8 51 0 3 0.00 3 52 0 8 0.00 8 53 0 4 0.00 4 54 0 3 0.00 3 55 1 5 16.67 6 56 0 5 0.00 5 57 0 3 0.00 3 58 0 0 0 59 0 1 0.00 1 60 0 1 0.00 1 61 0 2 0.00 2 62 0 2 0.00 2 63 0 5 0.00 5 64 0 5 0.00 5 65 0 5 0.00 5 66 0 2 0.00 2 67 0 2 0.00 2 68 0 0 0 69 0 2 0.00 2 70 0 1 0.00 1 71 0 2 0.00 2 72 0 1 0.00 1 73 0 3 0.00 3 74 0 1 0.00 1 75 0 0 0 76 0 2 0.00 2 77 0 0 0 78 0 1 0.00 1 79 0 1 0.00 1 80 0 2 0.00 2