CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 1 2 33.33 3 2 6 1 85.71 7 3 3 1 75.00 4 4 3 1 75.00 4 5 9 1 90.00 10 6 4 2 66.67 6 7 6 1 85.71 7 8 2 1 66.67 3 9 1 0 100.00 1 10 2 2 50.00 4 11 0 4 0.00 4 12 6 3 66.67 9 13 4 0 100.00 4 14 5 0 100.00 5 15 4 3 57.14 7 16 3 2 60.00 5 17 2 2 50.00 4 18 3 4 42.86 7 19 6 3 66.67 9 20 6 1 85.71 7 21 5 0 100.00 5 22 4 0 100.00 4 23 1 0 100.00 1 24 6 2 75.00 8 25 7 1 87.50 8 26 3 4 42.86 7 27 3 0 100.00 3 28 3 2 60.00 5 29 6 2 75.00 8 30 4 4 50.00 8 31 5 1 83.33 6 32 3 1 75.00 4 33 5 0 100.00 5 34 7 0 100.00 7 35 2 0 100.00 2 36 5 0 100.00 5 37 2 1 66.67 3 38 7 1 87.50 8 39 4 4 50.00 8 40 0 1 0.00 1 41 7 1 87.50 8 42 3 1 75.00 4 43 4 1 80.00 5 44 8 2 80.00 10 45 1 3 25.00 4 46 1 0 100.00 1 47 7 0 100.00 7 48 4 2 66.67 6 49 3 0 100.00 3 50 3 1 75.00 4 51 3 1 75.00 4 52 0 1 0.00 1 53 3 0 100.00 3 54 2 1 66.67 3 55 3 0 100.00 3 56 1 0 100.00 1 57 3 0 100.00 3 58 2 1 66.67 3 59 3 1 75.00 4 60 1 1 50.00 2 61 4 0 100.00 4 62 0 1 0.00 1 63 3 0 100.00 3 64 1 0 100.00 1 65 2 0 100.00 2 66 0 0 0 67 2 1 66.67 3 68 4 0 100.00 4 69 2 0 100.00 2 70 1 0 100.00 1 71 0 1 0.00 1 72 1 1 50.00 2 73 1 0 100.00 1 74 1 0 100.00 1 75 1 1 50.00 2 76 3 1 75.00 4 77 3 0 100.00 3 78 1 0 100.00 1 79 1 1 50.00 2 80 0 1 0.00 1 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 0 12 0.00 12 2 0 6 0.00 6 3 1 7 12.50 8 4 0 9 0.00 9 5 1 14 6.67 15 6 0 9 0.00 9 7 0 8 0.00 8 8 1 5 16.67 6 9 0 10 0.00 10 10 0 9 0.00 9 11 0 11 0.00 11 12 0 8 0.00 8 13 0 8 0.00 8 14 1 9 10.00 10 15 0 9 0.00 9 16 0 4 0.00 4 17 1 6 14.29 7 18 0 11 0.00 11 19 0 13 0.00 13 20 0 4 0.00 4 21 0 10 0.00 10 22 0 6 0.00 6 23 0 11 0.00 11 24 1 12 7.69 13 25 0 6 0.00 6 26 0 6 0.00 6 27 0 9 0.00 9 28 0 8 0.00 8 29 0 8 0.00 8 30 0 9 0.00 9 31 0 8 0.00 8 32 1 13 7.14 14 33 0 10 0.00 10 34 0 4 0.00 4 35 0 9 0.00 9 36 0 7 0.00 7 37 0 6 0.00 6 38 0 9 0.00 9 39 0 6 0.00 6 40 0 6 0.00 6 41 0 9 0.00 9 42 0 6 0.00 6 43 0 2 0.00 2 44 0 6 0.00 6 45 0 9 0.00 9 46 0 5 0.00 5 47 0 9 0.00 9 48 0 4 0.00 4 49 1 7 12.50 8 50 0 5 0.00 5 51 0 11 0.00 11 52 0 6 0.00 6 53 1 3 25.00 4 54 0 7 0.00 7 55 0 9 0.00 9 56 0 5 0.00 5 57 0 2 0.00 2 58 0 6 0.00 6 59 0 4 0.00 4 60 0 7 0.00 7 61 0 8 0.00 8 62 0 10 0.00 10 63 2 5 28.57 7 64 0 3 0.00 3 65 0 5 0.00 5 66 0 5 0.00 5 67 0 4 0.00 4 68 0 5 0.00 5 69 0 5 0.00 5 70 0 3 0.00 3 71 0 6 0.00 6 72 0 3 0.00 3 73 0 2 0.00 2 74 0 3 0.00 3 75 0 4 0.00 4 76 0 5 0.00 5 77 0 1 0.00 1 78 0 4 0.00 4 79 0 1 0.00 1 80 0 1 0.00 1 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 0 19 0.00 19 2 0 19 0.00 19 3 0 31 0.00 31 4 0 22 0.00 22 5 0 15 0.00 15 6 0 17 0.00 17 7 0 21 0.00 21 8 0 24 0.00 24 9 0 25 0.00 25 10 0 28 0.00 28 11 1 32 3.03 33 12 0 24 0.00 24 13 1 20 4.76 21 14 1 22 4.35 23 15 1 27 3.57 28 16 2 27 6.90 29 17 0 32 0.00 32 18 1 29 3.33 30 19 0 26 0.00 26 20 0 22 0.00 22 21 0 22 0.00 22 22 0 32 0.00 32 23 0 23 0.00 23 24 0 31 0.00 31 25 0 20 0.00 20 26 1 16 5.88 17 27 0 26 0.00 26 28 0 35 0.00 35 29 0 18 0.00 18 30 0 20 0.00 20 31 0 27 0.00 27 32 0 27 0.00 27 33 0 30 0.00 30 34 0 20 0.00 20 35 0 19 0.00 19 36 0 22 0.00 22 37 1 25 3.85 26 38 0 21 0.00 21 39 0 19 0.00 19 40 0 20 0.00 20 41 0 25 0.00 25 42 0 19 0.00 19 43 3 26 10.34 29 44 0 12 0.00 12 45 0 23 0.00 23 46 1 26 3.70 27 47 0 22 0.00 22 48 0 21 0.00 21 49 1 19 5.00 20 50 0 18 0.00 18 51 0 22 0.00 22 52 0 18 0.00 18 53 1 23 4.17 24 54 0 22 0.00 22 55 0 27 0.00 27 56 0 23 0.00 23 57 0 17 0.00 17 58 2 11 15.38 13 59 1 16 5.88 17 60 3 19 13.64 22 61 0 17 0.00 17 62 0 19 0.00 19 63 0 19 0.00 19 64 0 16 0.00 16 65 1 13 7.14 14 66 0 11 0.00 11 67 0 10 0.00 10 68 0 7 0.00 7 69 0 12 0.00 12 70 0 11 0.00 11 71 0 14 0.00 14 72 0 16 0.00 16 73 0 8 0.00 8 74 1 13 7.14 14 75 0 11 0.00 11 76 0 9 0.00 9 77 0 12 0.00 12 78 0 11 0.00 11 79 0 11 0.00 11 80 0 5 0.00 5 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 4 0 100.00 4 2 3 1 75.00 4 3 5 3 62.50 8 4 2 1 66.67 3 5 2 0 100.00 2 6 1 0 100.00 1 7 1 1 50.00 2 8 0 1 0.00 1 9 1 0 100.00 1 10 1 1 50.00 2 11 0 0 0 12 1 1 50.00 2 13 0 0 0 14 2 0 100.00 2 15 0 0 0 16 1 1 50.00 2 17 2 0 100.00 2 18 1 0 100.00 1 19 1 0 100.00 1 20 0 0 0 21 0 0 0 22 2 0 100.00 2 23 2 0 100.00 2 24 0 1 0.00 1 25 2 0 100.00 2 26 2 0 100.00 2 27 2 0 100.00 2 28 3 1 75.00 4 29 1 1 50.00 2 30 0 0 0 31 0 0 0 32 0 1 0.00 1 33 1 0 100.00 1 34 1 0 100.00 1 35 0 1 0.00 1 36 0 0 0 37 0 1 0.00 1 38 0 1 0.00 1 39 0 0 0 40 2 1 66.67 3 41 1 0 100.00 1 42 0 0 0 43 0 0 0 44 0 0 0 45 0 1 0.00 1 46 0 1 0.00 1 47 0 0 0 48 1 1 50.00 2 49 1 0 100.00 1 50 1 0 100.00 1 51 0 0 0 52 0 0 0 53 1 0 100.00 1 54 0 1 0.00 1 55 0 0 0 56 0 0 0 57 0 0 0 58 1 0 100.00 1 59 0 0 0 60 0 0 0 61 0 1 0.00 1 62 0 0 0 63 0 0 0 64 0 0 0 65 0 1 0.00 1 66 1 0 100.00 1 67 0 0 0 68 1 0 100.00 1 69 0 0 0 70 0 0 0 71 0 0 0 72 0 1 0.00 1 73 0 0 0 74 1 0 100.00 1 75 0 0 0 76 0 0 0 77 1 0 100.00 1 78 0 0 0 79 0 0 0 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 0 6 0.00 6 2 0 3 0.00 3 3 1 2 33.33 3 4 0 5 0.00 5 5 0 3 0.00 3 6 0 1 0.00 1 7 0 2 0.00 2 8 0 2 0.00 2 9 0 7 0.00 7 10 1 4 20.00 5 11 0 3 0.00 3 12 0 4 0.00 4 13 0 5 0.00 5 14 0 3 0.00 3 15 0 3 0.00 3 16 1 1 50.00 2 17 0 1 0.00 1 18 0 2 0.00 2 19 0 2 0.00 2 20 0 2 0.00 2 21 0 1 0.00 1 22 0 4 0.00 4 23 0 1 0.00 1 24 0 5 0.00 5 25 0 0 0 26 0 2 0.00 2 27 0 4 0.00 4 28 0 0 0 29 0 2 0.00 2 30 0 1 0.00 1 31 0 0 0 32 0 0 0 33 0 2 0.00 2 34 0 1 0.00 1 35 0 0 0 36 0 1 0.00 1 37 0 1 0.00 1 38 0 1 0.00 1 39 0 3 0.00 3 40 0 1 0.00 1 41 0 0 0 42 0 0 0 43 0 0 0 44 0 1 0.00 1 45 0 1 0.00 1 46 0 0 0 47 0 1 0.00 1 48 0 2 0.00 2 49 0 1 0.00 1 50 0 1 0.00 1 51 0 0 0 52 0 1 0.00 1 53 0 0 0 54 0 2 0.00 2 55 0 0 0 56 0 1 0.00 1 57 0 0 0 58 0 1 0.00 1 59 0 1 0.00 1 60 0 0 0 61 0 0 0 62 0 0 0 63 0 1 0.00 1 64 0 0 0 65 0 0 0 66 0 0 0 67 0 1 0.00 1 68 0 0 0 69 0 0 0 70 0 0 0 71 0 0 0 72 0 0 0 73 0 1 0.00 1 74 0 0 0 75 0 0 0 76 0 1 0.00 1 77 0 1 0.00 1 78 0 0 0 79 0 1 0.00 1 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 0 12 0.00 12 2 0 12 0.00 12 3 0 9 0.00 9 4 0 7 0.00 7 5 0 7 0.00 7 6 0 8 0.00 8 7 0 7 0.00 7 8 0 5 0.00 5 9 0 5 0.00 5 10 0 11 0.00 11 11 0 9 0.00 9 12 0 7 0.00 7 13 0 8 0.00 8 14 1 9 10.00 10 15 1 6 14.29 7 16 0 8 0.00 8 17 0 12 0.00 12 18 0 9 0.00 9 19 0 6 0.00 6 20 0 3 0.00 3 21 0 5 0.00 5 22 0 3 0.00 3 23 0 5 0.00 5 24 0 12 0.00 12 25 0 8 0.00 8 26 0 5 0.00 5 27 0 9 0.00 9 28 0 6 0.00 6 29 0 2 0.00 2 30 0 5 0.00 5 31 0 7 0.00 7 32 0 7 0.00 7 33 0 4 0.00 4 34 0 6 0.00 6 35 0 5 0.00 5 36 0 5 0.00 5 37 0 5 0.00 5 38 0 4 0.00 4 39 0 2 0.00 2 40 0 3 0.00 3 41 0 4 0.00 4 42 0 4 0.00 4 43 0 4 0.00 4 44 1 3 25.00 4 45 0 4 0.00 4 46 0 2 0.00 2 47 0 3 0.00 3 48 0 3 0.00 3 49 0 1 0.00 1 50 0 3 0.00 3 51 0 1 0.00 1 52 0 4 0.00 4 53 0 1 0.00 1 54 0 0 0 55 0 1 0.00 1 56 0 1 0.00 1 57 0 1 0.00 1 58 0 2 0.00 2 59 0 1 0.00 1 60 0 2 0.00 2 61 0 3 0.00 3 62 0 0 0 63 0 3 0.00 3 64 0 3 0.00 3 65 0 2 0.00 2 66 0 1 0.00 1 67 0 2 0.00 2 68 0 2 0.00 2 69 0 1 0.00 1 70 0 3 0.00 3 71 0 1 0.00 1 72 0 1 0.00 1 73 0 0 0 74 0 1 0.00 1 75 0 0 0 76 0 1 0.00 1 77 0 1 0.00 1 78 0 1 0.00 1 79 1 0 100.00 1