CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 0 0 0 2 9 1 90.00 10 3 7 0 100.00 7 4 3 0 100.00 3 5 4 0 100.00 4 6 12 0 100.00 12 7 3 1 75.00 4 8 4 2 66.67 6 9 6 0 100.00 6 10 5 4 55.56 9 11 3 2 60.00 5 12 2 1 66.67 3 13 5 1 83.33 6 14 6 3 66.67 9 15 4 2 66.67 6 16 6 1 85.71 7 17 2 0 100.00 2 18 4 2 66.67 6 19 2 0 100.00 2 20 1 2 33.33 3 21 2 2 50.00 4 22 3 1 75.00 4 23 3 3 50.00 6 24 8 2 80.00 10 25 7 2 77.78 9 26 3 0 100.00 3 27 5 1 83.33 6 28 4 2 66.67 6 29 3 0 100.00 3 30 7 1 87.50 8 31 3 2 60.00 5 32 2 2 50.00 4 33 6 0 100.00 6 34 4 0 100.00 4 35 2 1 66.67 3 36 6 1 85.71 7 37 7 1 87.50 8 38 5 0 100.00 5 39 8 0 100.00 8 40 3 2 60.00 5 41 2 1 66.67 3 42 6 1 85.71 7 43 2 1 66.67 3 44 3 1 75.00 4 45 7 0 100.00 7 46 5 1 83.33 6 47 4 2 66.67 6 48 5 1 83.33 6 49 0 0 0 50 3 1 75.00 4 51 2 0 100.00 2 52 6 2 75.00 8 53 3 0 100.00 3 54 1 1 50.00 2 55 5 0 100.00 5 56 5 2 71.43 7 57 0 0 0 58 1 0 100.00 1 59 5 0 100.00 5 60 2 0 100.00 2 61 4 0 100.00 4 62 2 0 100.00 2 63 3 1 75.00 4 64 3 0 100.00 3 65 6 0 100.00 6 66 4 2 66.67 6 67 2 2 50.00 4 68 1 0 100.00 1 69 6 3 66.67 9 70 0 1 0.00 1 71 3 2 60.00 5 72 3 0 100.00 3 73 5 2 71.43 7 74 3 0 100.00 3 75 2 1 66.67 3 76 6 1 85.71 7 77 5 1 83.33 6 78 2 1 66.67 3 79 2 0 100.00 2 80 1 0 100.00 1 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 0 5 0.00 5 2 0 13 0.00 13 3 0 11 0.00 11 4 0 6 0.00 6 5 0 7 0.00 7 6 0 6 0.00 6 7 0 10 0.00 10 8 0 10 0.00 10 9 0 11 0.00 11 10 0 6 0.00 6 11 0 5 0.00 5 12 0 9 0.00 9 13 1 8 11.11 9 14 0 9 0.00 9 15 0 11 0.00 11 16 0 8 0.00 8 17 0 5 0.00 5 18 1 10 9.09 11 19 0 3 0.00 3 20 0 5 0.00 5 21 0 11 0.00 11 22 0 9 0.00 9 23 0 8 0.00 8 24 0 8 0.00 8 25 0 6 0.00 6 26 0 7 0.00 7 27 0 9 0.00 9 28 0 7 0.00 7 29 0 8 0.00 8 30 0 7 0.00 7 31 0 8 0.00 8 32 0 5 0.00 5 33 0 11 0.00 11 34 0 12 0.00 12 35 1 7 12.50 8 36 0 9 0.00 9 37 0 10 0.00 10 38 0 8 0.00 8 39 0 11 0.00 11 40 0 13 0.00 13 41 0 8 0.00 8 42 0 8 0.00 8 43 0 8 0.00 8 44 1 8 11.11 9 45 0 5 0.00 5 46 0 7 0.00 7 47 1 11 8.33 12 48 0 7 0.00 7 49 1 13 7.14 14 50 0 8 0.00 8 51 1 12 7.69 13 52 0 4 0.00 4 53 0 8 0.00 8 54 1 14 6.67 15 55 0 6 0.00 6 56 0 6 0.00 6 57 0 6 0.00 6 58 0 7 0.00 7 59 0 3 0.00 3 60 1 12 7.69 13 61 0 4 0.00 4 62 0 2 0.00 2 63 0 7 0.00 7 64 0 5 0.00 5 65 0 8 0.00 8 66 0 10 0.00 10 67 0 5 0.00 5 68 0 4 0.00 4 69 0 8 0.00 8 70 0 9 0.00 9 71 0 6 0.00 6 72 0 3 0.00 3 73 1 5 16.67 6 74 0 5 0.00 5 75 0 2 0.00 2 76 0 8 0.00 8 77 0 2 0.00 2 78 0 2 0.00 2 79 0 2 0.00 2 80 0 1 0.00 1 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 0 27 0.00 27 2 3 18 14.29 21 3 1 30 3.23 31 4 1 26 3.70 27 5 0 27 0.00 27 6 0 31 0.00 31 7 2 19 9.52 21 8 0 22 0.00 22 9 0 23 0.00 23 10 0 32 0.00 32 11 1 28 3.45 29 12 0 28 0.00 28 13 0 19 0.00 19 14 0 23 0.00 23 15 0 22 0.00 22 16 0 23 0.00 23 17 2 30 6.25 32 18 0 24 0.00 24 19 0 23 0.00 23 20 0 28 0.00 28 21 0 20 0.00 20 22 0 24 0.00 24 23 0 27 0.00 27 24 0 31 0.00 31 25 0 17 0.00 17 26 0 31 0.00 31 27 1 23 4.17 24 28 0 18 0.00 18 29 1 27 3.57 28 30 0 22 0.00 22 31 0 21 0.00 21 32 0 23 0.00 23 33 0 20 0.00 20 34 0 18 0.00 18 35 0 18 0.00 18 36 0 26 0.00 26 37 2 20 9.09 22 38 1 24 4.00 25 39 0 26 0.00 26 40 0 16 0.00 16 41 0 22 0.00 22 42 0 19 0.00 19 43 0 17 0.00 17 44 1 22 4.35 23 45 0 23 0.00 23 46 0 36 0.00 36 47 0 21 0.00 21 48 0 21 0.00 21 49 0 23 0.00 23 50 0 24 0.00 24 51 0 13 0.00 13 52 0 25 0.00 25 53 0 14 0.00 14 54 1 23 4.17 24 55 0 15 0.00 15 56 0 26 0.00 26 57 0 14 0.00 14 58 0 15 0.00 15 59 0 20 0.00 20 60 0 17 0.00 17 61 0 21 0.00 21 62 0 19 0.00 19 63 0 12 0.00 12 64 0 19 0.00 19 65 0 18 0.00 18 66 0 9 0.00 9 67 0 13 0.00 13 68 0 13 0.00 13 69 0 16 0.00 16 70 0 18 0.00 18 71 0 20 0.00 20 72 0 12 0.00 12 73 1 9 10.00 10 74 1 13 7.14 14 75 0 15 0.00 15 76 0 8 0.00 8 77 0 11 0.00 11 78 0 15 0.00 15 79 1 12 7.69 13 80 0 6 0.00 6 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 5 0 100.00 5 2 1 1 50.00 2 3 2 0 100.00 2 4 5 0 100.00 5 5 2 0 100.00 2 6 2 0 100.00 2 7 1 2 33.33 3 8 2 0 100.00 2 9 3 0 100.00 3 10 2 0 100.00 2 11 3 0 100.00 3 12 8 0 100.00 8 13 2 0 100.00 2 14 3 1 75.00 4 15 0 0 0 16 2 0 100.00 2 17 3 0 100.00 3 18 1 2 33.33 3 19 0 0 0 20 4 0 100.00 4 21 1 3 25.00 4 22 2 1 66.67 3 23 0 0 0 24 2 0 100.00 2 25 1 0 100.00 1 26 2 1 66.67 3 27 0 0 0 28 2 0 100.00 2 29 1 0 100.00 1 30 1 0 100.00 1 31 1 0 100.00 1 32 0 0 0 33 0 0 0 34 1 0 100.00 1 35 0 1 0.00 1 36 0 0 0 37 1 0 100.00 1 38 1 0 100.00 1 39 0 0 0 40 1 0 100.00 1 41 0 0 0 42 0 0 0 43 1 0 100.00 1 44 0 0 0 45 1 0 100.00 1 46 1 0 100.00 1 47 0 0 0 48 1 0 100.00 1 49 0 0 0 50 0 0 0 51 0 0 0 52 0 0 0 53 1 0 100.00 1 54 2 0 100.00 2 55 0 0 0 56 0 0 0 57 2 0 100.00 2 58 1 0 100.00 1 59 1 1 50.00 2 60 1 0 100.00 1 61 1 0 100.00 1 62 0 1 0.00 1 63 0 0 0 64 0 0 0 65 0 0 0 66 2 0 100.00 2 67 0 0 0 68 0 0 0 69 0 0 0 70 0 0 0 71 0 0 0 72 0 0 0 73 0 0 0 74 0 0 0 75 0 0 0 76 0 0 0 77 1 0 100.00 1 78 0 0 0 79 0 0 0 80 0 0 0 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 0 3 0.00 3 2 0 6 0.00 6 3 0 4 0.00 4 4 0 2 0.00 2 5 1 1 50.00 2 6 0 4 0.00 4 7 0 5 0.00 5 8 0 3 0.00 3 9 0 0 0 10 0 3 0.00 3 11 0 4 0.00 4 12 0 1 0.00 1 13 0 6 0.00 6 14 0 4 0.00 4 15 0 6 0.00 6 16 0 0 0 17 0 2 0.00 2 18 0 2 0.00 2 19 0 3 0.00 3 20 0 4 0.00 4 21 0 3 0.00 3 22 0 5 0.00 5 23 0 3 0.00 3 24 0 2 0.00 2 25 0 4 0.00 4 26 0 2 0.00 2 27 0 2 0.00 2 28 0 1 0.00 1 29 0 2 0.00 2 30 0 3 0.00 3 31 0 2 0.00 2 32 0 0 0 33 0 0 0 34 0 3 0.00 3 35 0 0 0 36 0 2 0.00 2 37 0 2 0.00 2 38 0 0 0 39 0 2 0.00 2 40 0 2 0.00 2 41 0 3 0.00 3 42 0 1 0.00 1 43 0 1 0.00 1 44 0 1 0.00 1 45 0 0 0 46 0 1 0.00 1 47 0 4 0.00 4 48 0 2 0.00 2 49 0 0 0 50 0 1 0.00 1 51 0 2 0.00 2 52 0 1 0.00 1 53 0 2 0.00 2 54 0 2 0.00 2 55 0 1 0.00 1 56 0 2 0.00 2 57 0 0 0 58 0 1 0.00 1 59 0 1 0.00 1 60 0 1 0.00 1 61 0 0 0 62 0 0 0 63 0 3 0.00 3 64 0 1 0.00 1 65 0 1 0.00 1 66 0 1 0.00 1 67 0 0 0 68 0 1 0.00 1 69 0 0 0 70 0 0 0 71 0 3 0.00 3 72 0 0 0 73 0 0 0 74 0 1 0.00 1 75 0 1 0.00 1 76 0 0 0 77 0 0 0 78 0 0 0 79 0 0 0 80 0 0 0 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 1 19 5.00 20 2 0 15 0.00 15 3 0 11 0.00 11 4 0 20 0.00 20 5 0 14 0.00 14 6 0 15 0.00 15 7 0 15 0.00 15 8 0 14 0.00 14 9 0 11 0.00 11 10 0 8 0.00 8 11 0 9 0.00 9 12 0 6 0.00 6 13 0 11 0.00 11 14 0 11 0.00 11 15 0 11 0.00 11 16 0 5 0.00 5 17 0 7 0.00 7 18 0 5 0.00 5 19 0 8 0.00 8 20 0 9 0.00 9 21 0 9 0.00 9 22 0 5 0.00 5 23 0 10 0.00 10 24 0 7 0.00 7 25 0 7 0.00 7 26 0 9 0.00 9 27 0 8 0.00 8 28 0 6 0.00 6 29 0 11 0.00 11 30 0 7 0.00 7 31 0 7 0.00 7 32 0 7 0.00 7 33 0 8 0.00 8 34 0 7 0.00 7 35 0 5 0.00 5 36 0 7 0.00 7 37 0 3 0.00 3 38 0 6 0.00 6 39 0 4 0.00 4 40 0 4 0.00 4 41 0 4 0.00 4 42 0 5 0.00 5 43 0 1 0.00 1 44 0 5 0.00 5 45 0 4 0.00 4 46 1 2 33.33 3 47 0 2 0.00 2 48 0 4 0.00 4 49 0 6 0.00 6 50 0 3 0.00 3 51 0 1 0.00 1 52 0 1 0.00 1 53 0 2 0.00 2 54 0 2 0.00 2 55 0 0 0 56 0 3 0.00 3 57 0 4 0.00 4 58 0 1 0.00 1 59 0 1 0.00 1 60 1 1 50.00 2 61 0 1 0.00 1 62 0 2 0.00 2 63 0 1 0.00 1 64 0 1 0.00 1 65 0 2 0.00 2 66 0 1 0.00 1 67 0 2 0.00 2 68 0 1 0.00 1 69 0 2 0.00 2 70 0 2 0.00 2 71 0 2 0.00 2 72 0 1 0.00 1 73 0 0 0 74 0 1 0.00 1 75 0 3 0.00 3 76 0 2 0.00 2 77 0 1 0.00 1 78 0 3 0.00 3 79 0 2 0.00 2 80 0 1 0.00 1