CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 5 2 71.43 7 2 3 0 100.00 3 3 3 1 75.00 4 4 3 0 100.00 3 5 7 0 100.00 7 6 3 1 75.00 4 7 5 2 71.43 7 8 4 2 66.67 6 9 6 0 100.00 6 10 3 0 100.00 3 11 7 1 87.50 8 12 5 1 83.33 6 13 4 0 100.00 4 14 7 1 87.50 8 15 2 1 66.67 3 16 4 1 80.00 5 17 5 1 83.33 6 18 6 0 100.00 6 19 4 1 80.00 5 20 3 0 100.00 3 21 6 0 100.00 6 22 6 1 85.71 7 23 4 2 66.67 6 24 3 0 100.00 3 25 3 3 50.00 6 26 5 1 83.33 6 27 2 1 66.67 3 28 2 1 66.67 3 29 4 1 80.00 5 30 3 0 100.00 3 31 5 0 100.00 5 32 4 2 66.67 6 33 6 0 100.00 6 34 4 0 100.00 4 35 3 2 60.00 5 36 2 0 100.00 2 37 4 0 100.00 4 38 7 0 100.00 7 39 4 0 100.00 4 40 1 1 50.00 2 41 6 0 100.00 6 42 5 0 100.00 5 43 4 1 80.00 5 44 3 1 75.00 4 45 2 1 66.67 3 46 5 1 83.33 6 47 2 1 66.67 3 48 3 2 60.00 5 49 2 1 66.67 3 50 5 0 100.00 5 51 0 0 0 52 1 1 50.00 2 53 3 1 75.00 4 54 3 0 100.00 3 55 3 1 75.00 4 56 4 1 80.00 5 57 1 1 50.00 2 58 3 1 75.00 4 59 5 1 83.33 6 60 1 1 50.00 2 61 6 2 75.00 8 62 3 1 75.00 4 63 0 0 0 64 2 0 100.00 2 65 2 1 66.67 3 66 0 0 0 67 3 0 100.00 3 68 0 3 0.00 3 69 0 0 0 70 0 0 0 71 1 1 50.00 2 72 2 1 66.67 3 73 0 1 0.00 1 74 7 0 100.00 7 75 1 0 100.00 1 76 1 0 100.00 1 77 0 0 0 78 0 1 0.00 1 79 2 1 66.67 3 80 0 0 0 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 1 4 20.00 5 2 1 7 12.50 8 3 0 12 0.00 12 4 0 11 0.00 11 5 0 8 0.00 8 6 0 11 0.00 11 7 0 6 0.00 6 8 0 15 0.00 15 9 0 10 0.00 10 10 0 6 0.00 6 11 0 11 0.00 11 12 0 11 0.00 11 13 0 9 0.00 9 14 0 10 0.00 10 15 0 8 0.00 8 16 0 8 0.00 8 17 0 9 0.00 9 18 0 10 0.00 10 19 0 5 0.00 5 20 0 6 0.00 6 21 0 8 0.00 8 22 0 8 0.00 8 23 0 5 0.00 5 24 0 12 0.00 12 25 0 8 0.00 8 26 1 6 14.29 7 27 0 9 0.00 9 28 0 7 0.00 7 29 1 12 7.69 13 30 0 15 0.00 15 31 0 8 0.00 8 32 0 10 0.00 10 33 0 8 0.00 8 34 1 1 50.00 2 35 0 8 0.00 8 36 0 8 0.00 8 37 0 4 0.00 4 38 0 8 0.00 8 39 0 10 0.00 10 40 0 7 0.00 7 41 0 11 0.00 11 42 0 4 0.00 4 43 1 8 11.11 9 44 0 5 0.00 5 45 0 7 0.00 7 46 1 6 14.29 7 47 0 7 0.00 7 48 0 7 0.00 7 49 0 5 0.00 5 50 0 5 0.00 5 51 0 7 0.00 7 52 0 5 0.00 5 53 0 4 0.00 4 54 0 10 0.00 10 55 1 6 14.29 7 56 0 7 0.00 7 57 0 5 0.00 5 58 0 5 0.00 5 59 0 3 0.00 3 60 0 6 0.00 6 61 0 5 0.00 5 62 0 5 0.00 5 63 0 1 0.00 1 64 0 6 0.00 6 65 0 6 0.00 6 66 1 7 12.50 8 67 0 3 0.00 3 68 0 5 0.00 5 69 0 2 0.00 2 70 0 2 0.00 2 71 0 4 0.00 4 72 0 7 0.00 7 73 0 4 0.00 4 74 0 5 0.00 5 75 0 4 0.00 4 76 1 4 20.00 5 77 0 5 0.00 5 78 0 0 0 79 0 3 0.00 3 80 0 4 0.00 4 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 0 20 0.00 20 2 1 25 3.85 26 3 0 20 0.00 20 4 0 13 0.00 13 5 0 22 0.00 22 6 0 19 0.00 19 7 0 23 0.00 23 8 0 17 0.00 17 9 1 25 3.85 26 10 1 21 4.55 22 11 0 25 0.00 25 12 0 17 0.00 17 13 0 21 0.00 21 14 0 25 0.00 25 15 1 25 3.85 26 16 0 23 0.00 23 17 0 29 0.00 29 18 0 24 0.00 24 19 0 29 0.00 29 20 0 24 0.00 24 21 0 28 0.00 28 22 0 27 0.00 27 23 0 27 0.00 27 24 0 22 0.00 22 25 0 21 0.00 21 26 1 13 7.14 14 27 0 25 0.00 25 28 1 15 6.25 16 29 0 17 0.00 17 30 0 14 0.00 14 31 0 15 0.00 15 32 0 19 0.00 19 33 1 22 4.35 23 34 0 21 0.00 21 35 0 16 0.00 16 36 0 23 0.00 23 37 0 18 0.00 18 38 1 15 6.25 16 39 0 24 0.00 24 40 1 16 5.88 17 41 0 16 0.00 16 42 1 15 6.25 16 43 0 16 0.00 16 44 0 24 0.00 24 45 0 16 0.00 16 46 0 17 0.00 17 47 0 16 0.00 16 48 0 9 0.00 9 49 0 20 0.00 20 50 0 21 0.00 21 51 0 16 0.00 16 52 0 15 0.00 15 53 0 18 0.00 18 54 1 14 6.67 15 55 0 15 0.00 15 56 0 14 0.00 14 57 1 15 6.25 16 58 0 18 0.00 18 59 0 17 0.00 17 60 0 15 0.00 15 61 0 13 0.00 13 62 0 9 0.00 9 63 0 8 0.00 8 64 0 10 0.00 10 65 0 10 0.00 10 66 0 6 0.00 6 67 0 11 0.00 11 68 0 8 0.00 8 69 0 11 0.00 11 70 0 9 0.00 9 71 0 10 0.00 10 72 0 9 0.00 9 73 0 8 0.00 8 74 0 8 0.00 8 75 0 9 0.00 9 76 0 3 0.00 3 77 0 6 0.00 6 78 0 7 0.00 7 79 0 7 0.00 7 80 0 6 0.00 6 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 2 2 50.00 4 2 1 0 100.00 1 3 1 0 100.00 1 4 1 0 100.00 1 5 2 0 100.00 2 6 0 1 0.00 1 7 0 0 0 8 2 0 100.00 2 9 1 0 100.00 1 10 1 1 50.00 2 11 2 0 100.00 2 12 1 0 100.00 1 13 2 0 100.00 2 14 3 1 75.00 4 15 1 0 100.00 1 16 0 1 0.00 1 17 1 1 50.00 2 18 2 0 100.00 2 19 2 0 100.00 2 20 1 0 100.00 1 21 2 0 100.00 2 22 0 0 0 23 0 1 0.00 1 24 0 0 0 25 1 0 100.00 1 26 0 0 0 27 4 1 80.00 5 28 0 0 0 29 0 0 0 30 1 0 100.00 1 31 1 0 100.00 1 32 0 1 0.00 1 33 1 0 100.00 1 34 1 0 100.00 1 35 0 0 0 36 1 0 100.00 1 37 0 0 0 38 1 0 100.00 1 39 0 0 0 40 1 1 50.00 2 41 0 0 0 42 1 0 100.00 1 43 1 1 50.00 2 44 0 0 0 45 0 1 0.00 1 46 2 0 100.00 2 47 2 0 100.00 2 48 0 0 0 49 1 0 100.00 1 50 0 0 0 51 1 0 100.00 1 52 0 0 0 53 1 0 100.00 1 54 0 0 0 55 0 0 0 56 0 0 0 57 1 0 100.00 1 58 0 0 0 59 0 1 0.00 1 60 0 0 0 61 0 0 0 62 0 0 0 63 0 0 0 64 0 0 0 65 0 0 0 66 0 0 0 67 0 0 0 68 0 0 0 69 0 0 0 70 0 0 0 71 0 1 0.00 1 72 1 0 100.00 1 73 0 0 0 74 0 0 0 75 0 0 0 76 0 0 0 77 0 0 0 78 0 0 0 79 0 0 0 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 0 7 0.00 7 2 0 3 0.00 3 3 0 2 0.00 2 4 0 1 0.00 1 5 0 2 0.00 2 6 0 4 0.00 4 7 0 5 0.00 5 8 0 3 0.00 3 9 0 3 0.00 3 10 0 2 0.00 2 11 0 4 0.00 4 12 0 3 0.00 3 13 0 5 0.00 5 14 0 1 0.00 1 15 0 1 0.00 1 16 0 3 0.00 3 17 0 0 0 18 0 2 0.00 2 19 0 0 0 20 0 4 0.00 4 21 0 2 0.00 2 22 0 1 0.00 1 23 0 0 0 24 0 1 0.00 1 25 0 1 0.00 1 26 0 2 0.00 2 27 0 0 0 28 0 2 0.00 2 29 0 0 0 30 0 0 0 31 0 1 0.00 1 32 0 1 0.00 1 33 0 1 0.00 1 34 0 3 0.00 3 35 0 0 0 36 0 1 0.00 1 37 0 3 0.00 3 38 0 1 0.00 1 39 0 0 0 40 0 0 0 41 0 2 0.00 2 42 0 0 0 43 0 1 0.00 1 44 0 3 0.00 3 45 0 1 0.00 1 46 0 1 0.00 1 47 0 1 0.00 1 48 0 0 0 49 0 1 0.00 1 50 0 0 0 51 0 0 0 52 0 1 0.00 1 53 0 1 0.00 1 54 0 0 0 55 0 0 0 56 0 0 0 57 0 0 0 58 0 0 0 59 0 0 0 60 0 0 0 61 0 0 0 62 0 0 0 63 0 2 0.00 2 64 0 2 0.00 2 65 0 0 0 66 0 0 0 67 0 0 0 68 0 0 0 69 0 0 0 70 0 0 0 71 0 1 0.00 1 72 0 0 0 73 0 0 0 74 0 0 0 75 0 3 0.00 3 76 0 0 0 77 0 0 0 78 0 0 0 79 0 1 0.00 1 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 0 19 0.00 19 2 0 7 0.00 7 3 0 8 0.00 8 4 0 13 0.00 13 5 1 9 10.00 10 6 1 6 14.29 7 7 1 12 7.69 13 8 0 9 0.00 9 9 0 9 0.00 9 10 0 5 0.00 5 11 0 3 0.00 3 12 0 2 0.00 2 13 0 3 0.00 3 14 0 4 0.00 4 15 1 7 12.50 8 16 0 2 0.00 2 17 0 5 0.00 5 18 1 3 25.00 4 19 0 4 0.00 4 20 0 2 0.00 2 21 0 7 0.00 7 22 0 4 0.00 4 23 0 6 0.00 6 24 0 4 0.00 4 25 0 5 0.00 5 26 0 3 0.00 3 27 0 2 0.00 2 28 0 4 0.00 4 29 0 7 0.00 7 30 0 3 0.00 3 31 0 2 0.00 2 32 0 3 0.00 3 33 0 1 0.00 1 34 0 2 0.00 2 35 0 3 0.00 3 36 0 1 0.00 1 37 0 1 0.00 1 38 0 3 0.00 3 39 0 2 0.00 2 40 0 5 0.00 5 41 0 2 0.00 2 42 0 4 0.00 4 43 0 4 0.00 4 44 0 2 0.00 2 45 0 3 0.00 3 46 0 1 0.00 1 47 0 3 0.00 3 48 0 1 0.00 1 49 0 3 0.00 3 50 0 3 0.00 3 51 1 0 100.00 1 52 0 2 0.00 2 53 0 1 0.00 1 54 0 3 0.00 3 55 0 5 0.00 5 56 0 2 0.00 2 57 0 3 0.00 3 58 0 1 0.00 1 59 0 1 0.00 1 60 0 4 0.00 4 61 0 4 0.00 4 62 0 1 0.00 1 63 0 2 0.00 2 64 0 2 0.00 2 65 1 1 50.00 2 66 0 0 0 67 0 3 0.00 3 68 0 1 0.00 1 69 0 0 0 70 0 1 0.00 1 71 0 1 0.00 1 72 0 0 0 73 0 3 0.00 3 74 0 0 0 75 0 0 0 76 0 0 0 77 0 1 0.00 1 78 0 0 0 79 0 0 0