File Total Reads Aligned Reads Unaligned Reads Ambiguously Aligned Reads No Genomic Sequence Duplicate Reads (removed) Unique Reads (remaining) Total Cs Methylated CpGs Unmethylated CpGs Methylated CpHs Unmethylated CpHs Methylated CHHs Unmethylated CHHs zr2096_10_s1_R1_bismark_bt2_pe.bam 10000 5476 2805 1719 0 0 5476 189284 18472 8427 1345 42228 4569 114243 zr2096_1_s1_R1_bismark_bt2_pe.bam 10000 2530 6709 761 0 1 2529 81198 7180 3215 617 16918 3994 49274 zr2096_2_s1_R1_bismark_bt2_pe.bam 10000 5005 3407 1588 0 4 5001 158134 15102 6549 1285 35758 5276 94164 zr2096_3_s1_R1_bismark_bt2_pe.bam 10000 5583 2628 1789 0 1 5582 194605 21681 6661 1445 43123 4620 117075 zr2096_4_s1_R1_bismark_bt2_pe.bam 10000 5532 2681 1787 0 0 5532 177679 15435 7999 1155 38807 5016 109267 zr2096_5_s1_R1_bismark_bt2_pe.bam 10000 5290 3067 1643 0 0 5290 176153 15197 7270 1267 37436 4823 110160 zr2096_6_s1_R1_bismark_bt2_pe.bam 10000 5632 2559 1809 0 0 5632 180677 17859 6629 1203 39618 4603 110765 zr2096_7_s1_R1_bismark_bt2_pe.bam 10000 5351 3140 1509 0 0 5351 180381 16312 6750 1331 39028 4642 112318 zr2096_8_s1_R1_bismark_bt2_pe.bam 10000 4805 3690 1505 0 0 4805 156859 13026 6649 1109 34130 4711 97234 zr2096_9_s1_R1_bismark_bt2_pe.bam 10000 5195 3209 1596 0 0 5195 183746 19918 6454 1544 40511 4966 110353