zr2096_9_s1_R1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 5195 lines in total Total number of methylation call strings processed: 10390 Final Cytosine Methylation Report ================================= Total number of C's analysed: 112766 Total methylated C's in CpG context: 11977 Total methylated C's in CHG context: 995 Total methylated C's in CHH context: 3176 Total C to T conversions in CpG context: 4043 Total C to T conversions in CHG context: 24674 Total C to T conversions in CHH context: 67901 C methylated in CpG context: 74.8% C methylated in CHG context: 3.9% C methylated in CHH context: 4.5%