zr2096_8_s1_R1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 4805 lines in total Total number of methylation call strings processed: 9610 Final Cytosine Methylation Report ================================= Total number of C's analysed: 98713 Total methylated C's in CpG context: 8092 Total methylated C's in CHG context: 737 Total methylated C's in CHH context: 3028 Total C to T conversions in CpG context: 4207 Total C to T conversions in CHG context: 21362 Total C to T conversions in CHH context: 61287 C methylated in CpG context: 65.8% C methylated in CHG context: 3.3% C methylated in CHH context: 4.7%