CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 64 41 60.95 105 2 95 48 66.43 143 3 83 43 65.87 126 4 53 54 49.53 107 5 46 45 50.55 91 6 42 42 50.00 84 7 43 36 54.43 79 8 50 49 50.51 99 9 49 29 62.82 78 10 66 35 65.35 101 11 57 33 63.33 90 12 75 13 85.23 88 13 78 39 66.67 117 14 69 29 70.41 98 15 67 44 60.36 111 16 59 36 62.11 95 17 71 39 64.55 110 18 78 22 78.00 100 19 73 34 68.22 107 20 73 32 69.52 105 21 70 40 63.64 110 22 80 31 72.07 111 23 79 37 68.10 116 24 66 35 65.35 101 25 70 27 72.16 97 26 80 33 70.80 113 27 76 35 68.47 111 28 78 36 68.42 114 29 80 38 67.80 118 30 88 42 67.69 130 31 70 46 60.34 116 32 54 32 62.79 86 33 70 42 62.50 112 34 82 34 70.69 116 35 66 44 60.00 110 36 80 34 70.18 114 37 68 33 67.33 101 38 64 41 60.95 105 39 74 46 61.67 120 40 68 40 62.96 108 41 67 42 61.47 109 42 75 41 64.66 116 43 84 34 71.19 118 44 81 39 67.50 120 45 83 43 65.87 126 46 75 24 75.76 99 47 75 48 60.98 123 48 86 23 78.90 109 49 67 48 58.26 115 50 72 37 66.06 109 51 80 30 72.73 110 52 73 35 67.59 108 53 79 29 73.15 108 54 75 28 72.82 103 55 70 40 63.64 110 56 75 32 70.09 107 57 60 31 65.93 91 58 73 40 64.60 113 59 79 27 74.53 106 60 73 42 63.48 115 61 77 27 74.04 104 62 64 26 71.11 90 63 65 39 62.50 104 64 83 27 75.45 110 65 72 33 68.57 105 66 77 31 71.30 108 67 61 33 64.89 94 68 58 20 74.36 78 69 74 38 66.07 112 70 68 29 70.10 97 71 67 32 67.68 99 72 75 23 76.53 98 73 53 36 59.55 89 74 74 26 74.00 100 75 63 33 65.62 96 76 51 35 59.30 86 77 57 31 64.77 88 78 61 29 67.78 90 79 61 45 57.55 106 80 66 22 75.00 88 81 45 27 62.50 72 82 50 32 60.98 82 83 56 27 67.47 83 84 53 30 63.86 83 85 52 41 55.91 93 86 51 24 68.00 75 87 58 25 69.88 83 88 53 33 61.63 86 89 47 28 62.67 75 90 54 24 69.23 78 91 58 34 63.04 92 92 61 27 69.32 88 93 47 31 60.26 78 94 48 19 71.64 67 95 51 23 68.92 74 96 29 19 60.42 48 97 34 25 57.63 59 98 47 18 72.31 65 99 28 25 52.83 53 100 9 11 45.00 20 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 63 279 18.42 342 2 33 112 22.76 145 3 30 141 17.54 171 4 18 198 8.33 216 5 10 236 4.07 246 6 3 248 1.20 251 7 8 178 4.30 186 8 6 154 3.75 160 9 2 158 1.25 160 10 4 148 2.63 152 11 9 187 4.59 196 12 6 177 3.28 183 13 3 171 1.72 174 14 1 191 0.52 192 15 2 150 1.32 152 16 2 174 1.14 176 17 5 175 2.78 180 18 5 185 2.63 190 19 5 183 2.66 188 20 3 181 1.63 184 21 5 174 2.79 179 22 5 187 2.60 192 23 5 194 2.51 199 24 4 177 2.21 181 25 3 188 1.57 191 26 5 189 2.58 194 27 4 209 1.88 213 28 3 197 1.50 200 29 4 211 1.86 215 30 6 197 2.96 203 31 2 189 1.05 191 32 5 186 2.62 191 33 7 205 3.30 212 34 8 181 4.23 189 35 6 179 3.24 185 36 7 188 3.59 195 37 4 173 2.26 177 38 4 185 2.12 189 39 4 194 2.02 198 40 7 184 3.66 191 41 4 192 2.04 196 42 6 163 3.55 169 43 6 188 3.09 194 44 2 212 0.93 214 45 3 196 1.51 199 46 5 199 2.45 204 47 5 187 2.60 192 48 2 206 0.96 208 49 7 181 3.72 188 50 2 211 0.94 213 51 1 205 0.49 206 52 3 191 1.55 194 53 4 159 2.45 163 54 5 208 2.35 213 55 6 196 2.97 202 56 1 172 0.58 173 57 5 183 2.66 188 58 4 186 2.11 190 59 4 205 1.91 209 60 6 168 3.45 174 61 1 183 0.54 184 62 4 183 2.14 187 63 4 176 2.22 180 64 4 159 2.45 163 65 9 176 4.86 185 66 7 159 4.22 166 67 4 158 2.47 162 68 2 168 1.18 170 69 3 188 1.57 191 70 3 159 1.85 162 71 4 151 2.58 155 72 9 179 4.79 188 73 8 162 4.71 170 74 1 125 0.79 126 75 2 177 1.12 179 76 4 167 2.34 171 77 1 154 0.65 155 78 3 143 2.05 146 79 4 155 2.52 159 80 5 150 3.23 155 81 6 134 4.29 140 82 3 143 2.05 146 83 3 133 2.21 136 84 5 158 3.07 163 85 5 144 3.36 149 86 3 139 2.11 142 87 2 154 1.28 156 88 2 133 1.48 135 89 4 141 2.76 145 90 7 132 5.04 139 91 4 144 2.70 148 92 4 124 3.12 128 93 1 114 0.87 115 94 5 133 3.62 138 95 2 130 1.52 132 96 3 117 2.50 120 97 4 109 3.54 113 98 3 113 2.59 116 99 0 109 0.00 109 100 2 86 2.27 88 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 99 261 27.50 360 2 121 323 27.25 444 3 105 283 27.06 388 4 73 320 18.58 393 5 45 422 9.64 467 6 34 534 5.99 568 7 49 552 8.15 601 8 30 592 4.82 622 9 34 547 5.85 581 10 27 545 4.72 572 11 31 530 5.53 561 12 38 552 6.44 590 13 22 594 3.57 616 14 36 554 6.10 590 15 28 544 4.90 572 16 26 530 4.68 556 17 32 539 5.60 571 18 29 536 5.13 565 19 34 548 5.84 582 20 27 579 4.46 606 21 24 575 4.01 599 22 35 527 6.23 562 23 30 534 5.32 564 24 28 549 4.85 577 25 21 571 3.55 592 26 25 550 4.35 575 27 27 498 5.14 525 28 25 556 4.30 581 29 31 571 5.15 602 30 25 550 4.35 575 31 35 547 6.01 582 32 18 576 3.03 594 33 28 553 4.82 581 34 21 546 3.70 567 35 23 554 3.99 577 36 21 551 3.67 572 37 20 550 3.51 570 38 27 561 4.59 588 39 23 562 3.93 585 40 21 551 3.67 572 41 16 578 2.69 594 42 19 565 3.25 584 43 17 517 3.18 534 44 23 542 4.07 565 45 17 559 2.95 576 46 23 558 3.96 581 47 15 565 2.59 580 48 27 532 4.83 559 49 18 534 3.26 552 50 26 574 4.33 600 51 21 540 3.74 561 52 19 544 3.37 563 53 16 562 2.77 578 54 24 536 4.29 560 55 22 517 4.08 539 56 15 535 2.73 550 57 15 513 2.84 528 58 18 541 3.22 559 59 19 547 3.36 566 60 14 521 2.62 535 61 20 496 3.88 516 62 20 516 3.73 536 63 16 483 3.21 499 64 20 506 3.80 526 65 13 503 2.52 516 66 12 514 2.28 526 67 21 516 3.91 537 68 15 484 3.01 499 69 17 463 3.54 480 70 15 509 2.86 524 71 13 480 2.64 493 72 15 476 3.05 491 73 19 449 4.06 468 74 15 456 3.18 471 75 9 452 1.95 461 76 15 458 3.17 473 77 18 464 3.73 482 78 11 423 2.53 434 79 16 417 3.70 433 80 12 434 2.69 446 81 16 431 3.58 447 82 2 407 0.49 409 83 9 400 2.20 409 84 12 412 2.83 424 85 12 409 2.85 421 86 13 410 3.07 423 87 15 404 3.58 419 88 24 400 5.66 424 89 10 353 2.75 363 90 11 372 2.87 383 91 17 355 4.57 372 92 5 358 1.38 363 93 9 347 2.53 356 94 8 364 2.15 372 95 13 327 3.82 340 96 15 334 4.30 349 97 11 320 3.32 331 98 16 313 4.86 329 99 8 291 2.68 299 100 2 260 0.76 262 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 39 28 58.21 67 2 57 29 66.28 86 3 56 27 67.47 83 4 28 27 50.91 55 5 27 23 54.00 50 6 19 21 47.50 40 7 17 20 45.95 37 8 28 26 51.85 54 9 27 13 67.50 40 10 22 13 62.86 35 11 39 15 72.22 54 12 33 13 71.74 46 13 31 17 64.58 48 14 40 11 78.43 51 15 28 8 77.78 36 16 25 13 65.79 38 17 19 21 47.50 40 18 17 13 56.67 30 19 26 7 78.79 33 20 27 15 64.29 42 21 34 13 72.34 47 22 18 16 52.94 34 23 23 13 63.89 36 24 30 14 68.18 44 25 24 10 70.59 34 26 18 9 66.67 27 27 23 17 57.50 40 28 18 12 60.00 30 29 21 9 70.00 30 30 28 7 80.00 35 31 13 10 56.52 23 32 23 7 76.67 30 33 21 11 65.62 32 34 18 10 64.29 28 35 21 7 75.00 28 36 17 18 48.57 35 37 14 11 56.00 25 38 25 8 75.76 33 39 15 11 57.69 26 40 22 7 75.86 29 41 16 7 69.57 23 42 14 12 53.85 26 43 21 7 75.00 28 44 23 7 76.67 30 45 18 7 72.00 25 46 17 4 80.95 21 47 15 9 62.50 24 48 16 7 69.57 23 49 8 10 44.44 18 50 14 8 63.64 22 51 9 10 47.37 19 52 12 4 75.00 16 53 8 10 44.44 18 54 7 9 43.75 16 55 12 4 75.00 16 56 14 2 87.50 16 57 15 6 71.43 21 58 11 8 57.89 19 59 7 6 53.85 13 60 8 4 66.67 12 61 7 10 41.18 17 62 10 5 66.67 15 63 14 1 93.33 15 64 17 5 77.27 22 65 8 11 42.11 19 66 11 5 68.75 16 67 8 4 66.67 12 68 15 1 93.75 16 69 8 3 72.73 11 70 4 4 50.00 8 71 8 5 61.54 13 72 11 5 68.75 16 73 11 3 78.57 14 74 7 3 70.00 10 75 7 3 70.00 10 76 11 5 68.75 16 77 8 0 100.00 8 78 9 4 69.23 13 79 5 3 62.50 8 80 6 5 54.55 11 81 4 4 50.00 8 82 6 9 40.00 15 83 9 1 90.00 10 84 8 3 72.73 11 85 4 4 50.00 8 86 3 4 42.86 7 87 8 0 100.00 8 88 3 2 60.00 5 89 8 6 57.14 14 90 7 3 70.00 10 91 7 3 70.00 10 92 8 1 88.89 9 93 7 4 63.64 11 94 1 3 25.00 4 95 4 2 66.67 6 96 3 4 42.86 7 97 3 1 75.00 4 98 1 3 25.00 4 99 2 2 50.00 4 100 1 2 33.33 3 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 30 168 15.15 198 2 12 52 18.75 64 3 17 79 17.71 96 4 11 106 9.40 117 5 13 133 8.90 146 6 9 131 6.43 140 7 4 85 4.49 89 8 4 63 5.97 67 9 2 80 2.44 82 10 4 86 4.44 90 11 6 70 7.89 76 12 4 69 5.48 73 13 1 86 1.15 87 14 5 69 6.76 74 15 5 86 5.49 91 16 5 64 7.25 69 17 2 58 3.33 60 18 2 67 2.90 69 19 3 78 3.70 81 20 4 70 5.41 74 21 2 66 2.94 68 22 1 48 2.04 49 23 2 62 3.12 64 24 0 59 0.00 59 25 2 57 3.39 59 26 3 52 5.45 55 27 0 63 0.00 63 28 3 63 4.55 66 29 3 46 6.12 49 30 0 54 0.00 54 31 2 67 2.90 69 32 1 63 1.56 64 33 0 48 0.00 48 34 1 42 2.33 43 35 1 50 1.96 51 36 1 50 1.96 51 37 1 42 2.33 43 38 0 52 0.00 52 39 1 42 2.33 43 40 0 52 0.00 52 41 1 49 2.00 50 42 1 32 3.03 33 43 1 51 1.92 52 44 1 34 2.86 35 45 0 43 0.00 43 46 3 45 6.25 48 47 3 38 7.32 41 48 0 37 0.00 37 49 0 39 0.00 39 50 1 38 2.56 39 51 1 32 3.03 33 52 0 36 0.00 36 53 0 35 0.00 35 54 1 33 2.94 34 55 0 35 0.00 35 56 0 30 0.00 30 57 0 34 0.00 34 58 1 40 2.44 41 59 1 40 2.44 41 60 0 23 0.00 23 61 0 26 0.00 26 62 0 25 0.00 25 63 0 23 0.00 23 64 0 27 0.00 27 65 0 21 0.00 21 66 1 31 3.12 32 67 0 20 0.00 20 68 0 29 0.00 29 69 0 24 0.00 24 70 0 25 0.00 25 71 0 27 0.00 27 72 0 16 0.00 16 73 0 22 0.00 22 74 0 23 0.00 23 75 0 23 0.00 23 76 1 14 6.67 15 77 0 16 0.00 16 78 0 28 0.00 28 79 0 24 0.00 24 80 0 20 0.00 20 81 1 17 5.56 18 82 0 23 0.00 23 83 1 25 3.85 26 84 0 14 0.00 14 85 0 16 0.00 16 86 0 8 0.00 8 87 1 13 7.14 14 88 1 20 4.76 21 89 1 19 5.00 20 90 0 14 0.00 14 91 0 12 0.00 12 92 0 11 0.00 11 93 0 17 0.00 17 94 0 12 0.00 12 95 0 12 0.00 12 96 0 12 0.00 12 97 0 15 0.00 15 98 0 12 0.00 12 99 1 12 7.69 13 100 0 9 0.00 9 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 63 141 30.88 204 2 76 187 28.90 263 3 38 177 17.67 215 4 32 174 15.53 206 5 24 241 9.06 265 6 19 265 6.69 284 7 16 299 5.08 315 8 19 292 6.11 311 9 15 284 5.02 299 10 6 229 2.55 235 11 12 217 5.24 229 12 16 239 6.27 255 13 18 231 7.23 249 14 14 223 5.91 237 15 10 219 4.37 229 16 18 221 7.53 239 17 4 232 1.69 236 18 15 221 6.36 236 19 11 216 4.85 227 20 18 195 8.45 213 21 9 191 4.50 200 22 9 193 4.46 202 23 4 181 2.16 185 24 6 194 3.00 200 25 11 168 6.15 179 26 8 167 4.57 175 27 5 174 2.79 179 28 10 195 4.88 205 29 4 179 2.19 183 30 8 158 4.82 166 31 11 164 6.29 175 32 5 171 2.84 176 33 4 151 2.58 155 34 6 152 3.80 158 35 9 161 5.29 170 36 6 165 3.51 171 37 2 155 1.27 157 38 8 129 5.84 137 39 4 154 2.53 158 40 3 135 2.17 138 41 6 160 3.61 166 42 4 123 3.15 127 43 3 128 2.29 131 44 4 140 2.78 144 45 2 150 1.32 152 46 5 147 3.29 152 47 5 113 4.24 118 48 5 123 3.91 128 49 4 100 3.85 104 50 2 118 1.67 120 51 1 107 0.93 108 52 2 106 1.85 108 53 2 120 1.64 122 54 4 118 3.28 122 55 3 108 2.70 111 56 2 112 1.75 114 57 2 108 1.82 110 58 3 114 2.56 117 59 3 82 3.53 85 60 0 81 0.00 81 61 1 91 1.09 92 62 2 97 2.02 99 63 3 92 3.16 95 64 0 87 0.00 87 65 2 90 2.17 92 66 0 83 0.00 83 67 2 76 2.56 78 68 1 100 0.99 101 69 2 89 2.20 91 70 0 86 0.00 86 71 3 79 3.66 82 72 3 74 3.90 77 73 1 64 1.54 65 74 2 56 3.45 58 75 0 62 0.00 62 76 0 82 0.00 82 77 0 73 0.00 73 78 2 60 3.23 62 79 2 64 3.03 66 80 1 74 1.33 75 81 0 59 0.00 59 82 1 63 1.56 64 83 2 49 3.92 51 84 0 51 0.00 51 85 2 49 3.92 51 86 1 68 1.45 69 87 1 45 2.17 46 88 0 45 0.00 45 89 1 39 2.50 40 90 0 45 0.00 45 91 1 41 2.38 42 92 0 55 0.00 55 93 0 47 0.00 47 94 1 48 2.04 49 95 0 43 0.00 43 96 0 41 0.00 41 97 0 39 0.00 39 98 1 46 2.13 47 99 0 41 0.00 41 100 0 33 0.00 33