CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 86 46 65.15 132 2 129 63 67.19 192 3 110 65 62.86 175 4 80 66 54.79 146 5 72 52 58.06 124 6 57 30 65.52 87 7 58 44 56.86 102 8 54 37 59.34 91 9 89 29 75.42 118 10 66 28 70.21 94 11 82 47 63.57 129 12 84 37 69.42 121 13 100 33 75.19 133 14 71 33 68.27 104 15 85 30 73.91 115 16 82 41 66.67 123 17 96 30 76.19 126 18 88 39 69.29 127 19 97 33 74.62 130 20 101 37 73.19 138 21 97 39 71.32 136 22 94 39 70.68 133 23 98 44 69.01 142 24 101 37 73.19 138 25 87 35 71.31 122 26 85 35 70.83 120 27 100 35 74.07 135 28 86 45 65.65 131 29 88 33 72.73 121 30 96 38 71.64 134 31 75 34 68.81 109 32 101 38 72.66 139 33 88 49 64.23 137 34 111 36 75.51 147 35 89 39 69.53 128 36 94 33 74.02 127 37 98 27 78.40 125 38 99 30 76.74 129 39 77 38 66.96 115 40 100 46 68.49 146 41 96 26 78.69 122 42 109 44 71.24 153 43 103 32 76.30 135 44 88 37 70.40 125 45 105 32 76.64 137 46 101 43 70.14 144 47 86 46 65.15 132 48 101 35 74.26 136 49 82 45 64.57 127 50 91 38 70.54 129 51 87 28 75.65 115 52 101 29 77.69 130 53 90 29 75.63 119 54 92 34 73.02 126 55 84 37 69.42 121 56 97 40 70.80 137 57 92 38 70.77 130 58 97 35 73.48 132 59 91 32 73.98 123 60 84 30 73.68 114 61 80 37 68.38 117 62 92 23 80.00 115 63 110 36 75.34 146 64 72 28 72.00 100 65 95 36 72.52 131 66 95 25 79.17 120 67 80 17 82.47 97 68 77 28 73.33 105 69 86 36 70.49 122 70 84 31 73.04 115 71 86 28 75.44 114 72 75 33 69.44 108 73 79 35 69.30 114 74 91 31 74.59 122 75 84 34 71.19 118 76 86 24 78.18 110 77 78 22 78.00 100 78 80 34 70.18 114 79 71 36 66.36 107 80 82 27 75.23 109 81 77 27 74.04 104 82 58 27 68.24 85 83 56 23 70.89 79 84 71 25 73.96 96 85 73 25 74.49 98 86 65 28 69.89 93 87 59 29 67.05 88 88 70 24 74.47 94 89 43 30 58.90 73 90 80 18 81.63 98 91 64 32 66.67 96 92 62 27 69.66 89 93 64 34 65.31 98 94 59 22 72.84 81 95 63 29 68.48 92 96 38 18 67.86 56 97 62 15 80.52 77 98 40 25 61.54 65 99 46 22 67.65 68 100 5 14 26.32 19 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 61 326 15.76 387 2 36 112 24.32 148 3 33 153 17.74 186 4 19 220 7.95 239 5 10 251 3.83 261 6 11 298 3.56 309 7 10 190 5.00 200 8 5 182 2.67 187 9 5 179 2.72 184 10 7 172 3.91 179 11 16 184 8.00 200 12 7 194 3.48 201 13 4 203 1.93 207 14 10 197 4.83 207 15 10 210 4.55 220 16 7 205 3.30 212 17 5 221 2.21 226 18 4 213 1.84 217 19 5 211 2.31 216 20 6 204 2.86 210 21 4 243 1.62 247 22 5 192 2.54 197 23 4 196 2.00 200 24 5 201 2.43 206 25 8 225 3.43 233 26 7 210 3.23 217 27 6 197 2.96 203 28 5 223 2.19 228 29 6 233 2.51 239 30 4 217 1.81 221 31 6 206 2.83 212 32 7 201 3.37 208 33 5 222 2.20 227 34 5 223 2.19 228 35 5 227 2.16 232 36 4 223 1.76 227 37 4 199 1.97 203 38 1 223 0.45 224 39 5 248 1.98 253 40 7 198 3.41 205 41 9 240 3.61 249 42 6 236 2.48 242 43 2 228 0.87 230 44 6 233 2.51 239 45 4 210 1.87 214 46 6 205 2.84 211 47 9 214 4.04 223 48 4 247 1.59 251 49 5 208 2.35 213 50 5 225 2.17 230 51 5 220 2.22 225 52 3 219 1.35 222 53 6 224 2.61 230 54 1 215 0.46 216 55 3 233 1.27 236 56 8 225 3.43 233 57 1 195 0.51 196 58 10 212 4.50 222 59 1 206 0.48 207 60 1 211 0.47 212 61 6 220 2.65 226 62 3 215 1.38 218 63 5 197 2.48 202 64 5 218 2.24 223 65 3 218 1.36 221 66 5 199 2.45 204 67 2 211 0.94 213 68 6 203 2.87 209 69 5 186 2.62 191 70 4 184 2.13 188 71 8 188 4.08 196 72 5 169 2.87 174 73 2 193 1.03 195 74 6 176 3.30 182 75 1 167 0.60 168 76 7 163 4.12 170 77 4 202 1.94 206 78 8 180 4.26 188 79 4 185 2.12 189 80 3 165 1.79 168 81 5 181 2.69 186 82 5 149 3.25 154 83 3 172 1.71 175 84 6 171 3.39 177 85 5 164 2.96 169 86 6 150 3.85 156 87 3 167 1.76 170 88 3 154 1.91 157 89 7 172 3.91 179 90 7 148 4.52 155 91 5 113 4.24 118 92 7 141 4.73 148 93 3 146 2.01 149 94 4 142 2.74 146 95 5 135 3.57 140 96 3 128 2.29 131 97 3 127 2.31 130 98 5 148 3.27 153 99 3 123 2.38 126 100 0 99 0.00 99 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 116 245 32.13 361 2 137 323 29.78 460 3 101 288 25.96 389 4 57 400 12.47 457 5 56 480 10.45 536 6 34 563 5.70 597 7 37 639 5.47 676 8 40 617 6.09 657 9 25 631 3.81 656 10 27 608 4.25 635 11 22 588 3.61 610 12 21 624 3.26 645 13 29 635 4.37 664 14 31 611 4.83 642 15 22 605 3.51 627 16 25 612 3.92 637 17 29 578 4.78 607 18 20 615 3.15 635 19 31 587 5.02 618 20 20 620 3.12 640 21 39 610 6.01 649 22 23 595 3.72 618 23 28 620 4.32 648 24 32 611 4.98 643 25 29 617 4.49 646 26 39 588 6.22 627 27 28 604 4.43 632 28 26 636 3.93 662 29 24 649 3.57 673 30 25 621 3.87 646 31 18 685 2.56 703 32 23 639 3.47 662 33 23 644 3.45 667 34 23 660 3.37 683 35 16 649 2.41 665 36 24 623 3.71 647 37 16 660 2.37 676 38 31 630 4.69 661 39 21 647 3.14 668 40 16 624 2.50 640 41 19 630 2.93 649 42 19 622 2.96 641 43 21 644 3.16 665 44 23 666 3.34 689 45 26 658 3.80 684 46 25 652 3.69 677 47 15 629 2.33 644 48 22 659 3.23 681 49 18 624 2.80 642 50 17 598 2.76 615 51 15 629 2.33 644 52 17 616 2.69 633 53 23 638 3.48 661 54 16 594 2.62 610 55 25 649 3.71 674 56 13 657 1.94 670 57 15 602 2.43 617 58 14 633 2.16 647 59 18 611 2.86 629 60 14 612 2.24 626 61 22 587 3.61 609 62 17 591 2.80 608 63 8 626 1.26 634 64 10 595 1.65 605 65 12 579 2.03 591 66 18 570 3.06 588 67 14 620 2.21 634 68 13 594 2.14 607 69 9 607 1.46 616 70 18 578 3.02 596 71 14 555 2.46 569 72 11 526 2.05 537 73 20 539 3.58 559 74 19 525 3.49 544 75 9 526 1.68 535 76 18 541 3.22 559 77 25 506 4.71 531 78 11 530 2.03 541 79 18 517 3.36 535 80 13 510 2.49 523 81 13 548 2.32 561 82 12 526 2.23 538 83 12 483 2.42 495 84 16 504 3.08 520 85 6 483 1.23 489 86 13 454 2.78 467 87 17 482 3.41 499 88 9 467 1.89 476 89 12 413 2.82 425 90 8 410 1.91 418 91 9 455 1.94 464 92 16 427 3.61 443 93 14 434 3.12 448 94 8 418 1.88 426 95 17 433 3.78 450 96 13 395 3.19 408 97 16 419 3.68 435 98 14 397 3.41 411 99 13 390 3.23 403 100 13 303 4.11 316 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 46 27 63.01 73 2 51 39 56.67 90 3 68 29 70.10 97 4 43 33 56.58 76 5 40 28 58.82 68 6 10 14 41.67 24 7 30 21 58.82 51 8 26 21 55.32 47 9 32 19 62.75 51 10 27 18 60.00 45 11 32 20 61.54 52 12 38 20 65.52 58 13 28 16 63.64 44 14 32 32 50.00 64 15 33 12 73.33 45 16 35 20 63.64 55 17 32 32 50.00 64 18 34 17 66.67 51 19 20 15 57.14 35 20 29 19 60.42 48 21 35 13 72.92 48 22 32 16 66.67 48 23 23 13 63.89 36 24 19 16 54.29 35 25 34 14 70.83 48 26 30 11 73.17 41 27 23 7 76.67 30 28 32 15 68.09 47 29 32 10 76.19 42 30 23 11 67.65 34 31 28 8 77.78 36 32 30 15 66.67 45 33 23 11 67.65 34 34 25 9 73.53 34 35 32 10 76.19 42 36 27 9 75.00 36 37 21 7 75.00 28 38 24 2 92.31 26 39 24 8 75.00 32 40 27 12 69.23 39 41 30 2 93.75 32 42 17 12 58.62 29 43 19 11 63.33 30 44 24 6 80.00 30 45 23 5 82.14 28 46 22 8 73.33 30 47 18 10 64.29 28 48 15 12 55.56 27 49 11 8 57.89 19 50 13 6 68.42 19 51 25 6 80.65 31 52 26 6 81.25 32 53 20 3 86.96 23 54 18 5 78.26 23 55 16 3 84.21 19 56 16 7 69.57 23 57 15 4 78.95 19 58 14 11 56.00 25 59 18 14 56.25 32 60 15 12 55.56 27 61 12 5 70.59 17 62 17 7 70.83 24 63 14 5 73.68 19 64 10 5 66.67 15 65 11 5 68.75 16 66 8 4 66.67 12 67 9 6 60.00 15 68 5 2 71.43 7 69 7 11 38.89 18 70 6 3 66.67 9 71 12 4 75.00 16 72 11 7 61.11 18 73 5 3 62.50 8 74 7 1 87.50 8 75 4 2 66.67 6 76 7 7 50.00 14 77 11 2 84.62 13 78 10 7 58.82 17 79 3 6 33.33 9 80 8 4 66.67 12 81 9 0 100.00 9 82 10 4 71.43 14 83 11 3 78.57 14 84 4 3 57.14 7 85 7 5 58.33 12 86 5 5 50.00 10 87 11 4 73.33 15 88 7 6 53.85 13 89 6 4 60.00 10 90 3 5 37.50 8 91 7 2 77.78 9 92 6 2 75.00 8 93 4 0 100.00 4 94 7 0 100.00 7 95 8 4 66.67 12 96 5 1 83.33 6 97 2 2 50.00 4 98 3 2 60.00 5 99 2 2 50.00 4 100 1 2 33.33 3 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 46 220 17.29 266 2 18 78 18.75 96 3 26 109 19.26 135 4 17 109 13.49 126 5 7 105 6.25 112 6 5 155 3.12 160 7 5 83 5.68 88 8 4 85 4.49 89 9 4 102 3.77 106 10 7 79 8.14 86 11 6 114 5.00 120 12 5 79 5.95 84 13 10 73 12.05 83 14 2 85 2.30 87 15 4 75 5.06 79 16 4 78 4.88 82 17 2 71 2.74 73 18 1 82 1.20 83 19 3 67 4.29 70 20 2 83 2.35 85 21 4 77 4.94 81 22 3 80 3.61 83 23 4 76 5.00 80 24 1 84 1.18 85 25 2 78 2.50 80 26 3 73 3.95 76 27 1 62 1.59 63 28 1 77 1.28 78 29 2 63 3.08 65 30 3 70 4.11 73 31 1 53 1.85 54 32 3 67 4.29 70 33 6 65 8.45 71 34 0 59 0.00 59 35 2 63 3.08 65 36 2 59 3.28 61 37 1 43 2.27 44 38 1 56 1.75 57 39 2 66 2.94 68 40 0 49 0.00 49 41 2 60 3.23 62 42 3 44 6.38 47 43 0 42 0.00 42 44 0 61 0.00 61 45 3 60 4.76 63 46 0 42 0.00 42 47 1 44 2.22 45 48 2 45 4.26 47 49 0 35 0.00 35 50 2 36 5.26 38 51 3 53 5.36 56 52 1 31 3.12 32 53 1 41 2.38 42 54 0 26 0.00 26 55 1 45 2.17 46 56 2 37 5.13 39 57 2 32 5.88 34 58 0 31 0.00 31 59 2 36 5.26 38 60 3 38 7.32 41 61 0 28 0.00 28 62 0 34 0.00 34 63 0 33 0.00 33 64 0 26 0.00 26 65 1 35 2.78 36 66 0 28 0.00 28 67 1 44 2.22 45 68 1 31 3.12 32 69 0 24 0.00 24 70 2 18 10.00 20 71 2 31 6.06 33 72 0 25 0.00 25 73 0 21 0.00 21 74 1 22 4.35 23 75 1 24 4.00 25 76 0 20 0.00 20 77 0 27 0.00 27 78 1 23 4.17 24 79 0 19 0.00 19 80 0 20 0.00 20 81 0 18 0.00 18 82 1 20 4.76 21 83 0 21 0.00 21 84 0 11 0.00 11 85 0 21 0.00 21 86 1 16 5.88 17 87 0 20 0.00 20 88 0 16 0.00 16 89 1 17 5.56 18 90 0 18 0.00 18 91 1 15 6.25 16 92 0 7 0.00 7 93 0 15 0.00 15 94 0 10 0.00 10 95 0 14 0.00 14 96 0 17 0.00 17 97 0 13 0.00 13 98 0 10 0.00 10 99 0 16 0.00 16 100 0 9 0.00 9 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 71 154 31.56 225 2 86 216 28.48 302 3 45 195 18.75 240 4 36 230 13.53 266 5 30 264 10.20 294 6 20 302 6.21 322 7 19 347 5.19 366 8 23 316 6.78 339 9 14 308 4.35 322 10 14 315 4.26 329 11 15 281 5.07 296 12 17 268 5.96 285 13 8 273 2.85 281 14 13 275 4.51 288 15 13 251 4.92 264 16 19 266 6.67 285 17 12 284 4.05 296 18 14 264 5.04 278 19 13 275 4.51 288 20 14 239 5.53 253 21 9 228 3.80 237 22 11 227 4.62 238 23 11 217 4.82 228 24 9 207 4.17 216 25 5 207 2.36 212 26 12 227 5.02 239 27 8 219 3.52 227 28 7 217 3.12 224 29 13 218 5.63 231 30 4 221 1.78 225 31 3 201 1.47 204 32 8 196 3.92 204 33 4 177 2.21 181 34 4 218 1.80 222 35 5 152 3.18 157 36 4 182 2.15 186 37 8 166 4.60 174 38 6 165 3.51 171 39 7 162 4.14 169 40 2 167 1.18 169 41 1 181 0.55 182 42 0 176 0.00 176 43 5 158 3.07 163 44 3 147 2.00 150 45 4 151 2.58 155 46 1 162 0.61 163 47 1 140 0.71 141 48 1 125 0.79 126 49 7 132 5.04 139 50 1 132 0.75 133 51 1 135 0.74 136 52 3 116 2.52 119 53 4 119 3.25 123 54 1 117 0.85 118 55 1 118 0.84 119 56 0 102 0.00 102 57 3 109 2.68 112 58 3 119 2.46 122 59 6 112 5.08 118 60 2 113 1.74 115 61 1 129 0.77 130 62 4 110 3.51 114 63 3 112 2.61 115 64 2 99 1.98 101 65 2 84 2.33 86 66 0 96 0.00 96 67 1 96 1.03 97 68 1 90 1.10 91 69 3 98 2.97 101 70 4 99 3.88 103 71 2 83 2.35 85 72 1 69 1.43 70 73 2 96 2.04 98 74 2 83 2.35 85 75 0 89 0.00 89 76 3 69 4.17 72 77 1 65 1.52 66 78 2 79 2.47 81 79 2 73 2.67 75 80 2 67 2.90 69 81 0 67 0.00 67 82 3 69 4.17 72 83 0 63 0.00 63 84 1 64 1.54 65 85 2 56 3.45 58 86 1 58 1.69 59 87 0 52 0.00 52 88 1 48 2.04 49 89 1 53 1.85 54 90 0 53 0.00 53 91 0 53 0.00 53 92 2 54 3.57 56 93 0 52 0.00 52 94 0 55 0.00 55 95 1 47 2.08 48 96 1 49 2.00 50 97 2 42 4.55 44 98 2 49 3.92 51 99 1 44 2.22 45 100 0 31 0.00 31