zr2096_6_s1_R1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 5632 lines in total Total number of methylation call strings processed: 11264 Final Cytosine Methylation Report ================================= Total number of C's analysed: 108650 Total methylated C's in CpG context: 10639 Total methylated C's in CHG context: 779 Total methylated C's in CHH context: 2887 Total C to T conversions in CpG context: 4016 Total C to T conversions in CHG context: 23630 Total C to T conversions in CHH context: 66699 C methylated in CpG context: 72.6% C methylated in CHG context: 3.2% C methylated in CHH context: 4.1%