CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 102 56 64.56 158 2 148 55 72.91 203 3 125 45 73.53 170 4 101 70 59.06 171 5 109 35 75.69 144 6 59 46 56.19 105 7 76 36 67.86 112 8 75 39 65.79 114 9 76 34 69.09 110 10 74 43 63.25 117 11 83 28 74.77 111 12 112 37 75.17 149 13 108 39 73.47 147 14 104 33 75.91 137 15 85 43 66.41 128 16 104 39 72.73 143 17 100 34 74.63 134 18 99 37 72.79 136 19 98 38 72.06 136 20 97 42 69.78 139 21 86 38 69.35 124 22 109 31 77.86 140 23 94 47 66.67 141 24 91 48 65.47 139 25 90 31 74.38 121 26 105 29 78.36 134 27 93 45 67.39 138 28 116 40 74.36 156 29 113 32 77.93 145 30 110 27 80.29 137 31 117 26 81.82 143 32 112 37 75.17 149 33 93 38 70.99 131 34 111 33 77.08 144 35 108 34 76.06 142 36 104 33 75.91 137 37 111 32 77.62 143 38 93 38 70.99 131 39 132 42 75.86 174 40 109 36 75.17 145 41 111 39 74.00 150 42 96 38 71.64 134 43 95 34 73.64 129 44 99 38 72.26 137 45 105 38 73.43 143 46 108 38 73.97 146 47 118 28 80.82 146 48 111 35 76.03 146 49 106 34 75.71 140 50 110 35 75.86 145 51 95 25 79.17 120 52 111 44 71.61 155 53 113 48 70.19 161 54 100 35 74.07 135 55 119 48 71.26 167 56 90 28 76.27 118 57 103 31 76.87 134 58 107 40 72.79 147 59 78 20 79.59 98 60 110 42 72.37 152 61 96 36 72.73 132 62 102 29 77.86 131 63 95 28 77.24 123 64 88 27 76.52 115 65 93 40 69.92 133 66 102 25 80.31 127 67 82 34 70.69 116 68 69 41 62.73 110 69 95 18 84.07 113 70 91 28 76.47 119 71 87 25 77.68 112 72 69 31 69.00 100 73 79 33 70.54 112 74 89 34 72.36 123 75 85 26 76.58 111 76 77 25 75.49 102 77 69 20 77.53 89 78 67 25 72.83 92 79 89 31 74.17 120 80 81 29 73.64 110 81 80 28 74.07 108 82 82 29 73.87 111 83 65 27 70.65 92 84 71 31 69.61 102 85 60 18 76.92 78 86 70 22 76.09 92 87 63 20 75.90 83 88 58 30 65.91 88 89 55 24 69.62 79 90 61 17 78.21 78 91 62 27 69.66 89 92 67 22 75.28 89 93 63 25 71.59 88 94 48 21 69.57 69 95 53 19 73.61 72 96 47 17 73.44 64 97 48 25 65.75 73 98 40 17 70.18 57 99 42 26 61.76 68 100 7 15 31.82 22 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 63 325 16.24 388 2 33 115 22.30 148 3 44 184 19.30 228 4 14 228 5.79 242 5 8 273 2.85 281 6 11 292 3.63 303 7 6 193 3.02 199 8 9 211 4.09 220 9 5 191 2.55 196 10 7 187 3.61 194 11 12 182 6.19 194 12 5 189 2.58 194 13 4 211 1.86 215 14 9 241 3.60 250 15 5 223 2.19 228 16 6 204 2.86 210 17 8 237 3.27 245 18 5 219 2.23 224 19 5 216 2.26 221 20 7 218 3.11 225 21 5 216 2.26 221 22 6 186 3.12 192 23 6 246 2.38 252 24 6 230 2.54 236 25 3 213 1.39 216 26 3 216 1.37 219 27 5 261 1.88 266 28 3 210 1.41 213 29 8 247 3.14 255 30 4 235 1.67 239 31 1 219 0.45 220 32 6 225 2.60 231 33 4 221 1.78 225 34 2 229 0.87 231 35 5 220 2.22 225 36 4 248 1.59 252 37 4 238 1.65 242 38 0 209 0.00 209 39 4 236 1.67 240 40 4 241 1.63 245 41 3 246 1.20 249 42 3 243 1.22 246 43 6 219 2.67 225 44 1 248 0.40 249 45 8 225 3.43 233 46 3 222 1.33 225 47 2 232 0.85 234 48 6 215 2.71 221 49 4 217 1.81 221 50 5 237 2.07 242 51 2 219 0.90 221 52 5 231 2.12 236 53 5 219 2.23 224 54 3 233 1.27 236 55 4 208 1.89 212 56 2 244 0.81 246 57 3 221 1.34 224 58 8 191 4.02 199 59 4 236 1.67 240 60 7 188 3.59 195 61 4 223 1.76 227 62 6 217 2.69 223 63 8 232 3.33 240 64 2 188 1.05 190 65 7 191 3.54 198 66 2 196 1.01 198 67 7 198 3.41 205 68 5 166 2.92 171 69 3 212 1.40 215 70 2 211 0.94 213 71 7 173 3.89 180 72 5 194 2.51 199 73 9 163 5.23 172 74 3 165 1.79 168 75 3 177 1.67 180 76 4 179 2.19 183 77 3 171 1.72 174 78 2 160 1.23 162 79 4 180 2.17 184 80 4 137 2.84 141 81 6 155 3.73 161 82 8 152 5.00 160 83 2 158 1.25 160 84 5 156 3.11 161 85 6 155 3.73 161 86 6 140 4.11 146 87 1 134 0.74 135 88 6 144 4.00 150 89 1 141 0.70 142 90 2 136 1.45 138 91 3 142 2.07 145 92 4 129 3.01 133 93 3 113 2.59 116 94 4 134 2.90 138 95 3 113 2.59 116 96 6 103 5.50 109 97 4 119 3.25 123 98 3 130 2.26 133 99 6 105 5.41 111 100 2 88 2.22 90 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 167 263 38.84 430 2 136 346 28.22 482 3 127 321 28.35 448 4 87 394 18.09 481 5 35 483 6.76 518 6 40 632 5.95 672 7 34 657 4.92 691 8 37 681 5.15 718 9 41 630 6.11 671 10 31 649 4.56 680 11 26 614 4.06 640 12 32 646 4.72 678 13 24 643 3.60 667 14 34 608 5.30 642 15 21 599 3.39 620 16 37 603 5.78 640 17 25 609 3.94 634 18 33 608 5.15 641 19 28 617 4.34 645 20 27 616 4.20 643 21 33 610 5.13 643 22 23 639 3.47 662 23 17 644 2.57 661 24 27 631 4.10 658 25 20 628 3.09 648 26 24 648 3.57 672 27 21 611 3.32 632 28 26 641 3.90 667 29 28 674 3.99 702 30 15 646 2.27 661 31 29 683 4.07 712 32 29 615 4.50 644 33 23 681 3.27 704 34 20 656 2.96 676 35 20 673 2.89 693 36 22 610 3.48 632 37 24 652 3.55 676 38 16 672 2.33 688 39 18 633 2.76 651 40 24 685 3.39 709 41 24 697 3.33 721 42 16 681 2.30 697 43 17 678 2.45 695 44 24 678 3.42 702 45 16 628 2.48 644 46 25 650 3.70 675 47 30 633 4.52 663 48 16 647 2.41 663 49 14 672 2.04 686 50 17 633 2.62 650 51 13 650 1.96 663 52 14 664 2.06 678 53 17 651 2.54 668 54 17 612 2.70 629 55 14 609 2.25 623 56 21 644 3.16 665 57 23 623 3.56 646 58 14 668 2.05 682 59 19 632 2.92 651 60 21 609 3.33 630 61 18 578 3.02 596 62 14 618 2.22 632 63 10 554 1.77 564 64 15 607 2.41 622 65 15 556 2.63 571 66 19 537 3.42 556 67 15 556 2.63 571 68 17 557 2.96 574 69 9 572 1.55 581 70 19 551 3.33 570 71 12 557 2.11 569 72 10 491 2.00 501 73 14 551 2.48 565 74 10 517 1.90 527 75 12 498 2.35 510 76 12 492 2.38 504 77 18 491 3.54 509 78 10 494 1.98 504 79 18 474 3.66 492 80 17 447 3.66 464 81 15 456 3.18 471 82 9 430 2.05 439 83 11 411 2.61 422 84 10 403 2.42 413 85 10 421 2.32 431 86 9 424 2.08 433 87 23 380 5.71 403 88 17 389 4.19 406 89 7 387 1.78 394 90 11 395 2.71 406 91 7 418 1.65 425 92 8 407 1.93 415 93 12 393 2.96 405 94 10 349 2.79 359 95 9 321 2.73 330 96 12 367 3.17 379 97 6 342 1.72 348 98 9 330 2.65 339 99 13 309 4.04 322 100 3 300 0.99 303 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 52 27 65.82 79 2 59 24 71.08 83 3 62 30 67.39 92 4 34 31 52.31 65 5 33 13 71.74 46 6 25 13 65.79 38 7 19 23 45.24 42 8 26 12 68.42 38 9 24 10 70.59 34 10 24 18 57.14 42 11 29 8 78.38 37 12 29 18 61.70 47 13 42 18 70.00 60 14 34 17 66.67 51 15 33 12 73.33 45 16 22 15 59.46 37 17 19 5 79.17 24 18 34 11 75.56 45 19 33 9 78.57 42 20 23 14 62.16 37 21 33 11 75.00 44 22 24 12 66.67 36 23 23 11 67.65 34 24 25 17 59.52 42 25 36 11 76.60 47 26 29 11 72.50 40 27 26 15 63.41 41 28 27 10 72.97 37 29 18 10 64.29 28 30 26 11 70.27 37 31 19 10 65.52 29 32 23 3 88.46 26 33 20 8 71.43 28 34 21 8 72.41 29 35 26 8 76.47 34 36 15 11 57.69 26 37 14 6 70.00 20 38 30 11 73.17 41 39 14 6 70.00 20 40 11 5 68.75 16 41 14 11 56.00 25 42 17 8 68.00 25 43 16 9 64.00 25 44 16 7 69.57 23 45 18 2 90.00 20 46 19 6 76.00 25 47 15 7 68.18 22 48 22 6 78.57 28 49 10 3 76.92 13 50 21 3 87.50 24 51 13 1 92.86 14 52 8 7 53.33 15 53 9 6 60.00 15 54 19 3 86.36 22 55 23 6 79.31 29 56 14 5 73.68 19 57 11 4 73.33 15 58 8 3 72.73 11 59 17 7 70.83 24 60 13 7 65.00 20 61 6 3 66.67 9 62 21 1 95.45 22 63 8 1 88.89 9 64 7 6 53.85 13 65 14 2 87.50 16 66 13 4 76.47 17 67 7 4 63.64 11 68 10 5 66.67 15 69 3 1 75.00 4 70 6 5 54.55 11 71 10 3 76.92 13 72 5 3 62.50 8 73 4 0 100.00 4 74 10 3 76.92 13 75 7 2 77.78 9 76 5 2 71.43 7 77 11 3 78.57 14 78 6 2 75.00 8 79 8 2 80.00 10 80 9 0 100.00 9 81 9 2 81.82 11 82 1 3 25.00 4 83 4 1 80.00 5 84 3 1 75.00 4 85 5 2 71.43 7 86 6 0 100.00 6 87 5 0 100.00 5 88 3 1 75.00 4 89 6 3 66.67 9 90 6 0 100.00 6 91 3 1 75.00 4 92 2 0 100.00 2 93 5 1 83.33 6 94 3 0 100.00 3 95 2 1 66.67 3 96 7 1 87.50 8 97 1 2 33.33 3 98 6 0 100.00 6 99 7 2 77.78 9 100 2 0 100.00 2 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 32 182 14.95 214 2 18 62 22.50 80 3 20 84 19.23 104 4 10 66 13.16 76 5 10 149 6.29 159 6 5 128 3.76 133 7 3 67 4.29 70 8 3 69 4.17 72 9 2 70 2.78 72 10 4 77 4.94 81 11 5 78 6.02 83 12 5 78 6.02 83 13 2 80 2.44 82 14 3 87 3.33 90 15 2 78 2.50 80 16 2 60 3.23 62 17 1 71 1.39 72 18 1 60 1.64 61 19 0 83 0.00 83 20 3 66 4.35 69 21 3 51 5.56 54 22 2 63 3.08 65 23 1 60 1.64 61 24 0 51 0.00 51 25 3 62 4.62 65 26 0 49 0.00 49 27 3 58 4.92 61 28 1 52 1.89 53 29 0 48 0.00 48 30 0 53 0.00 53 31 1 39 2.50 40 32 0 38 0.00 38 33 1 67 1.47 68 34 0 45 0.00 45 35 1 50 1.96 51 36 1 50 1.96 51 37 0 38 0.00 38 38 0 39 0.00 39 39 5 43 10.42 48 40 2 38 5.00 40 41 0 28 0.00 28 42 2 30 6.25 32 43 1 35 2.78 36 44 0 36 0.00 36 45 0 35 0.00 35 46 0 32 0.00 32 47 0 40 0.00 40 48 1 28 3.45 29 49 0 37 0.00 37 50 0 25 0.00 25 51 2 24 7.69 26 52 0 24 0.00 24 53 1 29 3.33 30 54 0 24 0.00 24 55 0 28 0.00 28 56 2 26 7.14 28 57 0 26 0.00 26 58 0 29 0.00 29 59 1 23 4.17 24 60 0 22 0.00 22 61 0 31 0.00 31 62 1 24 4.00 25 63 0 17 0.00 17 64 0 21 0.00 21 65 0 23 0.00 23 66 0 22 0.00 22 67 0 22 0.00 22 68 1 17 5.56 18 69 0 16 0.00 16 70 1 20 4.76 21 71 0 15 0.00 15 72 0 16 0.00 16 73 1 21 4.55 22 74 0 19 0.00 19 75 0 21 0.00 21 76 0 19 0.00 19 77 0 12 0.00 12 78 1 15 6.25 16 79 0 15 0.00 15 80 0 11 0.00 11 81 0 10 0.00 10 82 0 14 0.00 14 83 0 16 0.00 16 84 2 8 20.00 10 85 0 16 0.00 16 86 0 10 0.00 10 87 1 12 7.69 13 88 0 14 0.00 14 89 0 9 0.00 9 90 0 12 0.00 12 91 0 11 0.00 11 92 0 21 0.00 21 93 0 9 0.00 9 94 0 7 0.00 7 95 1 10 9.09 11 96 0 9 0.00 9 97 0 7 0.00 7 98 1 9 10.00 10 99 0 13 0.00 13 100 0 7 0.00 7 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 60 138 30.30 198 2 65 180 26.53 245 3 46 149 23.59 195 4 27 160 14.44 187 5 27 219 10.98 246 6 16 245 6.13 261 7 16 304 5.00 320 8 16 286 5.30 302 9 16 264 5.71 280 10 17 238 6.67 255 11 10 238 4.03 248 12 11 210 4.98 221 13 12 231 4.94 243 14 5 227 2.16 232 15 10 211 4.52 221 16 17 209 7.52 226 17 3 191 1.55 194 18 5 217 2.25 222 19 7 184 3.66 191 20 5 193 2.53 198 21 5 170 2.86 175 22 3 163 1.81 166 23 9 180 4.76 189 24 11 151 6.79 162 25 2 157 1.26 159 26 6 155 3.73 161 27 4 159 2.45 163 28 5 143 3.38 148 29 5 148 3.27 153 30 2 143 1.38 145 31 7 149 4.49 156 32 3 152 1.94 155 33 4 149 2.61 153 34 5 146 3.31 151 35 3 159 1.85 162 36 2 134 1.47 136 37 1 132 0.75 133 38 5 126 3.82 131 39 3 126 2.33 129 40 3 131 2.24 134 41 4 142 2.74 146 42 1 125 0.79 126 43 5 119 4.03 124 44 2 100 1.96 102 45 3 101 2.88 104 46 2 129 1.53 131 47 1 114 0.87 115 48 2 109 1.80 111 49 1 96 1.03 97 50 1 95 1.04 96 51 2 91 2.15 93 52 1 105 0.94 106 53 1 92 1.08 93 54 3 77 3.75 80 55 3 86 3.37 89 56 0 90 0.00 90 57 1 87 1.14 88 58 1 99 1.00 100 59 1 80 1.23 81 60 0 82 0.00 82 61 0 72 0.00 72 62 3 86 3.37 89 63 1 90 1.10 91 64 1 68 1.45 69 65 1 63 1.56 64 66 1 62 1.59 63 67 1 78 1.27 79 68 2 68 2.86 70 69 0 70 0.00 70 70 2 66 2.94 68 71 3 64 4.48 67 72 0 58 0.00 58 73 0 60 0.00 60 74 1 53 1.85 54 75 1 54 1.82 55 76 0 52 0.00 52 77 0 59 0.00 59 78 1 53 1.85 54 79 0 50 0.00 50 80 0 39 0.00 39 81 1 47 2.08 48 82 0 57 0.00 57 83 0 36 0.00 36 84 0 41 0.00 41 85 1 37 2.63 38 86 2 44 4.35 46 87 1 40 2.44 41 88 0 38 0.00 38 89 1 38 2.56 39 90 0 38 0.00 38 91 0 31 0.00 31 92 0 30 0.00 30 93 0 31 0.00 31 94 0 30 0.00 30 95 0 30 0.00 30 96 0 32 0.00 32 97 0 22 0.00 22 98 0 28 0.00 28 99 1 33 2.94 34 100 0 25 0.00 25