zr2096_5_s1_R1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 5290 lines in total Total number of methylation call strings processed: 10580 Final Cytosine Methylation Report ================================= Total number of C's analysed: 108849 Total methylated C's in CpG context: 9241 Total methylated C's in CHG context: 818 Total methylated C's in CHH context: 3155 Total C to T conversions in CpG context: 4521 Total C to T conversions in CHG context: 22943 Total C to T conversions in CHH context: 68171 C methylated in CpG context: 67.1% C methylated in CHG context: 3.4% C methylated in CHH context: 4.4%