CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 100 50 66.67 150 2 131 46 74.01 177 3 115 70 62.16 185 4 76 52 59.38 128 5 64 54 54.24 118 6 54 42 56.25 96 7 39 48 44.83 87 8 69 36 65.71 105 9 67 39 63.21 106 10 81 30 72.97 111 11 70 42 62.50 112 12 84 42 66.67 126 13 97 45 68.31 142 14 68 40 62.96 108 15 65 36 64.36 101 16 75 31 70.75 106 17 102 39 72.34 141 18 72 51 58.54 123 19 77 34 69.37 111 20 87 28 75.65 115 21 86 43 66.67 129 22 99 34 74.44 133 23 92 31 74.80 123 24 83 44 65.35 127 25 101 47 68.24 148 26 77 43 64.17 120 27 86 43 66.67 129 28 91 41 68.94 132 29 79 46 63.20 125 30 91 36 71.65 127 31 88 39 69.29 127 32 88 40 68.75 128 33 78 31 71.56 109 34 87 37 70.16 124 35 99 57 63.46 156 36 88 33 72.73 121 37 95 41 69.85 136 38 80 49 62.02 129 39 93 35 72.66 128 40 88 42 67.69 130 41 81 38 68.07 119 42 85 40 68.00 125 43 91 35 72.22 126 44 77 38 66.96 115 45 91 47 65.94 138 46 86 40 68.25 126 47 92 32 74.19 124 48 97 39 71.32 136 49 88 34 72.13 122 50 90 39 69.77 129 51 95 26 78.51 121 52 88 34 72.13 122 53 80 31 72.07 111 54 87 46 65.41 133 55 67 42 61.47 109 56 85 42 66.93 127 57 75 43 63.56 118 58 81 33 71.05 114 59 90 42 68.18 132 60 72 30 70.59 102 61 81 46 63.78 127 62 85 32 72.65 117 63 94 24 79.66 118 64 86 36 70.49 122 65 88 43 67.18 131 66 84 46 64.62 130 67 66 36 64.71 102 68 90 40 69.23 130 69 65 35 65.00 100 70 78 43 64.46 121 71 79 30 72.48 109 72 74 37 66.67 111 73 67 33 67.00 100 74 72 32 69.23 104 75 69 26 72.63 95 76 69 30 69.70 99 77 74 28 72.55 102 78 60 19 75.95 79 79 63 36 63.64 99 80 78 39 66.67 117 81 74 28 72.55 102 82 53 35 60.23 88 83 50 26 65.79 76 84 44 37 54.32 81 85 55 36 60.44 91 86 59 28 67.82 87 87 57 27 67.86 84 88 54 27 66.67 81 89 62 25 71.26 87 90 48 25 65.75 73 91 55 25 68.75 80 92 51 23 68.92 74 93 56 29 65.88 85 94 58 23 71.60 81 95 48 21 69.57 69 96 44 29 60.27 73 97 50 26 65.79 76 98 45 29 60.81 74 99 30 18 62.50 48 100 9 15 37.50 24 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 73 333 17.98 406 2 31 126 19.75 157 3 24 159 13.11 183 4 16 221 6.75 237 5 4 256 1.54 260 6 12 309 3.74 321 7 9 185 4.64 194 8 4 184 2.13 188 9 10 184 5.15 194 10 4 188 2.08 192 11 5 186 2.62 191 12 4 195 2.01 199 13 5 165 2.94 170 14 7 185 3.65 192 15 3 190 1.55 193 16 11 182 5.70 193 17 2 203 0.98 205 18 4 193 2.03 197 19 5 199 2.45 204 20 5 200 2.44 205 21 5 200 2.44 205 22 6 160 3.61 166 23 12 203 5.58 215 24 7 203 3.33 210 25 6 231 2.53 237 26 8 188 4.08 196 27 7 181 3.72 188 28 9 228 3.80 237 29 9 194 4.43 203 30 4 176 2.22 180 31 6 216 2.70 222 32 4 209 1.88 213 33 5 232 2.11 237 34 4 209 1.88 213 35 2 214 0.93 216 36 5 193 2.53 198 37 5 238 2.06 243 38 7 224 3.03 231 39 1 203 0.49 204 40 4 200 1.96 204 41 6 210 2.78 216 42 8 218 3.54 226 43 4 199 1.97 203 44 7 214 3.17 221 45 5 235 2.08 240 46 5 210 2.33 215 47 3 215 1.38 218 48 4 202 1.94 206 49 3 204 1.45 207 50 3 209 1.42 212 51 7 210 3.23 217 52 5 221 2.21 226 53 8 212 3.64 220 54 5 199 2.45 204 55 5 214 2.28 219 56 7 218 3.11 225 57 2 208 0.95 210 58 4 198 1.98 202 59 4 210 1.87 214 60 5 196 2.49 201 61 4 217 1.81 221 62 5 192 2.54 197 63 7 207 3.27 214 64 4 185 2.12 189 65 5 184 2.65 189 66 4 212 1.85 216 67 7 179 3.76 186 68 4 189 2.07 193 69 3 182 1.62 185 70 2 166 1.19 168 71 5 186 2.62 191 72 4 191 2.05 195 73 5 182 2.67 187 74 6 142 4.05 148 75 6 157 3.68 163 76 5 175 2.78 180 77 3 170 1.73 173 78 10 162 5.81 172 79 5 167 2.91 172 80 5 144 3.36 149 81 6 173 3.35 179 82 3 183 1.61 186 83 3 156 1.89 159 84 3 143 2.05 146 85 3 132 2.22 135 86 3 164 1.80 167 87 6 122 4.69 128 88 5 145 3.33 150 89 7 138 4.83 145 90 6 147 3.92 153 91 3 135 2.17 138 92 4 144 2.70 148 93 7 121 5.47 128 94 4 143 2.72 147 95 5 121 3.97 126 96 3 125 2.34 128 97 5 119 4.03 124 98 4 108 3.57 112 99 6 113 5.04 119 100 2 87 2.25 89 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 138 271 33.74 409 2 140 353 28.40 493 3 106 357 22.89 463 4 80 391 16.99 471 5 48 522 8.42 570 6 39 557 6.54 596 7 37 641 5.46 678 8 31 718 4.14 749 9 33 614 5.10 647 10 34 579 5.55 613 11 27 615 4.21 642 12 26 615 4.06 641 13 30 670 4.29 700 14 28 605 4.42 633 15 32 587 5.17 619 16 27 641 4.04 668 17 31 598 4.93 629 18 34 598 5.38 632 19 27 596 4.33 623 20 27 613 4.22 640 21 25 601 3.99 626 22 30 581 4.91 611 23 26 572 4.35 598 24 20 597 3.24 617 25 27 579 4.46 606 26 26 611 4.08 637 27 22 654 3.25 676 28 23 589 3.76 612 29 28 642 4.18 670 30 20 593 3.26 613 31 20 622 3.12 642 32 17 647 2.56 664 33 32 646 4.72 678 34 19 583 3.16 602 35 23 638 3.48 661 36 15 610 2.40 625 37 31 613 4.81 644 38 17 634 2.61 651 39 16 633 2.47 649 40 18 622 2.81 640 41 17 679 2.44 696 42 15 646 2.27 661 43 20 653 2.97 673 44 18 656 2.67 674 45 27 616 4.20 643 46 19 613 3.01 632 47 14 648 2.11 662 48 19 651 2.84 670 49 23 668 3.33 691 50 17 626 2.64 643 51 25 615 3.91 640 52 17 638 2.60 655 53 23 679 3.28 702 54 11 686 1.58 697 55 21 654 3.11 675 56 13 608 2.09 621 57 13 635 2.01 648 58 23 624 3.55 647 59 21 644 3.16 665 60 19 566 3.25 585 61 20 639 3.03 659 62 20 618 3.13 638 63 22 586 3.62 608 64 14 576 2.37 590 65 25 536 4.46 561 66 13 587 2.17 600 67 15 568 2.57 583 68 16 582 2.68 598 69 22 554 3.82 576 70 18 551 3.16 569 71 16 536 2.90 552 72 15 529 2.76 544 73 18 531 3.28 549 74 22 525 4.02 547 75 12 527 2.23 539 76 18 480 3.61 498 77 14 513 2.66 527 78 9 525 1.69 534 79 15 501 2.91 516 80 12 439 2.66 451 81 16 487 3.18 503 82 19 474 3.85 493 83 19 462 3.95 481 84 10 471 2.08 481 85 15 451 3.22 466 86 18 437 3.96 455 87 15 442 3.28 457 88 14 392 3.45 406 89 18 428 4.04 446 90 13 402 3.13 415 91 19 357 5.05 376 92 17 370 4.39 387 93 16 397 3.87 413 94 13 404 3.12 417 95 15 345 4.17 360 96 15 378 3.82 393 97 12 361 3.22 373 98 19 356 5.07 375 99 12 352 3.30 364 100 11 285 3.72 296 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 45 17 72.58 62 2 42 19 68.85 61 3 59 29 67.05 88 4 48 28 63.16 76 5 36 33 52.17 69 6 18 12 60.00 30 7 25 21 54.35 46 8 24 27 47.06 51 9 31 30 50.82 61 10 32 13 71.11 45 11 35 19 64.81 54 12 40 23 63.49 63 13 19 10 65.52 29 14 29 18 61.70 47 15 29 20 59.18 49 16 29 12 70.73 41 17 34 20 62.96 54 18 27 13 67.50 40 19 22 15 59.46 37 20 25 18 58.14 43 21 34 11 75.56 45 22 25 20 55.56 45 23 23 9 71.88 32 24 22 11 66.67 33 25 22 11 66.67 33 26 23 15 60.53 38 27 25 10 71.43 35 28 21 10 67.74 31 29 24 9 72.73 33 30 27 13 67.50 40 31 19 11 63.33 30 32 22 9 70.97 31 33 25 7 78.12 32 34 19 13 59.38 32 35 29 11 72.50 40 36 29 13 69.05 42 37 20 11 64.52 31 38 13 19 40.62 32 39 19 10 65.52 29 40 18 8 69.23 26 41 17 9 65.38 26 42 26 7 78.79 33 43 18 7 72.00 25 44 14 11 56.00 25 45 18 7 72.00 25 46 17 7 70.83 24 47 17 15 53.12 32 48 12 9 57.14 21 49 12 10 54.55 22 50 14 9 60.87 23 51 6 5 54.55 11 52 19 6 76.00 25 53 14 4 77.78 18 54 12 8 60.00 20 55 14 4 77.78 18 56 12 9 57.14 21 57 8 5 61.54 13 58 17 3 85.00 20 59 9 5 64.29 14 60 12 9 57.14 21 61 15 7 68.18 22 62 9 4 69.23 13 63 20 3 86.96 23 64 6 1 85.71 7 65 9 4 69.23 13 66 10 5 66.67 15 67 6 7 46.15 13 68 8 3 72.73 11 69 9 1 90.00 10 70 7 6 53.85 13 71 5 2 71.43 7 72 7 4 63.64 11 73 5 4 55.56 9 74 11 3 78.57 14 75 11 3 78.57 14 76 6 3 66.67 9 77 6 2 75.00 8 78 7 3 70.00 10 79 5 3 62.50 8 80 8 3 72.73 11 81 8 5 61.54 13 82 7 2 77.78 9 83 4 1 80.00 5 84 6 0 100.00 6 85 2 0 100.00 2 86 5 3 62.50 8 87 6 2 75.00 8 88 2 1 66.67 3 89 3 1 75.00 4 90 4 0 100.00 4 91 8 2 80.00 10 92 6 3 66.67 9 93 3 0 100.00 3 94 4 3 57.14 7 95 6 2 75.00 8 96 6 3 66.67 9 97 2 1 66.67 3 98 3 2 60.00 5 99 5 1 83.33 6 100 1 0 100.00 1 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 42 216 16.28 258 2 15 49 23.44 64 3 10 82 10.87 92 4 9 95 8.65 104 5 5 122 3.94 127 6 2 133 1.48 135 7 3 104 2.80 107 8 2 93 2.11 95 9 0 87 0.00 87 10 2 68 2.86 70 11 7 87 7.45 94 12 4 82 4.65 86 13 3 55 5.17 58 14 2 74 2.63 76 15 4 66 5.71 70 16 4 83 4.60 87 17 4 71 5.33 75 18 1 71 1.39 72 19 4 67 5.63 71 20 4 70 5.41 74 21 2 68 2.86 70 22 0 58 0.00 58 23 2 55 3.51 57 24 4 65 5.80 69 25 2 62 3.12 64 26 0 51 0.00 51 27 0 63 0.00 63 28 1 65 1.52 66 29 2 58 3.33 60 30 0 57 0.00 57 31 0 45 0.00 45 32 0 54 0.00 54 33 1 62 1.59 63 34 0 55 0.00 55 35 2 53 3.64 55 36 0 56 0.00 56 37 2 64 3.03 66 38 0 54 0.00 54 39 1 42 2.33 43 40 1 48 2.04 49 41 5 39 11.36 44 42 0 50 0.00 50 43 0 42 0.00 42 44 0 41 0.00 41 45 0 46 0.00 46 46 2 45 4.26 47 47 0 41 0.00 41 48 2 33 5.71 35 49 0 37 0.00 37 50 0 37 0.00 37 51 0 36 0.00 36 52 0 23 0.00 23 53 1 24 4.00 25 54 0 38 0.00 38 55 1 35 2.78 36 56 1 34 2.86 35 57 0 36 0.00 36 58 0 25 0.00 25 59 1 31 3.12 32 60 1 34 2.86 35 61 0 15 0.00 15 62 1 28 3.45 29 63 0 43 0.00 43 64 2 16 11.11 18 65 0 16 0.00 16 66 1 28 3.45 29 67 0 24 0.00 24 68 2 25 7.41 27 69 0 21 0.00 21 70 0 21 0.00 21 71 2 19 9.52 21 72 0 18 0.00 18 73 0 14 0.00 14 74 0 20 0.00 20 75 1 21 4.55 22 76 0 17 0.00 17 77 2 20 9.09 22 78 0 20 0.00 20 79 0 9 0.00 9 80 0 12 0.00 12 81 0 12 0.00 12 82 0 20 0.00 20 83 1 21 4.55 22 84 1 18 5.26 19 85 1 16 5.88 17 86 0 12 0.00 12 87 0 6 0.00 6 88 0 10 0.00 10 89 0 15 0.00 15 90 0 14 0.00 14 91 0 10 0.00 10 92 0 12 0.00 12 93 0 11 0.00 11 94 0 11 0.00 11 95 1 8 11.11 9 96 0 8 0.00 8 97 0 13 0.00 13 98 0 10 0.00 10 99 1 10 9.09 11 100 0 7 0.00 7 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 62 134 31.63 196 2 65 190 25.49 255 3 43 179 19.37 222 4 47 176 21.08 223 5 19 248 7.12 267 6 21 264 7.37 285 7 13 297 4.19 310 8 24 317 7.04 341 9 21 274 7.12 295 10 15 240 5.88 255 11 10 260 3.70 270 12 9 249 3.49 258 13 13 287 4.33 300 14 7 262 2.60 269 15 13 256 4.83 269 16 15 213 6.58 228 17 6 219 2.67 225 18 10 239 4.02 249 19 12 237 4.82 249 20 8 230 3.36 238 21 5 205 2.38 210 22 13 204 5.99 217 23 8 203 3.79 211 24 4 215 1.83 219 25 7 230 2.95 237 26 8 211 3.65 219 27 5 225 2.17 230 28 6 187 3.11 193 29 5 176 2.76 181 30 8 171 4.47 179 31 3 176 1.68 179 32 6 175 3.31 181 33 5 169 2.87 174 34 2 159 1.24 161 35 3 165 1.79 168 36 6 180 3.23 186 37 5 167 2.91 172 38 9 147 5.77 156 39 10 159 5.92 169 40 6 143 4.03 149 41 4 149 2.61 153 42 6 133 4.32 139 43 9 152 5.59 161 44 4 125 3.10 129 45 2 127 1.55 129 46 7 126 5.26 133 47 2 129 1.53 131 48 5 134 3.60 139 49 0 128 0.00 128 50 6 134 4.29 140 51 2 120 1.64 122 52 4 112 3.45 116 53 5 114 4.20 119 54 4 114 3.39 118 55 2 109 1.80 111 56 3 119 2.46 122 57 5 95 5.00 100 58 2 109 1.80 111 59 1 100 0.99 101 60 3 102 2.86 105 61 2 87 2.25 89 62 5 90 5.26 95 63 3 79 3.66 82 64 1 74 1.33 75 65 0 76 0.00 76 66 6 64 8.57 70 67 2 80 2.44 82 68 4 73 5.19 77 69 1 77 1.28 78 70 4 67 5.63 71 71 1 64 1.54 65 72 4 67 5.63 71 73 1 73 1.35 74 74 3 60 4.76 63 75 0 62 0.00 62 76 4 60 6.25 64 77 1 43 2.27 44 78 2 47 4.08 49 79 3 44 6.38 47 80 1 47 2.08 48 81 1 52 1.89 53 82 2 44 4.35 46 83 0 47 0.00 47 84 1 51 1.92 52 85 1 63 1.56 64 86 1 37 2.63 38 87 0 44 0.00 44 88 2 37 5.13 39 89 3 42 6.67 45 90 2 43 4.44 45 91 3 33 8.33 36 92 2 44 4.35 46 93 2 41 4.65 43 94 2 33 5.71 35 95 2 37 5.13 39 96 2 37 5.13 39 97 0 31 0.00 31 98 1 33 2.94 34 99 0 23 0.00 23 100 0 29 0.00 29