zr2096_4_s1_R1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 5532 lines in total Total number of methylation call strings processed: 11064 Final Cytosine Methylation Report ================================= Total number of C's analysed: 107596 Total methylated C's in CpG context: 9238 Total methylated C's in CHG context: 775 Total methylated C's in CHH context: 3214 Total C to T conversions in CpG context: 4906 Total C to T conversions in CHG context: 23383 Total C to T conversions in CHH context: 66080 C methylated in CpG context: 65.3% C methylated in CHG context: 3.2% C methylated in CHH context: 4.6%