CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 83 38 68.60 121 2 131 74 63.90 205 3 122 67 64.55 189 4 91 74 55.15 165 5 62 75 45.26 137 6 41 46 47.13 87 7 49 41 54.44 90 8 57 50 53.27 107 9 62 53 53.91 115 10 67 42 61.47 109 11 70 37 65.42 107 12 108 39 73.47 147 13 83 38 68.60 121 14 88 43 67.18 131 15 75 50 60.00 125 16 86 58 59.72 144 17 98 46 68.06 144 18 84 40 67.74 124 19 73 50 59.35 123 20 97 49 66.44 146 21 87 39 69.05 126 22 85 44 65.89 129 23 91 28 76.47 119 24 96 52 64.86 148 25 88 39 69.29 127 26 83 35 70.34 118 27 82 45 64.57 127 28 87 53 62.14 140 29 94 51 64.83 145 30 85 38 69.11 123 31 91 40 69.47 131 32 91 36 71.65 127 33 89 31 74.17 120 34 93 40 69.92 133 35 107 49 68.59 156 36 92 47 66.19 139 37 74 46 61.67 120 38 103 42 71.03 145 39 87 40 68.50 127 40 79 49 61.72 128 41 92 47 66.19 139 42 85 48 63.91 133 43 83 40 67.48 123 44 106 49 68.39 155 45 95 39 70.90 134 46 112 39 74.17 151 47 87 45 65.91 132 48 96 39 71.11 135 49 87 41 67.97 128 50 96 49 66.21 145 51 97 38 71.85 135 52 94 37 71.76 131 53 88 43 67.18 131 54 93 45 67.39 138 55 81 47 63.28 128 56 99 43 69.72 142 57 77 29 72.64 106 58 101 36 73.72 137 59 71 49 59.17 120 60 72 41 63.72 113 61 92 46 66.67 138 62 74 42 63.79 116 63 87 29 75.00 116 64 68 34 66.67 102 65 69 36 65.71 105 66 77 34 69.37 111 67 74 34 68.52 108 68 67 32 67.68 99 69 84 43 66.14 127 70 79 44 64.23 123 71 82 48 63.08 130 72 66 39 62.86 105 73 81 29 73.64 110 74 68 33 67.33 101 75 74 35 67.89 109 76 60 36 62.50 96 77 78 25 75.73 103 78 79 40 66.39 119 79 49 30 62.03 79 80 65 46 58.56 111 81 47 36 56.63 83 82 63 32 66.32 95 83 70 35 66.67 105 84 57 25 69.51 82 85 53 32 62.35 85 86 55 24 69.62 79 87 78 29 72.90 107 88 55 23 70.51 78 89 61 34 64.21 95 90 58 27 68.24 85 91 54 33 62.07 87 92 49 33 59.76 82 93 51 27 65.38 78 94 45 32 58.44 77 95 41 26 61.19 67 96 42 21 66.67 63 97 48 37 56.47 85 98 40 30 57.14 70 99 41 17 70.69 58 100 10 12 45.45 22 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 75 299 20.05 374 2 34 115 22.82 149 3 32 203 13.62 235 4 14 213 6.17 227 5 10 268 3.60 278 6 4 312 1.27 316 7 4 179 2.19 183 8 7 192 3.52 199 9 4 203 1.93 207 10 5 189 2.58 194 11 9 177 4.84 186 12 4 205 1.91 209 13 3 228 1.30 231 14 2 224 0.88 226 15 5 208 2.35 213 16 9 213 4.05 222 17 7 242 2.81 249 18 6 218 2.68 224 19 4 209 1.88 213 20 4 221 1.78 225 21 5 224 2.18 229 22 4 216 1.82 220 23 8 217 3.56 225 24 4 233 1.69 237 25 6 231 2.53 237 26 7 203 3.33 210 27 6 233 2.51 239 28 5 217 2.25 222 29 9 224 3.86 233 30 2 201 0.99 203 31 3 227 1.30 230 32 5 225 2.17 230 33 5 226 2.16 231 34 8 228 3.39 236 35 5 219 2.23 224 36 6 217 2.69 223 37 3 235 1.26 238 38 4 227 1.73 231 39 6 220 2.65 226 40 3 245 1.21 248 41 5 233 2.10 238 42 4 215 1.83 219 43 4 211 1.86 215 44 2 210 0.94 212 45 3 225 1.32 228 46 2 226 0.88 228 47 4 206 1.90 210 48 4 199 1.97 203 49 3 238 1.24 241 50 2 219 0.90 221 51 9 223 3.88 232 52 5 197 2.48 202 53 4 218 1.80 222 54 6 210 2.78 216 55 3 211 1.40 214 56 3 195 1.52 198 57 6 222 2.63 228 58 4 191 2.05 195 59 4 172 2.27 176 60 8 177 4.32 185 61 3 195 1.52 198 62 5 197 2.48 202 63 8 190 4.04 198 64 3 195 1.52 198 65 3 181 1.63 184 66 3 207 1.43 210 67 3 180 1.64 183 68 2 199 1.00 201 69 3 169 1.74 172 70 4 175 2.23 179 71 5 205 2.38 210 72 4 168 2.33 172 73 7 184 3.66 191 74 2 185 1.07 187 75 4 176 2.22 180 76 5 157 3.09 162 77 4 154 2.53 158 78 1 160 0.62 161 79 9 195 4.41 204 80 3 140 2.10 143 81 0 173 0.00 173 82 0 155 0.00 155 83 3 139 2.11 142 84 4 152 2.56 156 85 3 161 1.83 164 86 3 153 1.92 156 87 4 143 2.72 147 88 2 139 1.42 141 89 4 137 2.84 141 90 2 147 1.34 149 91 4 130 2.99 134 92 4 156 2.50 160 93 7 124 5.34 131 94 1 142 0.70 143 95 5 128 3.76 133 96 4 105 3.67 109 97 7 114 5.79 121 98 4 117 3.31 121 99 2 127 1.55 129 100 1 79 1.25 80 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 145 281 34.04 426 2 134 343 28.09 477 3 105 341 23.54 446 4 64 435 12.83 499 5 51 513 9.04 564 6 44 580 7.05 624 7 28 676 3.98 704 8 45 683 6.18 728 9 32 653 4.67 685 10 22 673 3.17 695 11 44 632 6.51 676 12 35 604 5.48 639 13 23 644 3.45 667 14 27 584 4.42 611 15 32 627 4.86 659 16 36 577 5.87 613 17 30 572 4.98 602 18 24 581 3.97 605 19 34 597 5.39 631 20 37 627 5.57 664 21 28 599 4.47 627 22 25 595 4.03 620 23 24 566 4.07 590 24 28 566 4.71 594 25 32 621 4.90 653 26 33 643 4.88 676 27 17 627 2.64 644 28 31 684 4.34 715 29 26 673 3.72 699 30 25 616 3.90 641 31 20 605 3.20 625 32 23 645 3.44 668 33 23 654 3.40 677 34 25 660 3.65 685 35 16 659 2.37 675 36 28 663 4.05 691 37 20 674 2.88 694 38 22 643 3.31 665 39 21 683 2.98 704 40 27 628 4.12 655 41 24 640 3.61 664 42 17 646 2.56 663 43 23 665 3.34 688 44 13 686 1.86 699 45 21 679 3.00 700 46 23 686 3.24 709 47 27 642 4.04 669 48 29 616 4.50 645 49 23 636 3.49 659 50 14 619 2.21 633 51 14 621 2.20 635 52 15 646 2.27 661 53 24 638 3.63 662 54 25 627 3.83 652 55 26 601 4.15 627 56 20 660 2.94 680 57 19 564 3.26 583 58 25 578 4.15 603 59 18 619 2.83 637 60 23 541 4.08 564 61 17 556 2.97 573 62 14 577 2.37 591 63 17 568 2.91 585 64 19 566 3.25 585 65 21 579 3.50 600 66 20 529 3.64 549 67 19 501 3.65 520 68 21 544 3.72 565 69 19 519 3.53 538 70 15 551 2.65 566 71 16 502 3.09 518 72 21 479 4.20 500 73 15 503 2.90 518 74 17 495 3.32 512 75 17 509 3.23 526 76 18 497 3.50 515 77 17 478 3.43 495 78 18 498 3.49 516 79 14 457 2.97 471 80 11 482 2.23 493 81 14 463 2.94 477 82 12 441 2.65 453 83 11 439 2.44 450 84 16 445 3.47 461 85 16 406 3.79 422 86 12 413 2.82 425 87 9 440 2.00 449 88 15 412 3.51 427 89 15 408 3.55 423 90 17 393 4.15 410 91 14 381 3.54 395 92 16 314 4.85 330 93 18 336 5.08 354 94 14 369 3.66 383 95 19 338 5.32 357 96 10 329 2.95 339 97 10 358 2.72 368 98 17 292 5.50 309 99 10 337 2.88 347 100 5 263 1.87 268 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 33 34 49.25 67 2 49 36 57.65 85 3 64 45 58.72 109 4 37 36 50.68 73 5 27 27 50.00 54 6 23 24 48.94 47 7 19 20 48.72 39 8 29 21 58.00 50 9 21 21 50.00 42 10 20 12 62.50 32 11 40 13 75.47 53 12 38 23 62.30 61 13 36 17 67.92 53 14 23 19 54.76 42 15 33 16 67.35 49 16 20 14 58.82 34 17 22 21 51.16 43 18 24 12 66.67 36 19 21 9 70.00 30 20 18 16 52.94 34 21 26 20 56.52 46 22 30 16 65.22 46 23 26 11 70.27 37 24 30 13 69.77 43 25 30 13 69.77 43 26 14 10 58.33 24 27 26 16 61.90 42 28 17 13 56.67 30 29 24 7 77.42 31 30 22 11 66.67 33 31 19 3 86.36 22 32 18 8 69.23 26 33 24 8 75.00 32 34 16 13 55.17 29 35 23 16 58.97 39 36 21 9 70.00 30 37 15 11 57.69 26 38 23 9 71.88 32 39 17 9 65.38 26 40 14 8 63.64 22 41 16 7 69.57 23 42 12 10 54.55 22 43 17 11 60.71 28 44 14 5 73.68 19 45 17 5 77.27 22 46 13 6 68.42 19 47 21 8 72.41 29 48 8 4 66.67 12 49 10 6 62.50 16 50 13 6 68.42 19 51 9 8 52.94 17 52 14 5 73.68 19 53 15 6 71.43 21 54 12 6 66.67 18 55 8 1 88.89 9 56 13 4 76.47 17 57 17 8 68.00 25 58 11 7 61.11 18 59 7 5 58.33 12 60 10 5 66.67 15 61 7 1 87.50 8 62 7 3 70.00 10 63 4 2 66.67 6 64 14 3 82.35 17 65 6 3 66.67 9 66 9 10 47.37 19 67 9 5 64.29 14 68 9 5 64.29 14 69 7 1 87.50 8 70 9 5 64.29 14 71 6 4 60.00 10 72 6 6 50.00 12 73 6 2 75.00 8 74 9 3 75.00 12 75 9 3 75.00 12 76 6 4 60.00 10 77 4 4 50.00 8 78 10 2 83.33 12 79 10 2 83.33 12 80 4 3 57.14 7 81 7 4 63.64 11 82 8 4 66.67 12 83 4 0 100.00 4 84 8 3 72.73 11 85 3 6 33.33 9 86 4 2 66.67 6 87 6 4 60.00 10 88 7 2 77.78 9 89 3 7 30.00 10 90 2 5 28.57 7 91 1 0 100.00 1 92 4 2 66.67 6 93 4 3 57.14 7 94 5 2 71.43 7 95 6 1 85.71 7 96 3 0 100.00 3 97 2 3 40.00 5 98 5 2 71.43 7 99 2 2 50.00 4 100 0 2 0.00 2 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 37 179 17.13 216 2 15 58 20.55 73 3 16 78 17.02 94 4 13 113 10.32 126 5 11 124 8.15 135 6 4 136 2.86 140 7 3 87 3.33 90 8 2 77 2.53 79 9 2 76 2.56 78 10 6 75 7.41 81 11 13 90 12.62 103 12 2 70 2.78 72 13 5 59 7.81 64 14 3 79 3.66 82 15 7 70 9.09 77 16 3 76 3.80 79 17 1 69 1.43 70 18 4 83 4.60 87 19 2 83 2.35 85 20 1 53 1.85 54 21 1 69 1.43 70 22 5 71 6.58 76 23 2 59 3.28 61 24 1 65 1.52 66 25 0 66 0.00 66 26 4 57 6.56 61 27 1 40 2.44 41 28 1 42 2.33 43 29 2 77 2.53 79 30 5 56 8.20 61 31 0 48 0.00 48 32 0 51 0.00 51 33 0 36 0.00 36 34 0 56 0.00 56 35 0 50 0.00 50 36 0 54 0.00 54 37 1 54 1.82 55 38 0 38 0.00 38 39 0 45 0.00 45 40 1 52 1.89 53 41 1 46 2.13 47 42 0 35 0.00 35 43 1 31 3.12 32 44 4 37 9.76 41 45 0 35 0.00 35 46 0 31 0.00 31 47 0 28 0.00 28 48 1 35 2.78 36 49 1 40 2.44 41 50 1 28 3.45 29 51 1 35 2.78 36 52 1 38 2.56 39 53 1 38 2.56 39 54 0 33 0.00 33 55 0 23 0.00 23 56 0 25 0.00 25 57 0 30 0.00 30 58 2 31 6.06 33 59 0 23 0.00 23 60 0 27 0.00 27 61 0 22 0.00 22 62 1 18 5.26 19 63 1 21 4.55 22 64 0 24 0.00 24 65 0 28 0.00 28 66 0 17 0.00 17 67 0 25 0.00 25 68 0 19 0.00 19 69 0 20 0.00 20 70 0 16 0.00 16 71 0 21 0.00 21 72 0 17 0.00 17 73 0 15 0.00 15 74 1 20 4.76 21 75 0 14 0.00 14 76 1 18 5.26 19 77 0 12 0.00 12 78 1 20 4.76 21 79 0 10 0.00 10 80 1 17 5.56 18 81 0 17 0.00 17 82 0 15 0.00 15 83 1 9 10.00 10 84 0 21 0.00 21 85 0 5 0.00 5 86 0 9 0.00 9 87 0 12 0.00 12 88 0 10 0.00 10 89 0 15 0.00 15 90 1 13 7.14 14 91 0 8 0.00 8 92 1 14 6.67 15 93 0 11 0.00 11 94 0 11 0.00 11 95 1 14 6.67 15 96 0 10 0.00 10 97 0 5 0.00 5 98 1 7 12.50 8 99 0 6 0.00 6 100 0 10 0.00 10 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 67 141 32.21 208 2 51 166 23.50 217 3 43 169 20.28 212 4 30 178 14.42 208 5 30 196 13.27 226 6 24 259 8.48 283 7 16 265 5.69 281 8 30 269 10.03 299 9 11 276 3.83 287 10 16 250 6.02 266 11 19 214 8.15 233 12 12 229 4.98 241 13 3 212 1.40 215 14 5 222 2.20 227 15 10 237 4.05 247 16 29 215 11.89 244 17 4 213 1.84 217 18 11 193 5.39 204 19 10 196 4.85 206 20 12 183 6.15 195 21 7 165 4.07 172 22 6 211 2.76 217 23 9 184 4.66 193 24 10 198 4.81 208 25 7 164 4.09 171 26 6 179 3.24 185 27 6 185 3.14 191 28 8 172 4.44 180 29 8 164 4.65 172 30 5 157 3.09 162 31 6 174 3.33 180 32 6 140 4.11 146 33 6 166 3.49 172 34 7 141 4.73 148 35 5 151 3.21 156 36 5 150 3.23 155 37 6 157 3.68 163 38 3 149 1.97 152 39 1 114 0.87 115 40 3 126 2.33 129 41 3 130 2.26 133 42 3 116 2.52 119 43 3 119 2.46 122 44 8 122 6.15 130 45 4 113 3.42 117 46 3 136 2.16 139 47 3 111 2.63 114 48 6 108 5.26 114 49 5 112 4.27 117 50 4 105 3.67 109 51 2 107 1.83 109 52 1 102 0.97 103 53 3 91 3.19 94 54 5 97 4.90 102 55 2 82 2.38 84 56 3 75 3.85 78 57 2 81 2.41 83 58 2 83 2.35 85 59 1 75 1.32 76 60 2 84 2.33 86 61 1 66 1.49 67 62 0 83 0.00 83 63 3 77 3.75 80 64 5 68 6.85 73 65 0 86 0.00 86 66 5 66 7.04 71 67 5 66 7.04 71 68 0 63 0.00 63 69 1 71 1.39 72 70 2 61 3.17 63 71 1 62 1.59 63 72 2 55 3.51 57 73 3 62 4.62 65 74 1 63 1.56 64 75 3 52 5.45 55 76 2 49 3.92 51 77 2 53 3.64 55 78 2 46 4.17 48 79 3 46 6.12 49 80 1 52 1.89 53 81 0 56 0.00 56 82 0 45 0.00 45 83 3 39 7.14 42 84 4 47 7.84 51 85 1 43 2.27 44 86 2 44 4.35 46 87 2 33 5.71 35 88 1 41 2.38 42 89 2 45 4.26 47 90 3 28 9.68 31 91 1 42 2.33 43 92 1 41 2.38 42 93 1 40 2.44 41 94 2 32 5.88 34 95 1 33 2.94 34 96 2 31 6.06 33 97 0 28 0.00 28 98 1 28 3.45 29 99 0 28 0.00 28 100 2 26 7.14 28