zr2096_2_s1_R1_bismark_bt2.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 5451 lines in total Total number of methylation call strings processed: 5451 Final Cytosine Methylation Report ================================= Total number of C's analysed: 86892 Total methylated C's in CpG context: 8081 Total methylated C's in CHG context: 711 Total methylated C's in CHH context: 3049 Total C to T conversions in CpG context: 3617 Total C to T conversions in CHG context: 19399 Total C to T conversions in CHH context: 52035 C methylated in CpG context: 69.1% C methylated in CHG context: 3.5% C methylated in CHH context: 5.5%