CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 93 41 69.40 134 2 135 45 75.00 180 3 100 58 63.29 158 4 77 59 56.62 136 5 62 42 59.62 104 6 47 42 52.81 89 7 71 24 74.74 95 8 59 38 60.82 97 9 73 33 68.87 106 10 81 34 70.43 115 11 83 35 70.34 118 12 94 35 72.87 129 13 92 30 75.41 122 14 87 36 70.73 123 15 88 28 75.86 116 16 97 37 72.39 134 17 86 41 67.72 127 18 89 46 65.93 135 19 92 32 74.19 124 20 108 40 72.97 148 21 84 28 75.00 112 22 91 32 73.98 123 23 69 35 66.35 104 24 89 40 68.99 129 25 94 31 75.20 125 26 101 33 75.37 134 27 84 40 67.74 124 28 102 26 79.69 128 29 94 34 73.44 128 30 93 30 75.61 123 31 99 44 69.23 143 32 99 31 76.15 130 33 108 42 72.00 150 34 85 28 75.22 113 35 99 41 70.71 140 36 104 37 73.76 141 37 79 32 71.17 111 38 102 44 69.86 146 39 91 37 71.09 128 40 94 39 70.68 133 41 95 37 71.97 132 42 101 46 68.71 147 43 96 42 69.57 138 44 92 26 77.97 118 45 90 47 65.69 137 46 96 43 69.06 139 47 84 26 76.36 110 48 84 41 67.20 125 49 98 39 71.53 137 50 83 31 72.81 114 51 71 38 65.14 109 52 84 42 66.67 126 53 71 33 68.27 104 54 83 30 73.45 113 55 94 36 72.31 130 56 90 48 65.22 138 57 58 29 66.67 87 58 78 36 68.42 114 59 77 42 64.71 119 60 78 36 68.42 114 61 76 42 64.41 118 62 76 29 72.38 105 63 69 28 71.13 97 64 75 32 70.09 107 65 76 32 70.37 108 66 80 30 72.73 110 67 88 27 76.52 115 68 65 31 67.71 96 69 69 31 69.00 100 70 74 22 77.08 96 71 81 39 67.50 120 72 73 34 68.22 107 73 69 24 74.19 93 74 60 33 64.52 93 75 55 22 71.43 77 76 70 23 75.27 93 77 61 33 64.89 94 78 57 21 73.08 78 79 51 19 72.86 70 80 53 21 71.62 74 81 57 27 67.86 84 82 52 18 74.29 70 83 58 33 63.74 91 84 70 28 71.43 98 85 52 18 74.29 70 86 49 26 65.33 75 87 47 27 63.51 74 88 57 26 68.67 83 89 52 31 62.65 83 90 38 23 62.30 61 91 55 24 69.62 79 92 49 18 73.13 67 93 40 19 67.80 59 94 50 23 68.49 73 95 40 27 59.70 67 96 49 22 69.01 71 97 32 34 48.48 66 98 28 17 62.22 45 99 36 22 62.07 58 100 11 13 45.83 24 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 72 307 19.00 379 2 28 113 19.86 141 3 24 179 11.82 203 4 17 204 7.69 221 5 8 246 3.15 254 6 6 289 2.03 295 7 7 180 3.74 187 8 7 179 3.76 186 9 7 177 3.80 184 10 10 174 5.43 184 11 12 179 6.28 191 12 12 201 5.63 213 13 11 202 5.16 213 14 8 200 3.85 208 15 6 200 2.91 206 16 7 192 3.52 199 17 6 212 2.75 218 18 7 208 3.26 215 19 10 196 4.85 206 20 6 178 3.26 184 21 7 249 2.73 256 22 8 205 3.76 213 23 2 204 0.97 206 24 2 198 1.00 200 25 3 227 1.30 230 26 9 204 4.23 213 27 4 211 1.86 215 28 6 188 3.09 194 29 3 239 1.24 242 30 3 196 1.51 199 31 3 212 1.40 215 32 2 185 1.07 187 33 6 205 2.84 211 34 5 244 2.01 249 35 3 203 1.46 206 36 8 211 3.65 219 37 10 219 4.37 229 38 1 206 0.48 207 39 11 198 5.26 209 40 6 207 2.82 213 41 4 196 2.00 200 42 2 229 0.87 231 43 3 215 1.38 218 44 6 192 3.03 198 45 4 194 2.02 198 46 2 242 0.82 244 47 2 177 1.12 179 48 6 213 2.74 219 49 8 219 3.52 227 50 8 211 3.65 219 51 7 204 3.32 211 52 5 224 2.18 229 53 5 190 2.56 195 54 4 164 2.38 168 55 5 206 2.37 211 56 5 181 2.69 186 57 6 199 2.93 205 58 2 213 0.93 215 59 5 182 2.67 187 60 6 189 3.08 195 61 5 174 2.79 179 62 7 175 3.85 182 63 3 194 1.52 197 64 5 195 2.50 200 65 6 154 3.75 160 66 5 178 2.73 183 67 3 176 1.68 179 68 6 175 3.31 181 69 3 154 1.91 157 70 5 178 2.73 183 71 3 158 1.86 161 72 4 162 2.41 166 73 5 159 3.05 164 74 4 149 2.61 153 75 1 172 0.58 173 76 5 144 3.36 149 77 4 149 2.61 153 78 6 147 3.92 153 79 2 141 1.40 143 80 4 136 2.86 140 81 8 145 5.23 153 82 4 124 3.12 128 83 5 142 3.40 147 84 3 132 2.22 135 85 5 141 3.42 146 86 3 144 2.04 147 87 6 142 4.05 148 88 4 130 2.99 134 89 6 119 4.80 125 90 6 115 4.96 121 91 3 129 2.27 132 92 3 124 2.36 127 93 2 97 2.02 99 94 3 108 2.70 111 95 1 106 0.93 107 96 7 118 5.60 125 97 3 99 2.94 102 98 3 92 3.16 95 99 4 88 4.35 92 100 0 77 0.00 77 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 122 254 32.45 376 2 139 295 32.03 434 3 96 275 25.88 371 4 82 353 18.85 435 5 44 444 9.02 488 6 40 493 7.50 533 7 45 581 7.19 626 8 37 599 5.82 636 9 33 551 5.65 584 10 34 570 5.63 604 11 27 564 4.57 591 12 37 576 6.04 613 13 37 549 6.31 586 14 29 532 5.17 561 15 33 518 5.99 551 16 26 499 4.95 525 17 36 533 6.33 569 18 30 488 5.79 518 19 33 517 6.00 550 20 29 597 4.63 626 21 26 523 4.74 549 22 29 513 5.35 542 23 37 551 6.29 588 24 34 544 5.88 578 25 37 568 6.12 605 26 21 564 3.59 585 27 32 565 5.36 597 28 29 515 5.33 544 29 21 535 3.78 556 30 26 558 4.45 584 31 24 586 3.93 610 32 20 520 3.70 540 33 34 551 5.81 585 34 33 584 5.35 617 35 28 599 4.47 627 36 31 576 5.11 607 37 28 567 4.71 595 38 23 608 3.65 631 39 28 564 4.73 592 40 33 571 5.46 604 41 36 555 6.09 591 42 18 559 3.12 577 43 25 546 4.38 571 44 25 584 4.11 609 45 19 558 3.29 577 46 28 570 4.68 598 47 30 529 5.37 559 48 25 516 4.62 541 49 21 570 3.55 591 50 17 560 2.95 577 51 29 539 5.11 568 52 29 522 5.26 551 53 17 533 3.09 550 54 23 560 3.95 583 55 19 541 3.39 560 56 25 520 4.59 545 57 29 565 4.88 594 58 21 544 3.72 565 59 21 526 3.84 547 60 22 507 4.16 529 61 23 519 4.24 542 62 20 535 3.60 555 63 23 486 4.52 509 64 27 447 5.70 474 65 16 478 3.24 494 66 15 467 3.11 482 67 24 449 5.07 473 68 14 429 3.16 443 69 15 489 2.98 504 70 13 469 2.70 482 71 12 456 2.56 468 72 18 461 3.76 479 73 13 444 2.84 457 74 22 436 4.80 458 75 15 433 3.35 448 76 14 414 3.27 428 77 11 427 2.51 438 78 9 398 2.21 407 79 6 395 1.50 401 80 7 403 1.71 410 81 12 359 3.23 371 82 12 356 3.26 368 83 12 378 3.08 390 84 16 375 4.09 391 85 10 355 2.74 365 86 6 349 1.69 355 87 12 337 3.44 349 88 7 307 2.23 314 89 12 324 3.57 336 90 16 305 4.98 321 91 7 342 2.01 349 92 9 317 2.76 326 93 11 310 3.43 321 94 11 284 3.73 295 95 11 268 3.94 279 96 13 270 4.59 283 97 12 276 4.17 288 98 9 260 3.35 269 99 12 226 5.04 238 100 7 212 3.20 219 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 27 19 58.70 46 2 47 19 71.21 66 3 30 24 55.56 54 4 31 25 55.36 56 5 29 25 53.70 54 6 20 17 54.05 37 7 16 16 50.00 32 8 18 12 60.00 30 9 28 13 68.29 41 10 22 19 53.66 41 11 23 10 69.70 33 12 21 16 56.76 37 13 37 10 78.72 47 14 27 12 69.23 39 15 28 9 75.68 37 16 21 22 48.84 43 17 19 13 59.38 32 18 32 14 69.57 46 19 21 6 77.78 27 20 17 12 58.62 29 21 25 12 67.57 37 22 28 13 68.29 41 23 16 11 59.26 27 24 19 8 70.37 27 25 23 9 71.88 32 26 17 7 70.83 24 27 20 11 64.52 31 28 23 10 69.70 33 29 21 5 80.77 26 30 15 5 75.00 20 31 19 5 79.17 24 32 16 4 80.00 20 33 14 6 70.00 20 34 16 5 76.19 21 35 19 7 73.08 26 36 15 5 75.00 20 37 18 7 72.00 25 38 15 9 62.50 24 39 15 10 60.00 25 40 16 3 84.21 19 41 9 9 50.00 18 42 14 9 60.87 23 43 11 9 55.00 20 44 14 7 66.67 21 45 9 7 56.25 16 46 7 3 70.00 10 47 10 4 71.43 14 48 12 6 66.67 18 49 14 5 73.68 19 50 5 5 50.00 10 51 11 6 64.71 17 52 12 5 70.59 17 53 13 1 92.86 14 54 13 5 72.22 18 55 5 6 45.45 11 56 6 4 60.00 10 57 11 5 68.75 16 58 7 6 53.85 13 59 10 2 83.33 12 60 7 4 63.64 11 61 11 2 84.62 13 62 11 0 100.00 11 63 4 3 57.14 7 64 7 3 70.00 10 65 9 2 81.82 11 66 10 2 83.33 12 67 16 0 100.00 16 68 5 2 71.43 7 69 4 3 57.14 7 70 5 3 62.50 8 71 5 0 100.00 5 72 4 3 57.14 7 73 7 0 100.00 7 74 4 1 80.00 5 75 9 2 81.82 11 76 4 3 57.14 7 77 8 3 72.73 11 78 4 4 50.00 8 79 2 1 66.67 3 80 2 2 50.00 4 81 3 2 60.00 5 82 9 4 69.23 13 83 2 4 33.33 6 84 2 0 100.00 2 85 2 0 100.00 2 86 2 0 100.00 2 87 2 3 40.00 5 88 1 3 25.00 4 89 7 0 100.00 7 90 2 4 33.33 6 91 1 1 50.00 2 92 2 3 40.00 5 93 5 3 62.50 8 94 0 4 0.00 4 95 1 2 33.33 3 96 1 1 50.00 2 97 3 2 60.00 5 98 3 0 100.00 3 99 0 3 0.00 3 100 0 0 0 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 22 150 12.79 172 2 12 43 21.82 55 3 18 61 22.78 79 4 8 86 8.51 94 5 9 96 8.57 105 6 5 105 4.55 110 7 2 46 4.17 48 8 1 42 2.33 43 9 3 70 4.11 73 10 6 75 7.41 81 11 13 60 17.81 73 12 1 63 1.56 64 13 4 56 6.67 60 14 2 54 3.57 56 15 3 45 6.25 48 16 6 42 12.50 48 17 4 59 6.35 63 18 2 54 3.57 56 19 4 49 7.55 53 20 0 50 0.00 50 21 0 50 0.00 50 22 2 42 4.55 44 23 1 66 1.49 67 24 1 45 2.17 46 25 3 41 6.82 44 26 3 51 5.56 54 27 2 45 4.26 47 28 1 56 1.75 57 29 2 27 6.90 29 30 2 36 5.26 38 31 0 38 0.00 38 32 3 38 7.32 41 33 0 36 0.00 36 34 0 36 0.00 36 35 1 32 3.03 33 36 2 36 5.26 38 37 3 31 8.82 34 38 0 34 0.00 34 39 0 32 0.00 32 40 2 23 8.00 25 41 1 32 3.03 33 42 4 26 13.33 30 43 0 23 0.00 23 44 0 32 0.00 32 45 1 29 3.33 30 46 1 25 3.85 26 47 0 24 0.00 24 48 0 29 0.00 29 49 1 15 6.25 16 50 3 24 11.11 27 51 0 24 0.00 24 52 0 15 0.00 15 53 1 23 4.17 24 54 0 25 0.00 25 55 1 25 3.85 26 56 1 18 5.26 19 57 1 12 7.69 13 58 0 17 0.00 17 59 1 13 7.14 14 60 1 21 4.55 22 61 1 20 4.76 21 62 0 19 0.00 19 63 1 13 7.14 14 64 0 25 0.00 25 65 0 24 0.00 24 66 0 9 0.00 9 67 0 12 0.00 12 68 0 19 0.00 19 69 0 14 0.00 14 70 1 14 6.67 15 71 0 11 0.00 11 72 0 18 0.00 18 73 0 12 0.00 12 74 1 11 8.33 12 75 0 11 0.00 11 76 0 12 0.00 12 77 0 10 0.00 10 78 0 13 0.00 13 79 0 6 0.00 6 80 0 8 0.00 8 81 0 10 0.00 10 82 0 8 0.00 8 83 1 11 8.33 12 84 0 8 0.00 8 85 0 8 0.00 8 86 0 11 0.00 11 87 0 10 0.00 10 88 0 4 0.00 4 89 0 10 0.00 10 90 0 10 0.00 10 91 1 8 11.11 9 92 1 11 8.33 12 93 0 6 0.00 6 94 0 7 0.00 7 95 0 5 0.00 5 96 0 9 0.00 9 97 0 9 0.00 9 98 0 7 0.00 7 99 0 4 0.00 4 100 0 7 0.00 7 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 56 121 31.64 177 2 57 167 25.45 224 3 54 140 27.84 194 4 39 148 20.86 187 5 22 183 10.73 205 6 16 193 7.66 209 7 15 227 6.20 242 8 16 215 6.93 231 9 9 215 4.02 224 10 9 190 4.52 199 11 15 188 7.39 203 12 16 150 9.64 166 13 12 168 6.67 180 14 7 156 4.29 163 15 8 169 4.52 177 16 12 149 7.45 161 17 6 145 3.97 151 18 10 149 6.29 159 19 4 150 2.60 154 20 7 127 5.22 134 21 8 136 5.56 144 22 6 113 5.04 119 23 9 141 6.00 150 24 5 129 3.73 134 25 6 123 4.65 129 26 3 129 2.27 132 27 8 122 6.15 130 28 5 115 4.17 120 29 7 123 5.38 130 30 7 125 5.30 132 31 3 114 2.56 117 32 3 112 2.61 115 33 6 113 5.04 119 34 5 97 4.90 102 35 3 88 3.30 91 36 4 92 4.17 96 37 0 98 0.00 98 38 1 100 0.99 101 39 3 102 2.86 105 40 3 113 2.59 116 41 2 81 2.41 83 42 3 92 3.16 95 43 2 80 2.44 82 44 2 78 2.50 80 45 1 88 1.12 89 46 3 74 3.90 77 47 1 81 1.22 82 48 3 70 4.11 73 49 2 72 2.70 74 50 2 65 2.99 67 51 4 62 6.06 66 52 4 62 6.06 66 53 5 68 6.85 73 54 3 66 4.35 69 55 4 59 6.35 63 56 2 67 2.90 69 57 6 58 9.38 64 58 2 65 2.99 67 59 3 55 5.17 58 60 3 53 5.36 56 61 3 45 6.25 48 62 2 45 4.26 47 63 4 48 7.69 52 64 3 52 5.45 55 65 1 58 1.69 59 66 1 56 1.75 57 67 4 39 9.30 43 68 1 50 1.96 51 69 1 42 2.33 43 70 0 35 0.00 35 71 3 42 6.67 45 72 4 37 9.76 41 73 3 38 7.32 41 74 3 41 6.82 44 75 0 43 0.00 43 76 2 42 4.55 44 77 1 40 2.44 41 78 2 34 5.56 36 79 2 26 7.14 28 80 1 30 3.23 31 81 2 35 5.41 37 82 2 34 5.56 36 83 1 29 3.33 30 84 3 36 7.69 39 85 2 23 8.00 25 86 1 19 5.00 20 87 1 24 4.00 25 88 1 23 4.17 24 89 2 31 6.06 33 90 1 20 4.76 21 91 1 13 7.14 14 92 2 19 9.52 21 93 1 20 4.76 21 94 0 16 0.00 16 95 1 25 3.85 26 96 1 16 5.88 17 97 2 25 7.41 27 98 2 13 13.33 15 99 2 19 9.52 21 100 0 17 0.00 17