CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 48 31 60.76 79 2 57 29 66.28 86 3 43 31 58.11 74 4 38 32 54.29 70 5 28 31 47.46 59 6 19 19 50.00 38 7 20 15 57.14 35 8 18 17 51.43 35 9 22 24 47.83 46 10 25 18 58.14 43 11 34 12 73.91 46 12 40 20 66.67 60 13 34 19 64.15 53 14 36 26 58.06 62 15 27 19 58.70 46 16 35 14 71.43 49 17 29 13 69.05 42 18 41 16 71.93 57 19 40 12 76.92 52 20 38 20 65.52 58 21 46 16 74.19 62 22 29 17 63.04 46 23 45 24 65.22 69 24 31 13 70.45 44 25 44 18 70.97 62 26 45 15 75.00 60 27 38 16 70.37 54 28 50 17 74.63 67 29 40 11 78.43 51 30 35 20 63.64 55 31 34 20 62.96 54 32 39 20 66.10 59 33 34 21 61.82 55 34 38 12 76.00 50 35 32 27 54.24 59 36 48 14 77.42 62 37 50 13 79.37 63 38 47 14 77.05 61 39 39 29 57.35 68 40 28 17 62.22 45 41 55 18 75.34 73 42 35 13 72.92 48 43 40 28 58.82 68 44 48 13 78.69 61 45 47 18 72.31 65 46 43 17 71.67 60 47 39 23 62.90 62 48 34 17 66.67 51 49 38 16 70.37 54 50 37 16 69.81 53 51 46 10 82.14 56 52 41 21 66.13 62 53 48 16 75.00 64 54 30 13 69.77 43 55 38 13 74.51 51 56 49 20 71.01 69 57 39 10 79.59 49 58 51 15 77.27 66 59 47 11 81.03 58 60 33 16 67.35 49 61 42 10 80.77 52 62 32 13 71.11 45 63 42 14 75.00 56 64 42 18 70.00 60 65 41 11 78.85 52 66 38 14 73.08 52 67 42 13 76.36 55 68 44 11 80.00 55 69 44 13 77.19 57 70 40 21 65.57 61 71 44 10 81.48 54 72 42 20 67.74 62 73 30 16 65.22 46 74 32 16 66.67 48 75 39 12 76.47 51 76 27 11 71.05 38 77 43 14 75.44 57 78 33 20 62.26 53 79 32 10 76.19 42 80 31 16 65.96 47 81 31 17 64.58 48 82 36 15 70.59 51 83 38 13 74.51 51 84 28 16 63.64 44 85 34 17 66.67 51 86 31 8 79.49 39 87 29 13 69.05 42 88 25 14 64.10 39 89 26 15 63.41 41 90 35 12 74.47 47 91 15 9 62.50 24 92 27 15 64.29 42 93 23 9 71.88 32 94 32 9 78.05 41 95 17 14 54.84 31 96 22 15 59.46 37 97 24 12 66.67 36 98 21 11 65.62 32 99 15 13 53.57 28 100 6 9 40.00 15 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 20 142 12.35 162 2 16 48 25.00 64 3 16 75 17.58 91 4 4 88 4.35 92 5 9 112 7.44 121 6 3 123 2.38 126 7 2 81 2.41 83 8 6 69 8.00 75 9 8 75 9.64 83 10 4 73 5.19 77 11 8 83 8.79 91 12 2 77 2.53 79 13 1 84 1.18 85 14 1 88 1.12 89 15 6 77 7.23 83 16 6 94 6.00 100 17 4 98 3.92 102 18 5 86 5.49 91 19 1 75 1.32 76 20 2 92 2.13 94 21 1 97 1.02 98 22 2 96 2.04 98 23 0 86 0.00 86 24 5 100 4.76 105 25 3 74 3.90 77 26 2 73 2.67 75 27 1 89 1.11 90 28 3 91 3.19 94 29 1 95 1.04 96 30 2 97 2.02 99 31 1 94 1.05 95 32 1 84 1.18 85 33 2 95 2.06 97 34 2 97 2.02 99 35 1 105 0.94 106 36 2 94 2.08 96 37 2 85 2.30 87 38 1 93 1.06 94 39 2 110 1.79 112 40 3 82 3.53 85 41 2 72 2.70 74 42 2 93 2.11 95 43 3 94 3.09 97 44 3 87 3.33 90 45 1 99 1.00 100 46 3 95 3.06 98 47 3 98 2.97 101 48 0 101 0.00 101 49 4 101 3.81 105 50 0 80 0.00 80 51 1 89 1.11 90 52 4 107 3.60 111 53 2 108 1.82 110 54 3 76 3.80 79 55 3 93 3.12 96 56 5 111 4.31 116 57 2 90 2.17 92 58 3 85 3.41 88 59 4 103 3.74 107 60 4 99 3.88 103 61 2 88 2.22 90 62 2 87 2.25 89 63 3 81 3.57 84 64 5 82 5.75 87 65 1 91 1.09 92 66 2 87 2.25 89 67 3 80 3.61 83 68 0 86 0.00 86 69 4 78 4.88 82 70 2 78 2.50 80 71 1 93 1.06 94 72 2 73 2.67 75 73 0 76 0.00 76 74 2 81 2.41 83 75 5 85 5.56 90 76 2 83 2.35 85 77 2 84 2.33 86 78 2 77 2.53 79 79 1 75 1.32 76 80 2 77 2.53 79 81 2 80 2.44 82 82 1 84 1.18 85 83 2 69 2.82 71 84 1 65 1.52 66 85 1 77 1.28 78 86 3 71 4.05 74 87 2 70 2.78 72 88 3 69 4.17 72 89 3 68 4.23 71 90 1 58 1.69 59 91 2 62 3.12 64 92 1 75 1.32 76 93 3 71 4.05 74 94 4 71 5.33 75 95 0 64 0.00 64 96 0 56 0.00 56 97 0 62 0.00 62 98 2 57 3.39 59 99 3 67 4.29 70 100 1 44 2.22 45 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 94 122 43.52 216 2 85 161 34.55 246 3 76 138 35.51 214 4 54 182 22.88 236 5 42 218 16.15 260 6 30 261 10.31 291 7 35 299 10.48 334 8 38 310 10.92 348 9 19 244 7.22 263 10 25 261 8.74 286 11 29 272 9.63 301 12 33 282 10.48 315 13 25 264 8.65 289 14 25 240 9.43 265 15 19 249 7.09 268 16 23 248 8.49 271 17 26 247 9.52 273 18 38 268 12.42 306 19 22 271 7.51 293 20 35 267 11.59 302 21 37 260 12.46 297 22 28 251 10.04 279 23 23 267 7.93 290 24 25 265 8.62 290 25 23 290 7.35 313 26 24 279 7.92 303 27 26 267 8.87 293 28 23 296 7.21 319 29 28 286 8.92 314 30 20 281 6.64 301 31 27 285 8.65 312 32 27 262 9.34 289 33 20 283 6.60 303 34 22 308 6.67 330 35 20 293 6.39 313 36 28 281 9.06 309 37 28 267 9.49 295 38 26 294 8.12 320 39 25 281 8.17 306 40 28 273 9.30 301 41 22 310 6.63 332 42 20 287 6.51 307 43 24 295 7.52 319 44 17 273 5.86 290 45 17 285 5.63 302 46 24 271 8.14 295 47 22 297 6.90 319 48 18 278 6.08 296 49 16 299 5.08 315 50 22 264 7.69 286 51 21 288 6.80 309 52 20 269 6.92 289 53 20 261 7.12 281 54 16 286 5.30 302 55 16 298 5.10 314 56 19 265 6.69 284 57 13 274 4.53 287 58 13 300 4.15 313 59 10 282 3.42 292 60 14 256 5.19 270 61 8 267 2.91 275 62 12 257 4.46 269 63 8 251 3.09 259 64 8 257 3.02 265 65 9 258 3.37 267 66 10 252 3.82 262 67 8 254 3.05 262 68 14 239 5.53 253 69 5 255 1.92 260 70 14 240 5.51 254 71 13 246 5.02 259 72 10 230 4.17 240 73 15 230 6.12 245 74 8 242 3.20 250 75 8 213 3.62 221 76 10 231 4.15 241 77 7 218 3.11 225 78 12 205 5.53 217 79 4 201 1.95 205 80 10 199 4.78 209 81 12 212 5.36 224 82 9 194 4.43 203 83 6 189 3.08 195 84 8 201 3.83 209 85 7 198 3.41 205 86 8 219 3.52 227 87 6 202 2.88 208 88 8 204 3.77 212 89 6 215 2.71 221 90 6 191 3.05 197 91 8 207 3.72 215 92 6 185 3.14 191 93 5 181 2.69 186 94 11 175 5.91 186 95 4 191 2.05 195 96 8 195 3.94 203 97 7 167 4.02 174 98 10 164 5.75 174 99 2 167 1.18 169 100 5 149 3.25 154 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 17 11 60.71 28 2 29 13 69.05 42 3 30 12 71.43 42 4 18 13 58.06 31 5 19 16 54.29 35 6 12 10 54.55 22 7 9 7 56.25 16 8 7 11 38.89 18 9 13 7 65.00 20 10 19 7 73.08 26 11 23 3 88.46 26 12 18 5 78.26 23 13 28 9 75.68 37 14 23 7 76.67 30 15 12 11 52.17 23 16 10 5 66.67 15 17 17 10 62.96 27 18 14 9 60.87 23 19 8 8 50.00 16 20 18 11 62.07 29 21 7 8 46.67 15 22 16 8 66.67 24 23 9 6 60.00 15 24 9 6 60.00 15 25 14 5 73.68 19 26 14 4 77.78 18 27 15 3 83.33 18 28 19 3 86.36 22 29 15 6 71.43 21 30 18 3 85.71 21 31 10 8 55.56 18 32 13 4 76.47 17 33 13 7 65.00 20 34 18 4 81.82 22 35 8 1 88.89 9 36 12 5 70.59 17 37 11 4 73.33 15 38 15 4 78.95 19 39 6 6 50.00 12 40 11 4 73.33 15 41 12 7 63.16 19 42 11 5 68.75 16 43 11 7 61.11 18 44 13 5 72.22 18 45 10 5 66.67 15 46 11 6 64.71 17 47 13 3 81.25 16 48 13 5 72.22 18 49 16 6 72.73 22 50 14 2 87.50 16 51 6 0 100.00 6 52 6 4 60.00 10 53 9 3 75.00 12 54 11 4 73.33 15 55 5 5 50.00 10 56 10 1 90.91 11 57 11 4 73.33 15 58 2 2 50.00 4 59 4 2 66.67 6 60 9 4 69.23 13 61 7 0 100.00 7 62 8 3 72.73 11 63 6 5 54.55 11 64 7 4 63.64 11 65 9 3 75.00 12 66 4 3 57.14 7 67 9 6 60.00 15 68 3 4 42.86 7 69 11 4 73.33 15 70 6 2 75.00 8 71 7 0 100.00 7 72 3 2 60.00 5 73 4 4 50.00 8 74 4 3 57.14 7 75 6 2 75.00 8 76 5 1 83.33 6 77 6 1 85.71 7 78 5 3 62.50 8 79 6 2 75.00 8 80 4 2 66.67 6 81 2 4 33.33 6 82 3 3 50.00 6 83 4 0 100.00 4 84 5 2 71.43 7 85 6 2 75.00 8 86 3 3 50.00 6 87 6 0 100.00 6 88 5 4 55.56 9 89 3 1 75.00 4 90 6 0 100.00 6 91 4 2 66.67 6 92 1 2 33.33 3 93 3 1 75.00 4 94 1 3 25.00 4 95 6 1 85.71 7 96 3 2 60.00 5 97 5 1 83.33 6 98 2 0 100.00 2 99 2 2 50.00 4 100 2 0 100.00 2 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 21 90 18.92 111 2 10 19 34.48 29 3 12 31 27.91 43 4 7 52 11.86 59 5 5 75 6.25 80 6 1 61 1.61 62 7 2 32 5.88 34 8 0 51 0.00 51 9 0 48 0.00 48 10 2 28 6.67 30 11 9 49 15.52 58 12 1 33 2.94 34 13 2 31 6.06 33 14 2 47 4.08 49 15 0 38 0.00 38 16 2 31 6.06 33 17 0 35 0.00 35 18 4 47 7.84 51 19 0 36 0.00 36 20 4 35 10.26 39 21 0 39 0.00 39 22 3 32 8.57 35 23 1 36 2.70 37 24 4 37 9.76 41 25 0 23 0.00 23 26 2 35 5.41 37 27 0 37 0.00 37 28 1 26 3.70 27 29 1 25 3.85 26 30 1 34 2.86 35 31 1 19 5.00 20 32 0 32 0.00 32 33 0 38 0.00 38 34 0 31 0.00 31 35 0 23 0.00 23 36 1 19 5.00 20 37 0 33 0.00 33 38 2 21 8.70 23 39 0 26 0.00 26 40 0 22 0.00 22 41 1 22 4.35 23 42 1 26 3.70 27 43 1 27 3.57 28 44 1 35 2.78 36 45 0 22 0.00 22 46 0 24 0.00 24 47 0 17 0.00 17 48 2 19 9.52 21 49 0 27 0.00 27 50 0 19 0.00 19 51 0 23 0.00 23 52 1 10 9.09 11 53 1 20 4.76 21 54 1 19 5.00 20 55 0 16 0.00 16 56 0 15 0.00 15 57 1 16 5.88 17 58 0 17 0.00 17 59 1 11 8.33 12 60 0 20 0.00 20 61 0 25 0.00 25 62 0 17 0.00 17 63 0 12 0.00 12 64 0 14 0.00 14 65 1 17 5.56 18 66 0 14 0.00 14 67 0 16 0.00 16 68 0 16 0.00 16 69 0 15 0.00 15 70 0 12 0.00 12 71 0 11 0.00 11 72 0 11 0.00 11 73 0 17 0.00 17 74 0 7 0.00 7 75 1 10 9.09 11 76 0 16 0.00 16 77 0 19 0.00 19 78 1 9 10.00 10 79 0 10 0.00 10 80 0 10 0.00 10 81 0 12 0.00 12 82 0 8 0.00 8 83 0 13 0.00 13 84 0 9 0.00 9 85 0 6 0.00 6 86 0 8 0.00 8 87 2 7 22.22 9 88 0 15 0.00 15 89 0 6 0.00 6 90 0 10 0.00 10 91 0 15 0.00 15 92 0 6 0.00 6 93 0 13 0.00 13 94 0 10 0.00 10 95 0 7 0.00 7 96 0 8 0.00 8 97 0 7 0.00 7 98 0 7 0.00 7 99 0 5 0.00 5 100 0 4 0.00 4 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 32 86 27.12 118 2 36 73 33.03 109 3 43 78 35.54 121 4 11 88 11.11 99 5 22 116 15.94 138 6 12 154 7.23 166 7 2 169 1.17 171 8 13 157 7.65 170 9 6 112 5.08 118 10 7 137 4.86 144 11 6 100 5.66 106 12 7 115 5.74 122 13 6 120 4.76 126 14 7 116 5.69 123 15 10 117 7.87 127 16 10 114 8.06 124 17 4 122 3.17 126 18 8 109 6.84 117 19 9 113 7.38 122 20 4 105 3.67 109 21 8 107 6.96 115 22 3 89 3.26 92 23 2 117 1.68 119 24 5 106 4.50 111 25 1 109 0.91 110 26 3 103 2.83 106 27 4 99 3.88 103 28 5 124 3.88 129 29 3 77 3.75 80 30 4 97 3.96 101 31 3 102 2.86 105 32 4 73 5.19 77 33 0 83 0.00 83 34 4 92 4.17 96 35 4 89 4.30 93 36 3 86 3.37 89 37 1 75 1.32 76 38 3 78 3.70 81 39 6 87 6.45 93 40 2 71 2.74 73 41 2 103 1.90 105 42 3 64 4.48 67 43 1 72 1.37 73 44 1 70 1.41 71 45 1 74 1.33 75 46 1 72 1.37 73 47 2 68 2.86 70 48 2 64 3.03 66 49 0 67 0.00 67 50 2 67 2.90 69 51 1 67 1.47 68 52 0 62 0.00 62 53 0 63 0.00 63 54 1 56 1.75 57 55 0 64 0.00 64 56 1 64 1.54 65 57 0 52 0.00 52 58 0 45 0.00 45 59 0 58 0.00 58 60 0 57 0.00 57 61 0 52 0.00 52 62 0 63 0.00 63 63 0 43 0.00 43 64 2 54 3.57 56 65 0 50 0.00 50 66 0 55 0.00 55 67 1 51 1.92 52 68 1 35 2.78 36 69 0 51 0.00 51 70 2 39 4.88 41 71 0 44 0.00 44 72 0 39 0.00 39 73 0 49 0.00 49 74 0 49 0.00 49 75 0 46 0.00 46 76 0 36 0.00 36 77 0 33 0.00 33 78 1 36 2.70 37 79 0 43 0.00 43 80 1 36 2.70 37 81 1 37 2.63 38 82 1 45 2.17 46 83 1 40 2.44 41 84 0 27 0.00 27 85 0 24 0.00 24 86 0 30 0.00 30 87 1 41 2.38 42 88 1 32 3.03 33 89 0 21 0.00 21 90 1 25 3.85 26 91 0 25 0.00 25 92 0 26 0.00 26 93 1 27 3.57 28 94 1 33 2.94 34 95 0 27 0.00 27 96 2 34 5.56 36 97 0 21 0.00 21 98 1 33 2.94 34 99 1 35 2.78 36 100 0 19 0.00 19