zr2096_10_s1_R2_bismark_bt2.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 6457 lines in total Total number of methylation call strings processed: 6457 Final Cytosine Methylation Report ================================= Total number of C's analysed: 111568 Total methylated C's in CpG context: 10678 Total methylated C's in CHG context: 827 Total methylated C's in CHH context: 2954 Total C to T conversions in CpG context: 4977 Total C to T conversions in CHG context: 24762 Total C to T conversions in CHH context: 67370 C methylated in CpG context: 68.2% C methylated in CHG context: 3.2% C methylated in CHH context: 4.2%