zr2096_10_s1_R1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 5476 lines in total Total number of methylation call strings processed: 10952 Final Cytosine Methylation Report ================================= Total number of C's analysed: 119437 Total methylated C's in CpG context: 11609 Total methylated C's in CHG context: 914 Total methylated C's in CHH context: 3017 Total C to T conversions in CpG context: 5404 Total C to T conversions in CHG context: 26294 Total C to T conversions in CHH context: 72199 C methylated in CpG context: 68.2% C methylated in CHG context: 3.4% C methylated in CHH context: 4.0%