CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 106 38 73.61 144 2 129 66 66.15 195 3 149 58 71.98 207 4 96 53 64.43 149 5 77 71 52.03 148 6 67 37 64.42 104 7 60 43 58.25 103 8 68 44 60.71 112 9 94 65 59.12 159 10 73 42 63.48 115 11 96 49 66.21 145 12 84 44 65.62 128 13 98 49 66.67 147 14 97 47 67.36 144 15 91 49 65.00 140 16 78 41 65.55 119 17 88 58 60.27 146 18 91 54 62.76 145 19 76 55 58.02 131 20 102 51 66.67 153 21 102 41 71.33 143 22 111 37 75.00 148 23 103 53 66.03 156 24 106 60 63.86 166 25 105 38 73.43 143 26 91 42 68.42 133 27 107 56 65.64 163 28 87 43 66.92 130 29 120 41 74.53 161 30 108 36 75.00 144 31 101 55 64.74 156 32 101 55 64.74 156 33 125 36 77.64 161 34 105 55 65.62 160 35 98 45 68.53 143 36 117 39 75.00 156 37 111 39 74.00 150 38 113 49 69.75 162 39 106 43 71.14 149 40 106 42 71.62 148 41 107 45 70.39 152 42 103 38 73.05 141 43 117 49 70.48 166 44 104 53 66.24 157 45 104 35 74.82 139 46 96 47 67.13 143 47 97 44 68.79 141 48 114 40 74.03 154 49 113 35 76.35 148 50 99 47 67.81 146 51 105 40 72.41 145 52 111 35 76.03 146 53 94 37 71.76 131 54 112 58 65.88 170 55 98 45 68.53 143 56 114 46 71.25 160 57 96 44 68.57 140 58 114 47 70.81 161 59 101 37 73.19 138 60 111 44 71.61 155 61 101 45 69.18 146 62 97 48 66.90 145 63 90 56 61.64 146 64 105 41 71.92 146 65 96 55 63.58 151 66 93 44 67.88 137 67 97 37 72.39 134 68 97 38 71.85 135 69 90 40 69.23 130 70 93 41 69.40 134 71 86 38 69.35 124 72 108 32 77.14 140 73 111 41 73.03 152 74 89 39 69.53 128 75 91 35 72.22 126 76 85 43 66.41 128 77 95 36 72.52 131 78 79 42 65.29 121 79 70 35 66.67 105 80 71 47 60.17 118 81 87 47 64.93 134 82 69 38 64.49 107 83 84 27 75.68 111 84 67 34 66.34 101 85 73 27 73.00 100 86 75 38 66.37 113 87 83 39 68.03 122 88 66 31 68.04 97 89 73 28 72.28 101 90 73 32 69.52 105 91 75 41 64.66 116 92 79 32 71.17 111 93 69 29 70.41 98 94 63 24 72.41 87 95 72 32 69.23 104 96 56 26 68.29 82 97 51 37 57.95 88 98 53 31 63.10 84 99 36 22 62.07 58 100 12 15 44.44 27 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 68 374 15.38 442 2 45 118 27.61 163 3 32 187 14.61 219 4 23 221 9.43 244 5 12 281 4.10 293 6 8 305 2.56 313 7 8 216 3.57 224 8 6 224 2.61 230 9 7 179 3.76 186 10 6 182 3.19 188 11 15 206 6.79 221 12 8 213 3.62 221 13 6 223 2.62 229 14 10 209 4.57 219 15 7 188 3.59 195 16 5 242 2.02 247 17 6 226 2.59 232 18 11 217 4.82 228 19 5 207 2.36 212 20 5 241 2.03 246 21 4 220 1.79 224 22 7 215 3.15 222 23 5 219 2.23 224 24 5 236 2.07 241 25 6 235 2.49 241 26 6 227 2.58 233 27 10 220 4.35 230 28 7 255 2.67 262 29 7 211 3.21 218 30 8 213 3.62 221 31 4 228 1.72 232 32 3 232 1.28 235 33 11 242 4.35 253 34 6 227 2.58 233 35 8 241 3.21 249 36 4 222 1.77 226 37 5 252 1.95 257 38 5 214 2.28 219 39 5 229 2.14 234 40 3 242 1.22 245 41 10 232 4.13 242 42 1 224 0.44 225 43 4 243 1.62 247 44 6 231 2.53 237 45 5 239 2.05 244 46 7 268 2.55 275 47 1 233 0.43 234 48 5 234 2.09 239 49 4 276 1.43 280 50 3 224 1.32 227 51 7 229 2.97 236 52 5 266 1.85 271 53 6 270 2.17 276 54 9 216 4.00 225 55 3 230 1.29 233 56 6 224 2.61 230 57 7 233 2.92 240 58 3 200 1.48 203 59 5 238 2.06 243 60 4 208 1.89 212 61 4 225 1.75 229 62 9 230 3.77 239 63 7 229 2.97 236 64 4 253 1.56 257 65 4 248 1.59 252 66 3 201 1.47 204 67 6 216 2.70 222 68 3 208 1.42 211 69 3 211 1.40 214 70 3 207 1.43 210 71 3 193 1.53 196 72 7 216 3.14 223 73 0 202 0.00 202 74 3 200 1.48 203 75 5 188 2.59 193 76 3 209 1.42 212 77 5 195 2.50 200 78 4 164 2.38 168 79 5 172 2.82 177 80 3 198 1.49 201 81 4 180 2.17 184 82 6 185 3.14 191 83 3 179 1.65 182 84 4 158 2.47 162 85 3 163 1.81 166 86 3 165 1.79 168 87 4 150 2.60 154 88 3 156 1.89 159 89 6 151 3.82 157 90 3 161 1.83 164 91 6 153 3.77 159 92 6 170 3.41 176 93 4 140 2.78 144 94 7 155 4.32 162 95 1 141 0.70 142 96 6 154 3.75 160 97 7 152 4.40 159 98 2 135 1.46 137 99 8 154 4.94 162 100 3 122 2.40 125 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 113 281 28.68 394 2 147 314 31.89 461 3 99 364 21.38 463 4 77 344 18.29 421 5 37 532 6.50 569 6 32 563 5.38 595 7 39 655 5.62 694 8 30 639 4.48 669 9 25 672 3.59 697 10 33 624 5.02 657 11 33 652 4.82 685 12 27 630 4.11 657 13 22 658 3.24 680 14 31 598 4.93 629 15 32 637 4.78 669 16 27 617 4.19 644 17 33 667 4.71 700 18 26 619 4.03 645 19 25 613 3.92 638 20 29 662 4.20 691 21 21 626 3.25 647 22 22 585 3.62 607 23 16 608 2.56 624 24 12 613 1.92 625 25 22 622 3.42 644 26 23 642 3.46 665 27 22 632 3.36 654 28 25 646 3.73 671 29 25 668 3.61 693 30 24 627 3.69 651 31 21 657 3.10 678 32 25 643 3.74 668 33 26 664 3.77 690 34 24 656 3.53 680 35 19 699 2.65 718 36 24 631 3.66 655 37 18 641 2.73 659 38 23 649 3.42 672 39 16 654 2.39 670 40 14 616 2.22 630 41 23 643 3.45 666 42 15 619 2.37 634 43 23 628 3.53 651 44 19 627 2.94 646 45 17 666 2.49 683 46 24 636 3.64 660 47 20 652 2.98 672 48 15 641 2.29 656 49 14 641 2.14 655 50 21 641 3.17 662 51 13 671 1.90 684 52 13 636 2.00 649 53 19 608 3.03 627 54 15 645 2.27 660 55 11 666 1.62 677 56 19 660 2.80 679 57 22 652 3.26 674 58 10 655 1.50 665 59 12 642 1.83 654 60 16 637 2.45 653 61 15 612 2.39 627 62 13 598 2.13 611 63 20 601 3.22 621 64 13 563 2.26 576 65 16 588 2.65 604 66 10 583 1.69 593 67 18 564 3.09 582 68 10 576 1.71 586 69 20 565 3.42 585 70 20 620 3.12 640 71 20 598 3.24 618 72 10 585 1.68 595 73 18 562 3.10 580 74 14 583 2.35 597 75 16 549 2.83 565 76 14 519 2.63 533 77 25 515 4.63 540 78 19 538 3.41 557 79 16 537 2.89 553 80 10 547 1.80 557 81 20 458 4.18 478 82 10 501 1.96 511 83 17 521 3.16 538 84 14 459 2.96 473 85 16 459 3.37 475 86 8 472 1.67 480 87 13 482 2.63 495 88 11 473 2.27 484 89 12 488 2.40 500 90 8 489 1.61 497 91 15 431 3.36 446 92 10 415 2.35 425 93 19 458 3.98 477 94 17 406 4.02 423 95 19 432 4.21 451 96 16 382 4.02 398 97 22 388 5.37 410 98 15 392 3.69 407 99 11 397 2.70 408 100 2 315 0.63 317 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 53 36 59.55 89 2 79 38 67.52 117 3 66 33 66.67 99 4 44 34 56.41 78 5 43 32 57.33 75 6 27 24 52.94 51 7 33 22 60.00 55 8 34 16 68.00 50 9 37 21 63.79 58 10 33 24 57.89 57 11 39 16 70.91 55 12 42 20 67.74 62 13 42 19 68.85 61 14 42 18 70.00 60 15 47 18 72.31 65 16 35 25 58.33 60 17 45 32 58.44 77 18 47 14 77.05 61 19 45 16 73.77 61 20 46 21 68.66 67 21 35 22 61.40 57 22 32 18 64.00 50 23 33 21 61.11 54 24 47 12 79.66 59 25 30 27 52.63 57 26 29 15 65.91 44 27 37 21 63.79 58 28 30 16 65.22 46 29 31 14 68.89 45 30 24 20 54.55 44 31 39 16 70.91 55 32 35 10 77.78 45 33 31 20 60.78 51 34 22 9 70.97 31 35 31 14 68.89 45 36 29 16 64.44 45 37 29 15 65.91 44 38 28 11 71.79 39 39 25 7 78.12 32 40 21 12 63.64 33 41 33 14 70.21 47 42 24 18 57.14 42 43 24 16 60.00 40 44 24 9 72.73 33 45 21 5 80.77 26 46 37 12 75.51 49 47 23 9 71.88 32 48 20 7 74.07 27 49 23 7 76.67 30 50 21 10 67.74 31 51 36 7 83.72 43 52 21 9 70.00 30 53 21 9 70.00 30 54 21 11 65.62 32 55 28 5 84.85 33 56 21 13 61.76 34 57 17 5 77.27 22 58 28 6 82.35 34 59 16 7 69.57 23 60 19 7 73.08 26 61 20 5 80.00 25 62 14 4 77.78 18 63 15 9 62.50 24 64 15 6 71.43 21 65 11 5 68.75 16 66 18 4 81.82 22 67 12 4 75.00 16 68 17 3 85.00 20 69 15 5 75.00 20 70 18 11 62.07 29 71 19 6 76.00 25 72 14 12 53.85 26 73 15 7 68.18 22 74 15 4 78.95 19 75 8 4 66.67 12 76 6 6 50.00 12 77 16 4 80.00 20 78 12 2 85.71 14 79 14 3 82.35 17 80 8 5 61.54 13 81 12 5 70.59 17 82 13 4 76.47 17 83 5 4 55.56 9 84 7 6 53.85 13 85 3 8 27.27 11 86 7 1 87.50 8 87 3 3 50.00 6 88 7 2 77.78 9 89 10 4 71.43 14 90 8 2 80.00 10 91 6 5 54.55 11 92 9 3 75.00 12 93 12 1 92.31 13 94 8 3 72.73 11 95 2 1 66.67 3 96 9 4 69.23 13 97 3 5 37.50 8 98 8 2 80.00 10 99 3 3 50.00 6 100 4 0 100.00 4 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 39 218 15.18 257 2 17 67 20.24 84 3 14 77 15.38 91 4 16 86 15.69 102 5 5 157 3.09 162 6 5 154 3.14 159 7 3 99 2.94 102 8 2 84 2.33 86 9 7 84 7.69 91 10 5 85 5.56 90 11 4 103 3.74 107 12 6 86 6.52 92 13 3 100 2.91 103 14 4 100 3.85 104 15 2 67 2.90 69 16 5 87 5.43 92 17 1 99 1.00 100 18 6 91 6.19 97 19 5 85 5.56 90 20 2 87 2.25 89 21 3 81 3.57 84 22 3 87 3.33 90 23 1 70 1.41 71 24 4 80 4.76 84 25 0 76 0.00 76 26 4 88 4.35 92 27 3 70 4.11 73 28 2 77 2.53 79 29 3 72 4.00 75 30 1 61 1.61 62 31 0 78 0.00 78 32 1 71 1.39 72 33 1 59 1.67 60 34 1 78 1.27 79 35 1 71 1.39 72 36 0 54 0.00 54 37 1 80 1.23 81 38 1 50 1.96 51 39 2 65 2.99 67 40 3 70 4.11 73 41 1 51 1.92 52 42 1 59 1.67 60 43 1 59 1.67 60 44 1 45 2.17 46 45 1 54 1.82 55 46 2 56 3.45 58 47 3 49 5.77 52 48 1 51 1.92 52 49 1 46 2.13 47 50 2 39 4.88 41 51 1 38 2.56 39 52 1 37 2.63 38 53 1 36 2.70 37 54 1 27 3.57 28 55 1 53 1.85 54 56 0 40 0.00 40 57 0 31 0.00 31 58 0 35 0.00 35 59 1 43 2.27 44 60 1 35 2.78 36 61 1 34 2.86 35 62 0 32 0.00 32 63 2 30 6.25 32 64 2 28 6.67 30 65 1 38 2.56 39 66 1 37 2.63 38 67 1 22 4.35 23 68 0 31 0.00 31 69 2 40 4.76 42 70 1 37 2.63 38 71 0 26 0.00 26 72 1 25 3.85 26 73 0 30 0.00 30 74 1 27 3.57 28 75 1 25 3.85 26 76 0 30 0.00 30 77 1 27 3.57 28 78 0 22 0.00 22 79 0 19 0.00 19 80 1 31 3.12 32 81 1 19 5.00 20 82 1 21 4.55 22 83 0 17 0.00 17 84 0 16 0.00 16 85 0 27 0.00 27 86 0 14 0.00 14 87 0 22 0.00 22 88 0 8 0.00 8 89 0 13 0.00 13 90 1 16 5.88 17 91 0 16 0.00 16 92 1 15 6.25 16 93 0 18 0.00 18 94 0 14 0.00 14 95 0 15 0.00 15 96 0 14 0.00 14 97 0 18 0.00 18 98 0 11 0.00 11 99 1 12 7.69 13 100 0 13 0.00 13 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 82 147 35.81 229 2 76 232 24.68 308 3 65 191 25.39 256 4 54 214 20.15 268 5 16 270 5.59 286 6 21 303 6.48 324 7 18 366 4.69 384 8 17 345 4.70 362 9 18 304 5.59 322 10 13 284 4.38 297 11 14 311 4.31 325 12 11 261 4.04 272 13 10 304 3.18 314 14 17 281 5.70 298 15 11 293 3.62 304 16 16 266 5.67 282 17 8 256 3.03 264 18 11 244 4.31 255 19 19 236 7.45 255 20 7 239 2.85 246 21 14 238 5.56 252 22 8 229 3.38 237 23 6 233 2.51 239 24 4 225 1.75 229 25 6 240 2.44 246 26 6 219 2.67 225 27 4 222 1.77 226 28 4 207 1.90 211 29 9 205 4.21 214 30 6 210 2.78 216 31 3 206 1.44 209 32 8 198 3.88 206 33 2 211 0.94 213 34 8 201 3.83 209 35 6 179 3.24 185 36 7 205 3.30 212 37 4 184 2.13 188 38 5 186 2.62 191 39 5 194 2.51 199 40 5 177 2.75 182 41 2 158 1.25 160 42 4 153 2.55 157 43 4 172 2.27 176 44 7 175 3.85 182 45 7 134 4.96 141 46 3 157 1.88 160 47 8 152 5.00 160 48 3 146 2.01 149 49 4 151 2.58 155 50 4 161 2.42 165 51 1 122 0.81 123 52 5 122 3.94 127 53 2 137 1.44 139 54 3 123 2.38 126 55 3 126 2.33 129 56 0 113 0.00 113 57 2 103 1.90 105 58 1 127 0.78 128 59 3 114 2.56 117 60 2 119 1.65 121 61 1 100 0.99 101 62 0 101 0.00 101 63 3 93 3.12 96 64 4 95 4.04 99 65 4 99 3.88 103 66 1 94 1.05 95 67 1 106 0.93 107 68 1 88 1.12 89 69 1 95 1.04 96 70 0 86 0.00 86 71 4 80 4.76 84 72 2 77 2.53 79 73 2 86 2.27 88 74 1 85 1.16 86 75 0 87 0.00 87 76 1 53 1.85 54 77 2 70 2.78 72 78 3 77 3.75 80 79 0 63 0.00 63 80 1 63 1.56 64 81 1 68 1.45 69 82 0 57 0.00 57 83 3 59 4.84 62 84 2 59 3.28 61 85 0 47 0.00 47 86 0 56 0.00 56 87 0 57 0.00 57 88 0 65 0.00 65 89 0 55 0.00 55 90 1 57 1.72 58 91 1 39 2.50 40 92 2 46 4.17 48 93 1 52 1.89 53 94 2 43 4.44 45 95 4 43 8.51 47 96 2 46 4.17 48 97 1 48 2.04 49 98 1 42 2.33 43 99 0 40 0.00 40 100 0 34 0.00 34