Bismark

Bismark Processing Report

zr2096_4_s1_R1.fastq.gz and zr2096_4_s1_R2.fastq.gz

Data processed at 17:36 on 2018-05-08


Alignment

Sequence pairs analysed in total 10000
Paired-end alignments with a unique best hit 5532
Pairs without alignments under any condition 2681
Pairs that did not map uniquely 1787
Genomic sequence context not extractable (edges of chromosomes) 0

Cytosine Methylation

Total C's analysed 177679
Methylated C's in CpG context 15435
Methylated C's in CHG context 1155
Methylated C's in CHH context 5016
Methylated C's in Unknown context 595
Unmethylated C's in CpG context 7999
Unmethylated C's in CHG context 38807
Unmethylated C's in CHH context 109267
Unmethylated C's in Unknown context 2741
Percentage methylation (CpG context) 65.9%
Percentage methylation (CHG context) 2.9%
Percentage methylation (CHH context) 4.4%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 1439 original top strand
CTOT 1326 complementary to original top strand
CTOB 1325 complementary to original bottom strand
OB 1442 original bottom strand