#!/bin/bash
#SBATCH --job-name=offline_snow
#SBATCH --output=/gscratch/scrubbed/lhs3/snow_annotation/prep_egapx_offline_mode.out
#SBATCH --account=coenv
#SBATCH --partition=cpu-g2
#SBATCH --nodes=1
#SBATCH --mem=32G
#SBATCH --cpus-per-task=4
#SBATCH --time=1-00:00:00
#SBATCH --mail-type=END,FAIL
#SBATCH --mail-user=laura.spencer@noaa.gov
#SBATCH --chdir=/gscratch/scrubbed/lhs3/snow_annotation

set -e

# Load Apptainer
module load apptainer

mkdir -p /gscratch/scrubbed/lhs3/snow_annotation/local_cache

# Download files 
singularity exec \
  --bind /gscratch/:/gscratch/ \
  /gscratch/scrubbed/lhs3/snow_annotation/srlab-NCBI-EGAPx.sif \
  python3 /opt/egapx/ui/egapx.py \
  /gscratch/scrubbed/lhs3/snow_annotation/snow.yaml \
  -dl \
  -lc /gscratch/scrubbed/lhs3/snow_annotation/local_cache