long_spanning_reads v2.0.13 (4309)
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Opening /dev/null for reading
[samopen] SAM header is present: 7658 sequences.
Loading reference sequences...
        reference sequences loaded.
Loading junctions...done
Loading deletions...done
Loading insertions...done
Warning: 198440 malformed closure
Warning: 20971556 malformed closure
Warning: 1336336 malformed closure
Warning: 13143544 malformed closure