CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 8581 4887 63.71 13468 2 9339 4625 66.88 13964 3 9307 4615 66.85 13922 4 9100 4301 67.91 13401 5 8887 4356 67.11 13243 6 8902 4183 68.03 13085 7 9312 4521 67.32 13833 8 9144 4171 68.67 13315 9 8997 3988 69.29 12985 10 9450 4190 69.28 13640 11 9281 4202 68.83 13483 12 9265 4136 69.14 13401 13 9721 4144 70.11 13865 14 9691 4167 69.93 13858 15 10081 3986 71.66 14067 16 9918 4149 70.51 14067 17 9783 4265 69.64 14048 18 9841 4251 69.83 14092 19 9746 4064 70.57 13810 20 9905 4163 70.41 14068 21 9803 4007 70.98 13810 22 10059 4053 71.28 14112 23 9780 4032 70.81 13812 24 10064 4142 70.84 14206 25 10179 4242 70.58 14421 26 10087 4184 70.68 14271 27 9956 4146 70.60 14102 28 10068 4057 71.28 14125 29 10036 4054 71.23 14090 30 9972 3967 71.54 13939 31 10182 4198 70.81 14380 32 10255 4047 71.70 14302 33 10055 4197 70.55 14252 34 10191 4216 70.74 14407 35 10122 4085 71.25 14207 36 10150 3887 72.31 14037 37 10180 4082 71.38 14262 38 10109 4078 71.26 14187 39 10024 4112 70.91 14136 40 10068 4023 71.45 14091 41 9886 4017 71.11 13903 42 9765 3960 71.15 13725 43 9713 3988 70.89 13701 44 9567 3951 70.77 13518 45 9713 3792 71.92 13505 46 9670 3896 71.28 13566 47 9533 3959 70.66 13492 48 9343 3885 70.63 13228 49 9421 3834 71.08 13255 50 9196 3768 70.93 12964 51 9010 3828 70.18 12838 52 9006 3787 70.40 12793 53 9061 3755 70.70 12816 54 8923 3687 70.76 12610 55 8828 3631 70.86 12459 56 8708 3677 70.31 12385 57 8645 3542 70.94 12187 58 8650 3569 70.79 12219 59 8309 3509 70.31 11818 60 8200 3469 70.27 11669 61 8055 3413 70.24 11468 62 7968 3465 69.69 11433 63 7936 3398 70.02 11334 64 7759 3387 69.61 11146 65 7725 3303 70.05 11028 66 7563 3268 69.83 10831 67 7536 3212 70.12 10748 68 7282 3221 69.33 10503 69 7151 3087 69.85 10238 70 7282 3094 70.18 10376 71 7061 2995 70.22 10056 72 6666 3092 68.31 9758 73 6876 3006 69.58 9882 74 6534 3038 68.26 9572 75 6374 2926 68.54 9300 76 6145 2779 68.86 8924 77 5812 2748 67.90 8560 78 5533 2541 68.53 8074 79 4428 2125 67.57 6553 80 1967 958 67.25 2925 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 1677 20280 7.64 21957 2 1188 20964 5.36 22152 3 924 21114 4.19 22038 4 804 20885 3.71 21689 5 853 20314 4.03 21167 6 851 20469 3.99 21320 7 738 20579 3.46 21317 8 736 20966 3.39 21702 9 671 20729 3.14 21400 10 683 20554 3.22 21237 11 701 20794 3.26 21495 12 652 20935 3.02 21587 13 620 20588 2.92 21208 14 623 20974 2.88 21597 15 631 21827 2.81 22458 16 596 21461 2.70 22057 17 611 21352 2.78 21963 18 588 21799 2.63 22387 19 570 21495 2.58 22065 20 595 21433 2.70 22028 21 603 21825 2.69 22428 22 557 21503 2.52 22060 23 577 22016 2.55 22593 24 546 22251 2.40 22797 25 558 21833 2.49 22391 26 588 22021 2.60 22609 27 556 22405 2.42 22961 28 521 22178 2.30 22699 29 560 22056 2.48 22616 30 549 22323 2.40 22872 31 539 22175 2.37 22714 32 517 22049 2.29 22566 33 548 22470 2.38 23018 34 457 22141 2.02 22598 35 542 22108 2.39 22650 36 533 21932 2.37 22465 37 522 21616 2.36 22138 38 508 21622 2.30 22130 39 506 22174 2.23 22680 40 454 21825 2.04 22279 41 494 21330 2.26 21824 42 467 21629 2.11 22096 43 434 21043 2.02 21477 44 466 20949 2.18 21415 45 485 21221 2.23 21706 46 460 20826 2.16 21286 47 447 20819 2.10 21266 48 434 20551 2.07 20985 49 404 20036 1.98 20440 50 454 20165 2.20 20619 51 461 20243 2.23 20704 52 418 19675 2.08 20093 53 443 19579 2.21 20022 54 413 19638 2.06 20051 55 420 19248 2.14 19668 56 407 18642 2.14 19049 57 398 19033 2.05 19431 58 436 18559 2.30 18995 59 404 18278 2.16 18682 60 384 18316 2.05 18700 61 367 17709 2.03 18076 62 386 17331 2.18 17717 63 399 17575 2.22 17974 64 375 17326 2.12 17701 65 408 16777 2.37 17185 66 364 16628 2.14 16992 67 341 16383 2.04 16724 68 363 16109 2.20 16472 69 329 16122 2.00 16451 70 313 15532 1.98 15845 71 368 15383 2.34 15751 72 351 15285 2.24 15636 73 344 14892 2.26 15236 74 354 14424 2.40 14778 75 334 14698 2.22 15032 76 328 14084 2.28 14412 77 325 13248 2.39 13573 78 333 12311 2.63 12644 79 252 9650 2.54 9902 80 110 4588 2.34 4698 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 5185 63227 7.58 68412 2 4819 62690 7.14 67509 3 4311 62930 6.41 67241 4 3970 62268 5.99 66238 5 3911 60909 6.03 64820 6 3863 58911 6.15 62774 7 3548 59076 5.67 62624 8 3390 58309 5.49 61699 9 3587 59085 5.72 62672 10 3662 60137 5.74 63799 11 3456 58556 5.57 62012 12 3450 58705 5.55 62155 13 3448 59789 5.45 63237 14 3428 59203 5.47 62631 15 3264 60178 5.14 63442 16 3382 61325 5.23 64707 17 3262 60359 5.13 63621 18 3298 61153 5.12 64451 19 3305 62242 5.04 65547 20 3137 61303 4.87 64440 21 3204 61785 4.93 64989 22 3255 62079 4.98 65334 23 3014 62135 4.63 65149 24 2912 62396 4.46 65308 25 2983 62492 4.56 65475 26 2977 61977 4.58 64954 27 2966 62545 4.53 65511 28 2847 62844 4.33 65691 29 2918 62034 4.49 64952 30 2816 61972 4.35 64788 31 2806 63592 4.23 66398 32 2706 61905 4.19 64611 33 2700 62234 4.16 64934 34 2599 62595 3.99 65194 35 2625 62370 4.04 64995 36 2554 61998 3.96 64552 37 2519 62276 3.89 64795 38 2460 61417 3.85 63877 39 2417 61820 3.76 64237 40 2364 61830 3.68 64194 41 2335 61254 3.67 63589 42 2243 60770 3.56 63013 43 2191 60698 3.48 62889 44 2200 59785 3.55 61985 45 2060 59380 3.35 61440 46 2015 59624 3.27 61639 47 1975 58592 3.26 60567 48 1952 58776 3.21 60728 49 1926 58710 3.18 60636 50 1810 56566 3.10 58376 51 1805 56202 3.11 58007 52 1748 56813 2.98 58561 53 1693 54794 3.00 56487 54 1649 54313 2.95 55962 55 1608 54313 2.88 55921 56 1606 53786 2.90 55392 57 1624 53271 2.96 54895 58 1554 52289 2.89 53843 59 1493 51974 2.79 53467 60 1415 50917 2.70 52332 61 1480 50718 2.84 52198 62 1403 49753 2.74 51156 63 1379 49518 2.71 50897 64 1331 49106 2.64 50437 65 1278 47202 2.64 48480 66 1311 47137 2.71 48448 67 1295 46096 2.73 47391 68 1198 46321 2.52 47519 69 1262 45170 2.72 46432 70 1228 44474 2.69 45702 71 1173 43865 2.60 45038 72 1182 43154 2.67 44336 73 1110 42438 2.55 43548 74 1101 41333 2.59 42434 75 1110 40766 2.65 41876 76 1148 39601 2.82 40749 77 1128 37541 2.92 38669 78 1072 34902 2.98 35974 79 827 28055 2.86 28882 80 326 12661 2.51 12987 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 6263 3736 62.64 9999 2 6039 2996 66.84 9035 3 5446 2974 64.68 8420 4 4887 2640 64.93 7527 5 4793 2503 65.69 7296 6 4725 2469 65.68 7194 7 4945 2605 65.50 7550 8 4639 2343 66.44 6982 9 4670 2227 67.71 6897 10 4664 2224 67.71 6888 11 4741 2320 67.14 7061 12 4391 2101 67.64 6492 13 4521 2059 68.71 6580 14 4399 2111 67.57 6510 15 4490 2040 68.76 6530 16 4401 1988 68.88 6389 17 4276 1907 69.16 6183 18 4031 1825 68.84 5856 19 4080 1909 68.12 5989 20 3786 1839 67.31 5625 21 3846 1803 68.08 5649 22 3812 1718 68.93 5530 23 3742 1686 68.94 5428 24 3687 1664 68.90 5351 25 3704 1623 69.53 5327 26 3453 1568 68.77 5021 27 3411 1520 69.17 4931 28 3466 1504 69.74 4970 29 3328 1494 69.02 4822 30 3216 1505 68.12 4721 31 3207 1401 69.60 4608 32 3132 1423 68.76 4555 33 3192 1352 70.25 4544 34 3208 1380 69.92 4588 35 2981 1315 69.39 4296 36 2890 1227 70.20 4117 37 2956 1231 70.60 4187 38 2832 1219 69.91 4051 39 2795 1180 70.31 3975 40 2826 1184 70.47 4010 41 2691 1123 70.56 3814 42 2542 1123 69.36 3665 43 2455 1066 69.72 3521 44 2468 1036 70.43 3504 45 2406 1041 69.80 3447 46 2349 1025 69.62 3374 47 2244 1006 69.05 3250 48 2242 1012 68.90 3254 49 2118 923 69.65 3041 50 2133 879 70.82 3012 51 2018 853 70.29 2871 52 2003 910 68.76 2913 53 1926 838 69.68 2764 54 1899 853 69.00 2752 55 1935 794 70.91 2729 56 1816 844 68.27 2660 57 1754 789 68.97 2543 58 1762 771 69.56 2533 59 1641 718 69.56 2359 60 1670 754 68.89 2424 61 1599 697 69.64 2296 62 1544 770 66.72 2314 63 1501 676 68.95 2177 64 1471 666 68.83 2137 65 1482 632 70.10 2114 66 1397 630 68.92 2027 67 1340 602 69.00 1942 68 1295 609 68.01 1904 69 1289 590 68.60 1879 70 1284 588 68.59 1872 71 1293 586 68.81 1879 72 1190 588 66.93 1778 73 1179 555 67.99 1734 74 1182 571 67.43 1753 75 1109 547 66.97 1656 76 1011 485 67.58 1496 77 942 479 66.29 1421 78 906 477 65.51 1383 79 875 403 68.47 1278 80 541 299 64.40 840 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 1382 15194 8.34 16576 2 798 13181 5.71 13979 3 707 12890 5.20 13597 4 484 12309 3.78 12793 5 547 11194 4.66 11741 6 564 11355 4.73 11919 7 385 11102 3.35 11487 8 434 11397 3.67 11831 9 397 10459 3.66 10856 10 382 10340 3.56 10722 11 367 10390 3.41 10757 12 354 10148 3.37 10502 13 307 9942 3.00 10249 14 300 9664 3.01 9964 15 295 9924 2.89 10219 16 302 9648 3.04 9950 17 277 9454 2.85 9731 18 250 9385 2.59 9635 19 287 9045 3.08 9332 20 264 8923 2.87 9187 21 209 8557 2.38 8766 22 220 8306 2.58 8526 23 228 8534 2.60 8762 24 231 8377 2.68 8608 25 179 8028 2.18 8207 26 212 7896 2.61 8108 27 198 7862 2.46 8060 28 188 7623 2.41 7811 29 225 7612 2.87 7837 30 172 7207 2.33 7379 31 162 7212 2.20 7374 32 146 6942 2.06 7088 33 168 7180 2.29 7348 34 149 6739 2.16 6888 35 162 6641 2.38 6803 36 137 6520 2.06 6657 37 145 6278 2.26 6423 38 127 6155 2.02 6282 39 128 6128 2.05 6256 40 123 6009 2.01 6132 41 146 5875 2.42 6021 42 121 5712 2.07 5833 43 125 5511 2.22 5636 44 127 5424 2.29 5551 45 108 5473 1.94 5581 46 81 5175 1.54 5256 47 96 5059 1.86 5155 48 109 4989 2.14 5098 49 106 4780 2.17 4886 50 109 4757 2.24 4866 51 93 4557 2.00 4650 52 101 4495 2.20 4596 53 80 4263 1.84 4343 54 75 4238 1.74 4313 55 61 4333 1.39 4394 56 76 4100 1.82 4176 57 78 3962 1.93 4040 58 66 3903 1.66 3969 59 79 3809 2.03 3888 60 85 3717 2.24 3802 61 79 3636 2.13 3715 62 78 3383 2.25 3461 63 57 3439 1.63 3496 64 70 3389 2.02 3459 65 69 3185 2.12 3254 66 59 3084 1.88 3143 67 77 3078 2.44 3155 68 57 3037 1.84 3094 69 63 2924 2.11 2987 70 54 2915 1.82 2969 71 71 2773 2.50 2844 72 53 2715 1.91 2768 73 51 2637 1.90 2688 74 43 2670 1.58 2713 75 54 2577 2.05 2631 76 36 2374 1.49 2410 77 45 2351 1.88 2396 78 37 2066 1.76 2103 79 30 1829 1.61 1859 80 33 1307 2.46 1340 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 4035 48683 7.65 52718 2 3070 40446 7.05 43516 3 2339 38286 5.76 40625 4 1946 36182 5.10 38128 5 1908 34826 5.19 36734 6 2056 32604 5.93 34660 7 1486 32036 4.43 33522 8 1437 31329 4.39 32766 9 1508 30844 4.66 32352 10 1329 30857 4.13 32186 11 1314 29746 4.23 31060 12 1248 29318 4.08 30566 13 1185 29522 3.86 30707 14 1096 28516 3.70 29612 15 1100 28504 3.72 29604 16 1030 28168 3.53 29198 17 973 27568 3.41 28541 18 956 27054 3.41 28010 19 918 26627 3.33 27545 20 845 25762 3.18 26607 21 843 25544 3.19 26387 22 854 24820 3.33 25674 23 769 24245 3.07 25014 24 780 23867 3.16 24647 25 768 23873 3.12 24641 26 717 23139 3.01 23856 27 687 22884 2.91 23571 28 671 22460 2.90 23131 29 597 21921 2.65 22518 30 611 21589 2.75 22200 31 584 21564 2.64 22148 32 540 20953 2.51 21493 33 524 20329 2.51 20853 34 551 20015 2.68 20566 35 507 19690 2.51 20197 36 444 19546 2.22 19990 37 462 19077 2.36 19539 38 415 18501 2.19 18916 39 441 18327 2.35 18768 40 408 18062 2.21 18470 41 393 17433 2.20 17826 42 356 16998 2.05 17354 43 363 16787 2.12 17150 44 364 16167 2.20 16531 45 366 15528 2.30 15894 46 337 15661 2.11 15998 47 304 15399 1.94 15703 48 312 15235 2.01 15547 49 329 14982 2.15 15311 50 315 14226 2.17 14541 51 260 13781 1.85 14041 52 278 13668 1.99 13946 53 260 13183 1.93 13443 54 273 12689 2.11 12962 55 301 12686 2.32 12987 56 261 12287 2.08 12548 57 282 12296 2.24 12578 58 246 11697 2.06 11943 59 251 11466 2.14 11717 60 224 11311 1.94 11535 61 216 10962 1.93 11178 62 205 10661 1.89 10866 63 220 10393 2.07 10613 64 216 10402 2.03 10618 65 194 9914 1.92 10108 66 186 9701 1.88 9887 67 191 9686 1.93 9877 68 242 9364 2.52 9606 69 199 9012 2.16 9211 70 194 8563 2.22 8757 71 165 8522 1.90 8687 72 183 8492 2.11 8675 73 166 8095 2.01 8261 74 203 7829 2.53 8032 75 161 7704 2.05 7865 76 185 7524 2.40 7709 77 148 7294 1.99 7442 78 150 6801 2.16 6951 79 127 5917 2.10 6044 80 91 4141 2.15 4232