@ Wed Mar 14 13:31:22 2018: reading reference /Volumes/Serine/wd/18-03-14/GCF_002022765.2_C_virginica-3.0_genomic.fna ...
@ Wed Mar 14 13:31:53 2018: reading /Volumes/Serine/wd/18-03-14/10_32_S32_L001-bsmap_out_Cv3.sam ...
[samopen] SAM header is present: 11 sequences.
@ Wed Mar 14 13:32:03 2018: combining CpG methylation from both strands ...
@ Wed Mar 14 13:32:43 2018: writing /Volumes/Serine/wd/18-03-14/methratio-out10_32_S32.txt ...
@ Wed Mar 14 13:35:19 2018: done.
@ Wed Mar 14 13:35:20 2018: reading reference /Volumes/Serine/wd/18-03-14/GCF_002022765.2_C_virginica-3.0_genomic.fna ...
@ Wed Mar 14 13:35:43 2018: reading /Volumes/Serine/wd/18-03-14/11_37_S37_L001-bsmap_out_Cv3.sam ...
[samopen] SAM header is present: 11 sequences.
@ Wed Mar 14 13:35:55 2018: combining CpG methylation from both strands ...
@ Wed Mar 14 13:36:38 2018: writing /Volumes/Serine/wd/18-03-14/methratio-out11_37_S37.txt ...
@ Wed Mar 14 13:39:17 2018: done.
@ Wed Mar 14 13:39:18 2018: reading reference /Volumes/Serine/wd/18-03-14/GCF_002022765.2_C_virginica-3.0_genomic.fna ...
@ Wed Mar 14 13:39:41 2018: reading /Volumes/Serine/wd/18-03-14/12_38_S38_L001-bsmap_out_Cv3.sam ...
[samopen] SAM header is present: 11 sequences.
@ Wed Mar 14 13:39:55 2018: combining CpG methylation from both strands ...
@ Wed Mar 14 13:40:35 2018: writing /Volumes/Serine/wd/18-03-14/methratio-out12_38_S38.txt ...
@ Wed Mar 14 13:43:15 2018: done.
@ Wed Mar 14 13:43:16 2018: reading reference /Volumes/Serine/wd/18-03-14/GCF_002022765.2_C_virginica-3.0_genomic.fna ...
@ Wed Mar 14 13:43:39 2018: reading /Volumes/Serine/wd/18-03-14/13_33_S33_L001-bsmap_out_Cv3.sam ...
[samopen] SAM header is present: 11 sequences.
@ Wed Mar 14 13:43:50 2018: combining CpG methylation from both strands ...
@ Wed Mar 14 13:44:32 2018: writing /Volumes/Serine/wd/18-03-14/methratio-out13_33_S33.txt ...
@ Wed Mar 14 13:47:10 2018: done.
@ Wed Mar 14 13:47:11 2018: reading reference /Volumes/Serine/wd/18-03-14/GCF_002022765.2_C_virginica-3.0_genomic.fna ...
@ Wed Mar 14 13:47:34 2018: reading /Volumes/Serine/wd/18-03-14/14_34_S34_L001-bsmap_out_Cv3.sam ...
[samopen] SAM header is present: 11 sequences.
@ Wed Mar 14 13:47:47 2018: combining CpG methylation from both strands ...
@ Wed Mar 14 13:48:27 2018: writing /Volumes/Serine/wd/18-03-14/methratio-out14_34_S34.txt ...
@ Wed Mar 14 13:51:07 2018: done.
@ Wed Mar 14 13:51:07 2018: reading reference /Volumes/Serine/wd/18-03-14/GCF_002022765.2_C_virginica-3.0_genomic.fna ...
@ Wed Mar 14 13:51:31 2018: reading /Volumes/Serine/wd/18-03-14/15_39_S39_L001-bsmap_out_Cv3.sam ...
[samopen] SAM header is present: 11 sequences.
@ Wed Mar 14 13:51:42 2018: combining CpG methylation from both strands ...
@ Wed Mar 14 13:52:24 2018: writing /Volumes/Serine/wd/18-03-14/methratio-out15_39_S39.txt ...
@ Wed Mar 14 13:55:03 2018: done.
@ Wed Mar 14 13:55:04 2018: reading reference /Volumes/Serine/wd/18-03-14/GCF_002022765.2_C_virginica-3.0_genomic.fna ...
@ Wed Mar 14 13:55:28 2018: reading /Volumes/Serine/wd/18-03-14/16_40_S40_L001-bsmap_out_Cv3.sam ...
[samopen] SAM header is present: 11 sequences.
@ Wed Mar 14 13:55:42 2018: combining CpG methylation from both strands ...
@ Wed Mar 14 13:56:23 2018: writing /Volumes/Serine/wd/18-03-14/methratio-out16_40_S40.txt ...
@ Wed Mar 14 13:59:04 2018: done.
@ Wed Mar 14 13:59:05 2018: reading reference /Volumes/Serine/wd/18-03-14/GCF_002022765.2_C_virginica-3.0_genomic.fna ...
@ Wed Mar 14 13:59:29 2018: reading /Volumes/Serine/wd/18-03-14/17_9_S9_L001-bsmap_out_Cv3.sam ...
[samopen] SAM header is present: 11 sequences.
@ Wed Mar 14 13:59:31 2018: combining CpG methylation from both strands ...
@ Wed Mar 14 14:00:12 2018: writing /Volumes/Serine/wd/18-03-14/methratio-out17_9_S9.txt ...
@ Wed Mar 14 14:02:36 2018: done.
@ Wed Mar 14 14:02:37 2018: reading reference /Volumes/Serine/wd/18-03-14/GCF_002022765.2_C_virginica-3.0_genomic.fna ...
@ Wed Mar 14 14:03:01 2018: reading /Volumes/Serine/wd/18-03-14/18_10_S10_L001-bsmap_out_Cv3.sam ...
[samopen] SAM header is present: 11 sequences.
@ Wed Mar 14 14:03:07 2018: combining CpG methylation from both strands ...
@ Wed Mar 14 14:03:48 2018: writing /Volumes/Serine/wd/18-03-14/methratio-out18_10_S10.txt ...
@ Wed Mar 14 14:06:26 2018: done.
@ Wed Mar 14 14:06:27 2018: reading reference /Volumes/Serine/wd/18-03-14/GCF_002022765.2_C_virginica-3.0_genomic.fna ...
@ Wed Mar 14 14:06:50 2018: reading /Volumes/Serine/wd/18-03-14/19_7_S7_L001-bsmap_out_Cv3.sam ...
[samopen] SAM header is present: 11 sequences.
@ Wed Mar 14 14:06:55 2018: combining CpG methylation from both strands ...
@ Wed Mar 14 14:07:37 2018: writing /Volumes/Serine/wd/18-03-14/methratio-out19_7_S7.txt ...
@ Wed Mar 14 14:10:06 2018: done.
@ Wed Mar 14 14:10:07 2018: reading reference /Volumes/Serine/wd/18-03-14/GCF_002022765.2_C_virginica-3.0_genomic.fna ...
@ Wed Mar 14 14:10:31 2018: reading /Volumes/Serine/wd/18-03-14/1_25_S25_L001-bsmap_out_Cv3.sam ...
[samopen] SAM header is present: 11 sequences.
@ Wed Mar 14 14:10:34 2018: combining CpG methylation from both strands ...
@ Wed Mar 14 14:11:14 2018: writing /Volumes/Serine/wd/18-03-14/methratio-out1_25_S25.txt ...
@ Wed Mar 14 14:13:39 2018: done.
@ Wed Mar 14 14:13:40 2018: reading reference /Volumes/Serine/wd/18-03-14/GCF_002022765.2_C_virginica-3.0_genomic.fna ...
@ Wed Mar 14 14:14:03 2018: reading /Volumes/Serine/wd/18-03-14/20_8_S8_L001-bsmap_out_Cv3.sam ...
[samopen] SAM header is present: 11 sequences.
@ Wed Mar 14 14:14:08 2018: combining CpG methylation from both strands ...
@ Wed Mar 14 14:14:49 2018: writing /Volumes/Serine/wd/18-03-14/methratio-out20_8_S8.txt ...
@ Wed Mar 14 14:17:12 2018: done.
@ Wed Mar 14 14:17:13 2018: reading reference /Volumes/Serine/wd/18-03-14/GCF_002022765.2_C_virginica-3.0_genomic.fna ...
@ Wed Mar 14 14:17:36 2018: reading /Volumes/Serine/wd/18-03-14/2_26_S26_L001-bsmap_out_Cv3.sam ...
[samopen] SAM header is present: 11 sequences.
@ Wed Mar 14 14:17:37 2018: combining CpG methylation from both strands ...
@ Wed Mar 14 14:18:17 2018: writing /Volumes/Serine/wd/18-03-14/methratio-out2_26_S26.txt ...
@ Wed Mar 14 14:20:31 2018: done.
@ Wed Mar 14 14:20:32 2018: reading reference /Volumes/Serine/wd/18-03-14/GCF_002022765.2_C_virginica-3.0_genomic.fna ...
@ Wed Mar 14 14:20:55 2018: reading /Volumes/Serine/wd/18-03-14/3_27_S27_L001-bsmap_out_Cv3.sam ...
[samopen] SAM header is present: 11 sequences.
@ Wed Mar 14 14:20:55 2018: combining CpG methylation from both strands ...
@ Wed Mar 14 14:21:36 2018: writing /Volumes/Serine/wd/18-03-14/methratio-out3_27_S27.txt ...
@ Wed Mar 14 14:23:57 2018: done.
@ Wed Mar 14 14:23:57 2018: reading reference /Volumes/Serine/wd/18-03-14/GCF_002022765.2_C_virginica-3.0_genomic.fna ...
@ Wed Mar 14 14:24:21 2018: reading /Volumes/Serine/wd/18-03-14/4_28_S28_L001-bsmap_out_Cv3.sam ...
[samopen] SAM header is present: 11 sequences.
@ Wed Mar 14 14:24:24 2018: combining CpG methylation from both strands ...
@ Wed Mar 14 14:25:04 2018: writing /Volumes/Serine/wd/18-03-14/methratio-out4_28_S28.txt ...
@ Wed Mar 14 14:27:25 2018: done.
@ Wed Mar 14 14:27:26 2018: reading reference /Volumes/Serine/wd/18-03-14/GCF_002022765.2_C_virginica-3.0_genomic.fna ...
@ Wed Mar 14 14:27:50 2018: reading /Volumes/Serine/wd/18-03-14/5_35_S35_L001-bsmap_out_Cv3.sam ...
[samopen] SAM header is present: 11 sequences.
@ Wed Mar 14 14:27:50 2018: combining CpG methylation from both strands ...
@ Wed Mar 14 14:28:31 2018: writing /Volumes/Serine/wd/18-03-14/methratio-out5_35_S35.txt ...
@ Wed Mar 14 14:30:43 2018: done.
@ Wed Mar 14 14:30:44 2018: reading reference /Volumes/Serine/wd/18-03-14/GCF_002022765.2_C_virginica-3.0_genomic.fna ...
@ Wed Mar 14 14:31:07 2018: reading /Volumes/Serine/wd/18-03-14/6_36_S36_L001-bsmap_out_Cv3.sam ...
[samopen] SAM header is present: 11 sequences.
@ Wed Mar 14 14:31:07 2018: combining CpG methylation from both strands ...
@ Wed Mar 14 14:31:47 2018: writing /Volumes/Serine/wd/18-03-14/methratio-out6_36_S36.txt ...
@ Wed Mar 14 14:34:04 2018: done.
@ Wed Mar 14 14:34:05 2018: reading reference /Volumes/Serine/wd/18-03-14/GCF_002022765.2_C_virginica-3.0_genomic.fna ...
@ Wed Mar 14 14:34:29 2018: reading /Volumes/Serine/wd/18-03-14/7_29_S29_L001-bsmap_out_Cv3.sam ...
[samopen] SAM header is present: 11 sequences.
@ Wed Mar 14 14:34:38 2018: combining CpG methylation from both strands ...
@ Wed Mar 14 14:35:20 2018: writing /Volumes/Serine/wd/18-03-14/methratio-out7_29_S29.txt ...
@ Wed Mar 14 14:37:52 2018: done.
@ Wed Mar 14 14:37:53 2018: reading reference /Volumes/Serine/wd/18-03-14/GCF_002022765.2_C_virginica-3.0_genomic.fna ...
@ Wed Mar 14 14:38:17 2018: reading /Volumes/Serine/wd/18-03-14/9_31_S31_L001-bsmap_out_Cv3.sam ...
[samopen] SAM header is present: 11 sequences.
@ Wed Mar 14 14:38:28 2018: combining CpG methylation from both strands ...
@ Wed Mar 14 14:39:10 2018: writing /Volumes/Serine/wd/18-03-14/methratio-out9_31_S31.txt ...
@ Wed Mar 14 14:41:49 2018: done.